Hi Jean,
I did use a formula and a data frame in creating the rpart model, and the
variable names are quite simple. And rpart is definitely supported.
Best,
Jane
On Tue, May 27, 2014 at 5:44 AM, Adams, Jean wrote:
> Jane,
>
> Page 9 of the reference manual,
> http://cran.r-project.org/web/pac
Hello all,
I want to plot the legend for the following two lines:
I have two lines:
X1<-c(0,1,2,3,4)
Y1<-c(0,1,2,3,4)
Y2<-c(5,6,7,8,9)
Y3<-(32,33,34,35,36)
plot(X1,Y3,pch=20)
lines(X1,Y1,lty=1,type='o')
lines(X1,Y2,lty=1,type='b')
lines(X1,Y3,lty=2)
Any ideas how?
Hi,
You can also try:
dat <- read.table(text="Name C1 C2 C3
1 A 3 3 5
2 B 2 7 4
3 C 4 3 3
4 C 4 4 6
5 D 5 5 3",sep="",header=TRUE,stringsAsFactors=FALSE)
library(plyr)
ddply(dat,.(Name),numcolwise(mean,na.rm=TRUE))
A.K.
On Tuesday, May 27, 2014 4:08 PM, Verena We
Forgot, about the mean:
lapply(split(seq_len(nrow(AAA)),((seq_len(nrow(AAA))-1)%%12)+1),function(i)
colMeans(AAA[i,]))
A.K.
On , arun wrote:
Hi Eliza,
May be this helps:
lapply(split(seq_len(nrow(AAA)),((seq_len(nrow(AAA))-1)%%12)+1),function(i)
AAA[i,])
A.K.
On Tuesday, May 27, 2014
Hi Eliza,
May be this helps:
lapply(split(seq_len(nrow(AAA)),((seq_len(nrow(AAA))-1)%%12)+1),function(i)
AAA[i,])
A.K.
On Tuesday, May 27, 2014 6:48 PM, eliza botto wrote:
Dear R family,
I have this matrix say
AAA<-matrix(sample(1:240),ncol=2)
I first want to combine every 13th row in both co
On May 27, 2014, at 3:54 AM, Kristi Glover wrote:
>
> data<-structure(list(siteS = structure(c(3L, 3L, 3L, 4L, 4L, 5L, 5L,
> 5L, 5L, 5L, 1L, 1L, 1L, 2L), .Label = c("11a", "12d", "1a", "2v",
> "6a"), class = "factor"), species = structure(c(1L, 2L, 3L, 1L,
> 4L, 1L, 4L, 5L, 2L, 3L, 1L, 6L, 3L
On May 27, 2014, at 1:51 AM, Xebar Saram wrote:
> Hi all
>
> i know this is probably a silly question but im wondering what is the
> 'reference' category when you run a binomal glm. that is my outcome/DV is
> 0,1 and i run a regression and get coefficients. do the coefficients refer
> to the pro
Dear R family,
I have this matrix say
AAA<-matrix(sample(1:240),ncol=2)
I first want to combine every 13th row in both columns. precisely, starting
from row-1 1,13,25,37,49, then starting from row-2
2,14,26,38,50 also 3,15,27,39,51 and similarly starting from row 4, row number
5, row 6... ti
On 28/05/14 00:48, Jim Lemon wrote:
Hi all,
I thought it was all over, but when I started my R help (help.start()) to
check something, none of the help files in plotrix were available, each
displaying an error message that some 2-3 Gb of memory could not be
allocated. The same message appeared wh
On 28/05/14 01:28, will.ea...@gmx.net wrote:
Dear all,
how can I install the Windows/R package
http://www.ssg.uab.edu/bhglm/files/BhGLM_1.0.zip
under Linux/R?
There is no CRAN package.
Simply, applying gunzip, tar -czvf, R CMD INSTALL *.tar.gz did not work.
Don't mess
Hi,
I am running beta mixture regressions using the betamix() command from the
package 'betareg' (3.0-4). I In order to inform the choice about the number
of latent classes I took a look at the various information criteria (AIC,
BIC, ICL) and learnt that the integrated completed likelihood (ICL) i
Hello,
Try the following.
dat <- read.table(text = "
Name C1 C2 C3
1 A 3 3 5
2 B 2 7 4
3 C 4 3 3
4 C 4 4 6
5 D 5 5 3
", header = TRUE)
str(dat)
aggregate(dat[, -1], list(dat$Name), mean)
Hope this helps,
Rui Barradas
Em 27-05-2014 21:06, Verena Weinbir escreve
Look at the aggregate function. As long as you have a column like
Name that indicates which rows should be averaged together it will
work (technically it will average the other rows as well, but since
the average of 1 number is that number you will not see a difference).
On Tue, May 27, 2014 at 2
Hello,
I have a big dataframe, and want to average two specific cells of two
specific rows and then replace those two rows with one row which contains
the averaged cells. Example (row 3 and 4: Cells2 and Cells3 averaged and
replaced)
NameC1 C2 C3
1 A 3 3 5
2 B 2 7 4
3 C 4 3
Hi,
Please post in plain text and show the example using ?dput.
Assuming that you wanted a "data.frame" and not a "list"
May be this helps:
set.seed(428)
dat1 <- data.frame(`block identifier`=rep(1:40,each=12),`block
size`=12,`sequence within block`=rep(1:12,40), treatment=sample(paste("Group"
On 2014/5/27 11:06, Boris Steipe wrote:
I thought so. The behaviour differs when inserting and pasting. See:
http://support.microsoft.com/kb/926317
Googling for how to turn this autoscaling nonsense off did not yield an
obvious result. This probably means that you'll need to adjust your
workflow
I thought so. The behaviour differs when inserting and pasting. See:
http://support.microsoft.com/kb/926317
Googling for how to turn this autoscaling nonsense off did not yield an obvious
result. This probably means that you'll need to adjust your workflow instead,
e.g. by increasing the margin
Well, the short answer is "don't do that" (resize after the fact). Resize your
graphic window first and then re-tune your annotations for that size.
The longer answer is that the lattice and ggplot2 packages were developed in
part in response to the limitations of base graphics. They don't neces
On 2014/5/27 10:32, Boris Steipe wrote:
What does Word "think" the object's size is? Is it 4x4 scaled at 133% ? Or is
it 5.33 x 5.33 scaled at 100%?
B.
Thanks for pointing me the scaling factor.
I checked them. For the plot pasted into Word, i.e., 4"x4", the plot is
scaled at 75%. The origi
What does Word "think" the object's size is? Is it 4x4 scaled at 133% ? Or is
it 5.33 x 5.33 scaled at 100%?
B.
> On May 27, 2014, at 12:28, Jinsong Zhao wrote:
>
> Jean,
>
> Thank you for checking the problem. I have the same software with you.
>
> If I created plot with
> windows(width =
Thanks David,
I try and I wish I could benefit.
Sorry I'm too stupid to learn much the documentation.
There is so much of it and its interrelations not
easily determined and I can't figure out where to look.
It's hard to understand, but I try.
Hard for my friends too.
Now I have a quite nice graphi
On Tue, May 27, 2014 at 8:02 AM, Bastian Pöschl wrote:
> Hallo,
> i try to draw a plot (plot.zoo) with a secondary y-axis.
> Further I want to draw reference lines.
> Unfortunately I do not manage to get control on the ticks, so that the
> reference lines match both- primary and secondary y-axis.
On May 27, 2014, at 4:46 AM, Andy Siddaway wrote:
> Dear R help,
>
> I cannot login to my account. I am keen to remove the posting I made to R
> help from google web searches - see
> http://r.789695.n4.nabble.com/R-software-installation-problem-td4659556.html
>
>
> Thanks,
>
> Andy
You can
Dear all,
I would like to know how to plot the results of a regression where various
predictors resulted significant. Further, I would like how to add the
regression line. Is that possible?
For instance, I have run POLS=plm() where 6 coefficients resulted
significant; then I would like to use plo
Jean,
Thank you for checking the problem. I have the same software with you.
If I created plot with
windows(width = 4, height = 4, pointsize = 10)
plot(1:10)
Then I "copy as metafile" and paste it into Word. I can get the correct
size.
However, if I select "save as metafile" and save it as "a
Dear Jim,
Thank you very much indeed for your quick reply and kind help.
The code you provided works perfectly, which is exactly what I want.
Kind regards,
Wei
On 27 May 2014 14:11, Jim Lemon wrote:
> On Tue, 27 May 2014 11:36:21 AM Wei Qin wrote:
> > ...
> > #Then my questions is how to make
Dear R-listers,
I am using R 3.1, I amtrying to generate 40 patients in each treatment group
with 12 block, Equal number of treatment in each block ,using stratification
Variable age65(yes, no),surgery(yes ,no) and smoke (yes, no)
How can i creat like thislist in R.
block identifier
Hi
cast(data, siteS~species)
gives you quite close result, only row ordering is different
Regards
Petr
> -Original Message-
> From: r-help-boun...@r-project.org [mailto:r-help-bounces@r-
> project.org] On Behalf Of Kristi Glover
> Sent: Tuesday, May 27, 2014 12:54 PM
> To: R-help
> Sub
Hallo,
i try to draw a plot (plot.zoo) with a secondary y-axis.
Further I want to draw reference lines.
Unfortunately I do not manage to get control on the ticks, so that the
reference lines match both- primary and secondary y-axis.
Maybe someone already solved this problem??
It would be great.
B
Dear R help,
I cannot login to my account. I am keen to remove the posting I made to R
help from google web searches - see
http://r.789695.n4.nabble.com/R-software-installation-problem-td4659556.html
Thanks,
Andy
Dr Andy Siddaway
Registered Clinical Psychologist/
MRC Clinical Research Training
Hi Barry,
I don't think pam has a way to predict for test observations. However, this
questions was asked and answered earlier.
The approach is to take the medoids generated in pam and use them in a K-nn
algorithm as the training data with K = 1. This way, you can classify your
testing data by id
Hi,
I guess ?cast should work on the original dataset as it is in the long format
cast(data, siteS ~ species,value="abundance")
siteS sa sb sc sd se sg
1 11a 11 NA 37 NA NA 51
2 12d 15 NA NA NA NA NA
3 1a 31 55 62 NA NA NA
4 2v 42 NA NA 40 NA NA
5 6a 30 23 74 84 10 NA
#if you ar
It may not be possible. Contact the maintainer described at
http://www.ssg.uab.edu/bhglm/ to ask for a source package.
---
Jeff NewmillerThe . . Go Live...
DCN:Basics: ##.#.
Hi Monaly,
According to the description of ?tri2nb
The function uses the ‘deldir’ package to convert a matrix of
two-dimensional coordinates into a neighbours list of class ‘nb’
with a list of integer vectors containing neighbour region number
ids.
So, col.tri.nb is a list of leng
Dear all,
how can I install the Windows/R package
http://www.ssg.uab.edu/bhglm/files/BhGLM_1.0.zip
under Linux/R?
There is no CRAN package.
Simply, applying gunzip, tar -czvf, R CMD INSTALL *.tar.gz did not work.
Thanks in advance,
Will
_
Dear Kehl and Greg,
Many thanks for your advice. I got it.
Best wishes,
Helen
On 23 May 2014 22:45, Kehl Dániel wrote:
> Hi,
>
> the function is in the plotrix package, so you have to install and call
> that package first.
> After installing see example(addtable2plot).
>
> HTH,
> daniel
> __
Thank you both for your kinds help
best
z.
On Tue, May 27, 2014 at 2:25 PM, Prof Brian Ripley wrote:
> On 27/05/2014 09:51, Xebar Saram wrote:
>
>> Hi all
>>
>> i know this is probably a silly question but im wondering what is the
>> 'reference' category when you run a binomal glm. that is my
On Tue, 27 May 2014 14:01:56 +1000 Jim Lemon wrote:
> On Mon, 26 May 2014 09:43:45 AM Ranjan Maitra wrote:
> > ...
> > Though, I have to say I don't quite see how you managed to install R
> > without the above package (it is a required dependency on Fedora).
> > ...
> > Hope the above helps!
> >
Hi Praveen,
Try this:
dat <- read.table(text="INCOME
20100
26800
5
18",sep="",header=TRUE)
transform(dat,
INCOME_RANGE=as.character(cut(INCOME,breaks=c(0,25,50,100,150,180,Inf)*1e3,right=FALSE,labels=c("below
25,000", "25,000-49,999.99", "50,000-99,999.99", "1,00,000-1,49,999.99",
"
Jinsong,
When I use your code to create the abcd.emf file, and then copy and paste
it into Word, I end up with a 4" x 4" plot with 12 pt font, just as you
intended. I'm using R version 3.1.0, and Word 2010 version 14.0.7116.5000.
Not sure why it works differently for you.
Jean
On Mon, May 26,
Hi all,
I thought it was all over, but when I started my R help (help.start()) to
check something, none of the help files in plotrix were available, each
displaying an error message that some 2-3 Gb of memory could not be
allocated. The same message appeared when I tried to get text help in
the
Jane,
Page 9 of the reference manual,
http://cran.r-project.org/web/packages/plotmo/plotmo.pdf, discusses this
error.
'The work-around is to simplify or standardize the way the model function
is called. Use a formula and a data frame, or at least explicitly name the
variables rather than passing
On Tue, 27 May 2014 11:36:21 AM Wei Qin wrote:
> ...
> #Then my questions is how to make a broken y axis in grouped
barplot
> figures?
>
> # In another words, how to combine the function of barplot and
gap.barplot?
>
Hi Wei,
The gap.barplot function doesn't do grouped bars (yet). You can probab
Hi Barnaby,
No problem.
If the function got masked by loading another package, you could do:
wt.aligned <- wavelets::align(wt)
A.K.
Thank you
I spend more time looking into it since I placed the question and it seems that
there is a conflict between two or more packages when open jointly wi
Hi Kristi
It doesn't seem that unstack can do it for you. Here is one way:
library(reshape)
data.molten <- melt(data, id = c("siteS", "species"))
cast(data.molten, siteS ~ species)
siteS sa sb sc sd se sg
1 11a 11 NA 37 NA NA 51
2 12d 15 NA NA NA NA NA
31a 31 55 62 NA NA NA
42v 42
On 27/05/2014 09:51, Xebar Saram wrote:
Hi all
i know this is probably a silly question but im wondering what is the
'reference' category when you run a binomal glm. that is my outcome/DV is
0,1 and i run a regression and get coefficients. do the coefficients refer
to the probability to get 0 or
On May 27, 2014, at 3:51 AM, Xebar Saram wrote:
> Hi all
>
> i know this is probably a silly question but im wondering what is the
> 'reference' category when you run a binomal glm. that is my outcome/DV is
> 0,1 and i run a regression and get coefficients. do the coefficients refer
> to the pr
Hi Arun,
Thank you for your help, I have a few questions though if you don't mind.
I'm a bit confused about the following 2 lines of code:
col.tri.nb <- tri2nb(coords, row.names=ind)
lapply(col.tri.nb,function(x) ind[x])[1:5]
## from what I understand in the first line determines the neighbourin
Dear Sir/Madam,
It is possible to make grouped bar plots via barplot. But I want to add a
break in y axis for data that largely differs. However, this seems
complicated. Although gap.barplot may add a break in y asis, but the bars
are not grouped as I wanted. Could you help me with this problem
Dear R User,
I was wondering how I can unstack my data. For example I have following data set
data<-structure(list(siteS = structure(c(3L, 3L, 3L, 4L, 4L, 5L, 5L,
5L, 5L, 5L, 1L, 1L, 1L, 2L), .Label = c("11a", "12d", "1a", "2v",
"6a"), class = "factor"), species = structure(c(1L, 2L, 3L, 1L,
4
Dear David,
Thank you very much for you help, I really appreciate it.
I am not using the read.snps.long() or any other import function, as the
data is already in snpMatrix, so I cannot specify it at the input stepâ¦
I am reading the data as a snpMatrix, so using load() after having called
the s
Hi all
i know this is probably a silly question but im wondering what is the
'reference' category when you run a binomal glm. that is my outcome/DV is
0,1 and i run a regression and get coefficients. do the coefficients refer
to the probability to get 0 or 1?
thanks so much in advance
Z
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