Dear R users.
I'm new with layout and I can't figure how to teak my graphs.
I have the following code:
layout(matrix(c(1,2,3), 3, 1, byrow = TRUE), heights=c(0.3,0.3,0.6))
boxplot(rnorm(100), horizontal=TRUE, axes=FALSE)
boxplot(rnorm(100), horizontal=TRUE, axes=FALSE)
hist(rnorm(100))
> Which I understand to mean that the bounds of the indicated vector/matrix
> have been violated. I am however at a loss as to how to resolve this
... Presumably because you haven't learned to use R's debugging tools.
So time to learn. See the "debugging" Chapter of the R Language Manual
and the H
Petr,
Another program that may be useful is ImageJ which has a great many
useful analytic plugins. The program is written in Java and it
supports a good many different image file formats. You should also be
able to use Octave to normalize an image.
JWDougherty
_
Jim, thank you, that worked great.
Paul Prew | Statistician
651-795-5942 | fax 651-204-7504
Ecolab Research Center | Mail Stop ESC-F4412-A
655 Lone Oak Drive | Eagan, MN 55121-1560
-Original Message-
From: Jim Lemon [mailto:j...@bitwrit.com.au]
Sent: Friday, February 22, 2013
Greetings!
I am trying to compare simulated environmental conditions from a model
against a recruitment time series for a species of crab by first dropping 5
data points, and then using the remainder to attempt to simulate the
missing data as a measure of best fit and using the following code:
a
On Feb 22, 2013, at 5:52 PM, Joshua Wiley wrote:
> Hi Tao,
>
> I wonder if you are on Windows? If so, make sure you have qpdf
> installed, and the location is in your path.
>
> Cheers,
>
> Josh
>
> On Fri, Feb 22, 2013 at 3:32 PM, Tao Wang wrote:
>> Hi Everyone!
>>
>> This is my first time
Hi Tao,
I wonder if you are on Windows? If so, make sure you have qpdf
installed, and the location is in your path.
Cheers,
Josh
On Fri, Feb 22, 2013 at 3:32 PM, Tao Wang wrote:
> Hi Everyone!
>
> This is my first time using R-help. I am trying to do R CMD check before
> uploading my package
Dear Sir,
I am beginner in using R. I am working on climate and like to plot spatial
but I can't able to go ahead. I know it is too simply but not for me. Here
is attached the data and my sample script. I am waiting R-users to solve my
problem. Your help is valuable for me. Thank you.
--
-
Hi Everyone!
This is my first time using R-help. I am trying to do R CMD check before
uploading my package to CRAN.
R CMD check --as-cran "my package folder".
However, it spits out this warning:
"pdf is needed for checks on size reduction of PDFs"
I searched online but found no clue to solve
Many thanks to all who replied to this post. the problem has now been sorted
out. i installed "GCC-10.7-v2.pkg", now i can install packages from source
--
View this message in context:
http://r.789695.n4.nabble.com/R-on-mac-not-installing-packages-tp4659392p4659414.html
Sent from the R help ma
On 02/23/2013 11:34 AM, Prew, Paul wrote:
Hello, I’m trying to follow the syntax of a script from a journal website.
In order to create a regression formula used later in the script, the
regression matrix must have column names “X1�, “X2�, etc. I have tried
to assign these column
As you appear not to know, or at least have not stated, **what** you
want to do, how can you expect anyone to tell you **how** to do it?
Cheers,
Bert
On Fri, Feb 22, 2013 at 2:33 PM, Rich Shepard wrote:
> On Fri, 22 Feb 2013, Bert Gunter wrote:
>
>> You do not need to use ordered factors.
>> new
Hello, Iâm trying to follow the syntax of a script from a journal website.
In order to create a regression formula used later in the script, the
regression matrix must have column names âX1â, âX2â, etc. I have tried
to assign these column names to my matrix ScoutRSM.mat using a for
Samantha Warnes wisc.edu> writes:
>
> Hello,I'm still working with this data set, and
> trying to fit it with a nonlinear model. Here is my data
> > small <- c(507680,507670,508832,510184,511272,513380,515828,
519160,525046,
534046,547982,567124,590208,614506,637876,656846,669054,672976,668
Hello,I'm still working with this data set, and trying to fit it with a
nonlinear model. Here is my data
> small <-
> c(507680,507670,508832,510184,511272,513380,515828,519160,525046,534046,547982,567124,590208,614506,637876,656846,669054,672976,668800,656070,637136,614342,590970,570752,554480,54
Hi Mackay and anybody
(a) Is it possible to select randomly (let say five grids) and plot?
(b) Is it possible to plot five nearest grid in one figure?
The original question and improved codes:
#I am ploting gridded time series data. I would like the actual lat
#and lon value appear on the graph-
Hi all,
I was installing a package *RBGL* of bioconductor. However, I had some
issues while installing it. I asked the devel group of bioconductor and
they told me to consult this group. Here is my conversation with the
bioconductor group related to the problem
*Me->*
I was trying to install the
David Winsemius comcast.net> writes:
> On Feb 22, 2013, at 11:02 AM, lara sowale wrote:
>
> > I am sorry to bug you, I am having this error whenever I want to run
> > random effects regression in software R: Error in if (sigma2$id < 0)
> > stop(paste("the estimated variance of the", :
> > mis
On Fri, 22 Feb 2013, Bert Gunter wrote:
You do not need to use ordered factors.
newfac <- factor(oldfac, lev= ...) ## will do it. e.g.
x <- factor(letters[1:3]) ## default ordering is alphabetic (mod locale)
x
[1] a b c
Levels: a b c
y <- factor(x,lev=letters[3:1]) ## reorder the levels
y
On Fri, 22 Feb 2013, David Winsemius wrote:
`is.ordered` will return TRUE if it is an ordered factor. That's not what
you want to know and using `as.ordered` would also fail to provide the
needed ordering. You need to provide a proper levels argument to the
factor function. And you will find tha
Elaine Kuo gmail.com> writes:
>
> Hello
>
> I am using lattice bwplot to draw migration distance of three groups of
> birds.
>
> The boxplots from the left to right is displayed
> in alphabetic order of the boxplot names, as the default setting.
>
> However, I would like the boxplots from the
Hello
I am using lattice bwplot to draw migration distance of three groups of
birds.
The boxplots from the left to right is displayed
in alphabetic order of the boxplot names, as the default setting.
However, I would like the boxplots from the left to right to be displayed
according to the
On Feb 22, 2013, at 3:46 PM, Prof Brian Ripley wrote:
> On 22/02/2013 21:26, David Winsemius wrote:
>> The system is reporting that it cannot find `make`. It appears that you have
>> not installed XCode on you Mac, or that you did with an earlier version for
>> which you have not updated, or s
On Feb 22, 2013, at 1:22 PM, Rich Shepard wrote:
> On Fri, 22 Feb 2013, Bert Gunter wrote:
>
>> Manually change the ordering of the levels in the factor to that which you
>> want (see ?factor if necessary) and replot.
>
> Bert,
>
> I'll do this.
>
> I looked at ?factor and will try is.order
On 22/02/2013 21:26, David Winsemius wrote:
The system is reporting that it cannot find `make`. It appears that you have
not installed XCode on you Mac, or that you did with an earlier version for
which you have not updated, or something else which has broken your
installation. Please read the
You do not need to use ordered factors.
newfac <- factor(oldfac, lev= ...) ## will do it. e.g.
> x <- factor(letters[1:3]) ## default ordering is alphabetic (mod locale)
> x
[1] a b c
Levels: a b c
> y <- factor(x,lev=letters[3:1]) ## reorder the levels
> y
[1] a b c
Levels: c b a
-- Bert
On F
The system is reporting that it cannot find `make`. It appears that you have
not installed XCode on you Mac, or that you did with an earlier version for
which you have not updated, or something else which has broken your
installation. Please read the MacOS FAQ. (And post further such question on
On Feb 22, 2013, at 11:29 AM, Rich Shepard wrote:
> On Fri, 22 Feb 2013, David Winsemius wrote:
>
>> It appears these may be factors. No much in the way of code can be offered
>> since you have provided none of hte requested details.
>
> Yes, David, strip labels are factors. What sort of detai
On Fri, 22 Feb 2013, Bert Gunter wrote:
Manually change the ordering of the levels in the factor to that which you
want (see ?factor if necessary) and replot.
Bert,
I'll do this.
I looked at ?factor and will try is.ordered() to see if that makes a
difference.
Many thanks,
Rich
___
> I am using the iris dataset that contains mixed variables (some columns are
> numeric and some categorical).
>
>
> > iris
> Sepal.Length Sepal.Width Petal.Length Petal.WidthSpecies
> 15.1 3.5 1.4 0.2 setosa
> 24.9 3.0
I thiknk that I have to install Linux on VM... There is a shortest way
by the way, could you please advise how to rebuild 'XML' package for R with
latest libxml sources? Who may do that?
or is it possible to build the new R package based on another non-C sorced
parsers based like on PyPY, erlang a
Hi, I have not been able to use R in my macbook pro. I am getting the
following error message every time i try to install a package
* installing *source* package ‘Hmisc’ ...
** package ‘Hmisc’ successfully unpacked and MD5 sums checked
** libs
*** arch - i386
sh: make: command not found
ERROR: co
Manually change the ordering of the levels in the factor to that which
you want (see ?factor if necessary) and replot.
-- Bert
On Fri, Feb 22, 2013 at 11:17 AM, David Winsemius
wrote:
>
> On Feb 22, 2013, at 11:02 AM, Rich Shepard wrote:
>
>> With multiple panels in a lattice trellis plot the s
Wow, Jim- fun tid bit! Unrelated to op, but I will say thank you- as I know it
will be useful!
~Nicole Ford
Ph.D. Student
Graduate Assistant/ Instructor
Department of Government and International Affairs
University of South Florida
office: SOC 012M
e: nmhi...@mail.usf.edu
http://gia.usf.edu/stud
On Fri, 22 Feb 2013, David Winsemius wrote:
It appears these may be factors. No much in the way of code can be offered
since you have provided none of hte requested details.
Yes, David, strip labels are factors. What sort of detail would you like
to see to advise me on how to specify the ord
Run with:
options(error=utils::recover)
Then at the point of the error you will be able to examine sigma2$id
which is probably not a numeric. Any time you get an error like this,
if you have been using the above statement in your script (which I
always have turned on), you will be able to discov
On Feb 22, 2013, at 11:02 AM, Rich Shepard wrote:
> With multiple panels in a lattice trellis plot the sequence is, for
> example, 1, 10, 11, 12, 2, 3, 4. I want the sequence to be 1, 2, 3, 4, 10,
> 11, 12.
>
It appears these may be factors. No much in the way of code can be offered
since you
On Feb 22, 2013, at 11:02 AM, lara sowale wrote:
> I am sorry to bug you, I am having this error whenever I want to run
> random effects regression in software R: Error in if (sigma2$id < 0)
> stop(paste("the estimated variance of the", :
> missing value where TRUE/FALSE needed.
>
> Please he
With multiple panels in a lattice trellis plot the sequence is, for
example, 1, 10, 11, 12, 2, 3, 4. I want the sequence to be 1, 2, 3, 4, 10,
11, 12.
Reading ?strip.default and the appropriate section in the Lattice book I'm
not seeing how to specify the 'human' numeric order rather than the
On Feb 21, 2013, at 2:15 PM, William Dunlap wrote:
> Many find the functions in the plyr package more convenient to use than the
> do.call(rbind, lapply(split(...),...) business:
>
>> library(plyr)
>> ddply(dat1, .(Subject,Block), summarize, MeanFeature1=mean(Feature1),
>> MeanFeature2=mean(Fe
I am sorry to bug you, I am having this error whenever I want to run
random effects regression in software R: Error in if (sigma2$id < 0)
stop(paste("the estimated variance of the", :
missing value where TRUE/FALSE needed.
Please help me look into it.
[[alternative HTML version delete
On 2/21/2013 6:02 PM, Mitchell Maltenfort wrote:
> One more link to look at
>
> http://glmm.wikidot.com/faq
>
> This is the r-sig-mixed-models FAQ.
Thanks so much for pointing that out. That seems to confirm that what I
want is lme4, in particular glmer().
Ross
>
> On Thu, Feb 21, 2013 at 8:53 PM
For some of the fancier transforms it may be easier to use an outside tool
such as Imagemagick which will do a lot of these things. There is even a
C++ interface to imagemagick that may work nicely with packages like Rcpp
if you don't want to use an intermediate file.
But jobs like converting to
Hello,
Instead of try(cor.test) you could try(return_cor).
Also, isn't there a bug in return_cor? See the commented line below.
return_cor = function(x, y, tresh = 0.05) {
z = cor.test(x,y)
if(z[[3]] < tresh) {
return(z[[4]]) # not z[[5]], always zero
} else
I would also suggest the package raster, which usually make it much
easier to extract spatial NetCDF-data than direct use of the
NetCDF-packages.
Bests,
Jon
On 22-Feb-13 17:14, Marc Schwartz wrote:
NetCDF is a binary file format and will be stripped by the list server filters.
Don't bother a
NetCDF is a binary file format and will be stripped by the list server filters.
Don't bother attaching it unless the two of you want to communicate off-list.
Anup has not indicated what he has actually tried to do to read in the file. R
will not natively read NetCDF files, so he will need to use
There are at least three packages that can read NetCDF in native form,
RNetCDF, ncdf and ncdf4.
There are other options. Explore these ones.
Cheers, Mike.
On Sat, Feb 23, 2013 at 2:48 AM, Gyanendra Pokharel
wrote:
> I can't see your attached file. Can you re-attache it?
> Thanks
> Gyanendra Pok
Le jeudi 21 février 2013 à 18:53 +0400, Lawr Eskin a écrit :
> iconv trued before in various try, same issue and result with encoding
> = unknown
> now try sub - same issue
This procedure works on Linux, but not on Windows:
library(RCurl)
library(XML)
u <- "http://www.cian.ru/cat.php?deal_type=2&o
I can't see your attached file. Can you re-attache it?
Thanks
Gyanendra Pokharel
University of Guelph
Guelph, ON
On Fri, Feb 22, 2013 at 7:58 AM, Anup khanal wrote:
>
> Good afternoon,
> I am a new in R. I have to work with large climate data.I am not able to
> read the netcdf file. Can anyone
Say, under K-means, would there be a way to set a number (of
observations/members) to a clustering solution in order to obtain an evenly
distributed set of clusters?
--
View this message in context:
http://r.789695.n4.nabble.com/Is-there-a-way-to-set-the-number-of-observations-per-cluster-tp465
Good afternoon,
I am a new in R. I have to work with large climate data.I am not able to read
the netcdf file. Can anyone try with this file attached ?
Best Regards,
..Anup KhanalNorwegian Institute of science and Technology
(NTNU)Trondheim, NorwayMob:(+47) 45174313
I am using the code below to calculate the correlation map between two
datasets. This code worked fine.
dir1 <- list.files("D:thly", "*.bin", full.names = TRUE)
dir2 <- list.files("D:002", "*.envi", full.names = TRUE)
file_tot <- array(dim = c(1440, 720, 11, 2))
for(i in 1:length(d
Hello,
I bet there are simpler solutions but I'm not thinking of anything else,
right now.
fun <- function(x, y){
f <- function(a, b){
a <- as.data.frame(a)
b <- as.data.frame(b)
names(a)[1] <- names(b)[1] <- "V1"
res <- m
Waow awesome!!
It worked perfectly!
Thanks heaps Yves!
Greatly appreciated!
Marios
On 22 February 2013 12:45, yrosseel wrote:
> On 02/22/2013 11:40 AM, Marios wrote:
>
>> Thank you very much Yves!
>>
>> I have managed to get the total indirect effects that i wanted but it
>> seems to only wo
Hi Eleonora,
To unsubscribe, click the mailing list link at the bottom of this (and
every) r-help message, scroll to the bottom and follow the unsubscribe
instructions.
Best,
Ista
On Fri, Feb 22, 2013 at 7:02 AM, Eleonora Schiano
wrote:
> i would like to unsubscribe from the mailing list
> Than
i would like to unsubscribe from the mailing list
Thank's
[[alternative HTML version deleted]]
__
R-help@r-project.org mailing list
https://stat.ethz.ch/mailman/listinfo/r-help
PLEASE do read the posting guide http://www.R-project.org/posting-gu
Folks,
Is there any implementation available in R for the simultaneous selection of
lag order and rank of a nonstationary VAR as described in Chao & Phillips
(1999): Model selection in partially nonstationary vector autoregressive
processes with reduced rank structure, J. Econ. (91).
Or any othe
hi there,
after bumping into a problem for installing pgirmess package in linux
mint 14, i figured out this solution that seemed to work fine
---
* in synaptic or similar software :
installation of proj dev lib & dependances # to sort out problems of rgdal
installation of lib
Thank you very much Yves!
I have managed to get the total indirect effects that i wanted but it seems
to only work on the unstandardized coefficients. I use "standardized =TRUE"
in the "summary" command but the "std.all" column has the same values as
the "Estimate" (unstandardized) column for the
Dear Martin Morgan,
thank you very much for your answer that made it clear to me.
Since my package is linked to yours by essence, there is no reason to
redefine the existing setGeneric functions.
As a summary, if someone is importing functions from another package, he is
supposed to know they alr
Hello,
In SPSS the cluster analysis output includes an agglomerations
schedule, which details the stages when cases are joined.
Is it possible to obtain such output when performing cluster analysis
in R? If so, I'd appreciate advice regarding how to obtain this information.
Any assistance
On 02/22/2013 11:40 AM, Marios wrote:
Thank you very much Yves!
I have managed to get the total indirect effects that i wanted but it
seems to only work on the unstandardized coefficients. I use
"standardized =TRUE" in the "summary" command but the "std.all" column
has the same values as the "Es
Thanks.
I tried EBImage several years ago for another problem, but Bioconductor
packages have some difficulties to install in our network/firewall environment
and I am not in a position to change it. It seems to me also an overkill for
such simple task.
jpeg and png seems to me a bit too much
Hi
I understood that OP wanted to know how many columns s/he has.
Anyway, s/he got plenty of answers which can inspect and choose one which
corresponds to the problem.
Regards
Petr
> -Original Message-
> From: Rolf Turner [mailto:rolf.tur...@xtra.co.nz]
> Sent: Friday, February 22, 2013
Hi
> -Original Message-
> From: r-help-boun...@r-project.org [mailto:r-help-bounces@r-
> project.org] On Behalf Of Prof Brian Ripley
> Sent: Friday, February 22, 2013 8:17 AM
> To: r-help@r-project.org
> Subject: Re: [R] package ReadImages
>
> On 22/02/2013 05:44, Greg Snow wrote:
> > Som
On 02/21/2013 03:59 PM, Marios wrote:
My question...I would like to calculate the total indirect effects of
all variables on the right-hand-side of the regression eqn's so that i can
work out the total effect (indirect effects + direct effect)
I know the direct effect and i can calculate the
Hi,
I released knitr 1.1 to CRAN a few days ago:
http://cran.r-project.org/package=knitr See all new features and
changes at
https://github.com/yihui/knitr/blob/master/NEWS.md#changes-in-knitr-version-11
The version 1.0 does not imply perfect stability or maturity. The
major version number was b
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