Dear all,
I am looking for a function that can plot bitmap images and by plotting I mean
a function that can read an image's matrix structure with integers and assign
colors.
Do you please suggest me what else I can do for plotting these images?
I would like to thank you for your reply
B.R
Alex
Hi all,
I have a sequence file (fasta format) and want to calculate the rho
statistics for dinucleotide abundance value on my data.. the code which I
use is (using seqinr library and current working directory)
seq_info<-read.fasta("gene.txt")
rho(seq_info[1],2)
but it yields only the dinucleoti
Pete,
That seems to work. I wonder what the problem was.
Thanks,
Dom
Dominic J. Pazzula
+-+-+-+-+-+-+-+-+-+-+-
domp...@yahoo.com
From: Pete Brecknock
To: r-help@r-project.org
Sent: Sunday, January 15, 2012 8:13 PM
Subject: Re: [R] problem with table.CAPM in
I understand your point., and is why I have hesitated to say anything in the
past My point is the following last line of that part of the guide:
> Ad hominem comments are absolutely out of place
I guess with a Bayesian approach you can give "absolutely" a fuzzy meaning.
Why I am not a Bayes
Hi Roy,
This still needs refinement and may benefit from moving to a Bayesian
approach, but this is roughly my approach:
status <- function(help, harshness, OP, contributions, prior, duration) {
params <- c(help, harshness, OP, contributions, prior, duration)
stopifnot(all(params > 0 & param
On Sun, Jan 15, 2012 at 9:15 PM, Richard M. Heiberger wrote:
> This is based on lattice, not ggplot, and I hope I understand what you are
> trying to do.
>
> require(lattice)
>
> x <- read.table(text="
> Value Bar Segment
> 1.10020075 1 1
> -1.37734577 2 1
> 2.50702876
>From the r-help posting guidelines:
> Good manners: Remember that customs differ. Some people are very direct.
> Others surround everything they say with hedges and apologies. Be tolerant.
> Rudeness is never warranted, but sometimes `read the manual' is the
> appropriate response. Don't waste
This is based on lattice, not ggplot, and I hope I understand what you are
trying to do.
require(lattice)
x <- read.table(text="
Value Bar Segment
1.10020075 1 1
-1.37734577 2 1
2.50702876 3 1
0.58737028 3 2
0.21106851 3 3
-2.50119261 4
Dom Pazzula wrote
>
> All,
> I'm attempting to run this:
> table.CAPM(series[,"Strat.Return",drop=FALSE],series[,"spy.Return",drop=FALSE])
>
>
> and getting this error
> Error in as.vector(data[, i]) : subscript out of bounds
>
>
> I've searched around and cannot find a solution to the proble
Hi Amanda,
Sorry for the bit of a slow response (classes and research have been
chaotic). Below are details on what I looked at and a few suggestions
at the end for what you can do.
To the general R community: summary.rpart() makes explicit the default
dropping behavior of `[` which makes me thi
Hi,
I'm trying to create a stacked bar plot using ggplot2. Rather than
plotting the count of each of the 13 "Bar" factors on the Y axis, I
would like to represent the sum of the Values associated with each of
the 13 "Bar" factors. Is there a way to do that? Given the following
data, that would ob
Did not fully read the without installing it part.
Mea Culpa,
Ken
On Jan 15, 2012, at 8:56 PM, Jeff Newmiller wrote:
> I don't believe you can. However, you need not install it into a system-wide
> library directory... your personal library (e.g.
> /home/jonas/R/x86_64-pc-linux-gnu-li
I don't believe you can. However, you need not install it into a system-wide
library directory... your personal library (e.g.
/home/jonas/R/x86_64-pc-linux-gnu-library/2.14) should be sufficient.
---
Jeff Newmiller
Begin forwarded message:
> From: Ken Hutchison
> Date: January 15, 2012 8:54:49 PM EST
> To: Ben Bolker
> Subject: Re: [R] Trouble installing packages on R2.14.1
>
> Check browser proxy settings and run R.exe with the proper flags to use them
> from cmd.
> Hope that helps,
> Ken
>
>
>
install.packages('pathtotargz',
repos=FALSE)
I believe that will get you going.
Hope that's helpful,
Ken
On Jan 15, 2012, at 8:33 PM, Joshua Wiley wrote:
> Hi Jonas,
>
> Look at Hadley Wickham's devtools package. It is designed with this
> sort of thing. That said, it really is not too
Crawford Mark derm.qld.gov.au> writes:
>
> Hi,
> Have just recently downloaded R version 2.14.1 and can't install
> packages (Code below), 32bit version on windows. From the looks of
> things access is the problem but I don't know where to start, would it
> be my system that is the problem or i
Rohit Pandey writes:
> Hello R community,
>
> I have a question about the logistic regression function.
> Specifically, when the predictor variable has not just 0's and 1's,
> but also fractional values (between zero and one). I get a warning
> when I use the "glm(formula = ... , family = binomia
On 12-01-14 06:00 AM, r-help-requ...@r-project.org wrote:
Date: Fri, 13 Jan 2012 02:09:09 -0800 (PST)
From: statquant2
To:r-help@r-project.org
Subject: Re: [R] simulating stable VAR process
Message-ID:<1326449349804-4291835.p...@n4.nabble.com>
Content-Type: text/plain; charset=us-ascii
Hello Pau
Hi,
Have just recently downloaded R version 2.14.1 and can't install
packages (Code below), 32bit version on windows. From the looks of
things access is the problem but I don't know where to start, would it
be my system that is the problem or is the repository not set up for the
latest version yet
I use the version 1.6:
$ java -version
java version "1.6.0_26"
Julien
On Jan 15, 2012, at 8:55 PM, Milan Bouchet-Valat wrote:
Le dimanche 15 janvier 2012 à 16:32 +0100, Julien Velcin a écrit :
Unfortunately, it doesn't work. I've installed JGR and launched my
script. I still obtain an error:
All,
I'm attempting to run this:
table.CAPM(series[,"Strat.Return",drop=FALSE],series[,"spy.Return",drop=FALSE])
and getting this error
Error in as.vector(data[, i]) : subscript out of bounds
I've searched around and cannot find a solution to the problem. I've used this
in the past without pr
Hi Jonas,
Look at Hadley Wickham's devtools package. It is designed with this
sort of thing. That said, it really is not too difficult to install
as long as you have a working tool chain (which you will need to test
it anyway).
R CMD INSTALL /tmp/sitools
R
require(sitools)
and away you go testi
Hi,
how can i play around with my first selfwritten package [*]
without to install it to my debian system?
I think of something like doing this:
/tmp/$ R
R version 2.11.1 (2010-05-31)
Copyright (C) 2010 The R Foundation for Statistical Computing
ISBN 3-900051-07-0
> library(/tmp/sitools)
3 * k
On 12-01-15 5:34 PM, David Stevens wrote:
I successfully used .Fortran to load and execute my fortran procedures
under WinXP and 32 bit R. Alas, the same isn't true with my next Windows
7/64 machine, R 2.14.1 (64 bit) and the gnu gfortran (64) compiler
(mingw64 v. 4.6.1). Though I'm able to compi
Hello R community,
I have a question about the logistic regression function.
Specifically, when the predictor variable has not just 0's and 1's,
but also fractional values (between zero and one). I get a warning
when I use the "glm(formula = ... , family = binomial(link =
"logit"))" which says:
"
Late last month Hans Borchers suggested the following
solution (which I trivially converted to a function):
u0 <- function(M)
{
# Mnew the union of intervals in M, an (nx2)-matrix with n > 1:
o <- order(M[, 1], M[, 2])
L <- M[o, 1]; R <- M[o, 2]
k <- 1
Mnew <- matrix(c(L[k], R[
Hi Milan, thanks for the response, I guess grid.arrange does't really serve
the purpose I want(or maybe my grid using level just limits the usage..),
like mentioned by Baptiste.
On Sun, Jan 15, 2012 at 5:13 PM, baptiste auguie <
baptiste.aug...@googlemail.com> wrote:
> ggExtra was not compatible
ggExtra was not compatible with the recent changes in ggplot2 and had
become partially redundant, so I removed it.
grid.arrange and arrangeGrob in gridExtra won't help with the
alignment of axes. align.plots, which I can always send you offlist if
you want, extracted the size of axes and legends f
On 01/13/2012 08:25 PM, collifu wrote:
Hi all,
This is pretty basic but I am not an expert and I couldn't find anything in
the forum or my statistics book about it. I was reading a paper and the
authors were using both "explained deviance" and "explained variance" as
synonyms. They were describi
I successfully used .Fortran to load and execute my fortran procedures
under WinXP and 32 bit R. Alas, the same isn't true with my next Windows
7/64 machine, R 2.14.1 (64 bit) and the gnu gfortran (64) compiler
(mingw64 v. 4.6.1). Though I'm able to compile the routines from the
command line us
Thanks for your note Uwe. Yes I think a lot of the needed work was related
to implementing R functions that many of us use that are not available in
S-Plus, plus what to do about plotmath. It wasn't enough to just be able to
load the R package. I don't think implementation of the needed R functi
Le dimanche 15 janvier 2012 à 15:43 -0600, Tengfei Yin a écrit :
> Hi dear all,
>
> I cannot find ggExtra source code or install it by
>
> install.packages("ggExtra", repos="http://R-Forge.R-project.org";)
This package has been removed, it's been marked as deprecated by its
author:
http://groups.
Hi dear all,
I cannot find ggExtra source code or install it by
install.packages("ggExtra", repos="http://R-Forge.R-project.org";)
I am really interested in one of the functions inside called "align.plots",
but cannot find the package on-line.
Do I miss something? or is there any function simil
Sorry I wasn't completely clear, I am not 100% sure I know all the
terminology but what I want the array to store is both 'Taz' with the
'Bldgtype' count designations like the result from data set one returns.
When there isn't more than one type of 'Bldgtype' like in data set 2 the
'Bldgtype' desi
Dear colleagues,
I am looking for a package to analyze rank-order data in the form of
regression. My outcome (dependent) variable is a rank ordering in the
sense that the respondents to a questionnaire were asked a single question:
to assign the
values 1 to 4 to four different objects (e.g. t
Katja,
since the information given in this message is not sufficient to be able
to help (question whether you are forking or parallelization happens
through, e.g., MPI or sockets) and no reproducible code is given yet (as
the posting guide ask you to provide), let us discuss this off-list and
Thanks so much Jorge and Pete !
Pete Brecknock wrote
>
>
> frame2$age = frame1[match(frame2$ID, frame1$ID),"age"]
>
>
This match function was exactly what I needed to know!
--
View this message in context:
http://r.789695.n4.nabble.com/add-column-with-values-found-in-another-data-frame-tp4
My quick guess is that it not an R problem, but with your version of
EXCEL. What version are you using, since this used to be a limitation
of Excel. Just tried to output an object with 1436 columns and read
it fine into 2007 version of EXCEL.
On Sun, Jan 15, 2012 at 10:09 AM, mukul purva wrote:
On 14.01.2012 20:41, Duncan Murdoch wrote:
On 12-01-13 11:48 AM, Sarah Goslee wrote:
...
I hope that it was a momentary glitch; greater disagreement between
Nabble
and the email list will cause all sorts of fun. If the interface,
whatever it is,
starts stripping out code? I'll have to quit ans
On 12.01.2012 17:38, Frank Harrell wrote:
As a slight aside, Tibco/Spotfire originally planned to provide a capability
to load R packages into S-Plus. This always seemed to me to be a hard thing
to do, and if my understanding is correct, this proved to be too difficult
to do in S-Plus, at lea
On 01/15/2012 09:10 AM, Barry Rowlingson wrote:
On Sun, Jan 15, 2012 at 4:40 PM, Francisco wrote:
Hello,
I have to write a big sentence with cat() and I would like that R
automatically adds a new line when it is needed (when the text arrives at
the end of the window), the same as Windows Notepa
see the 'fill' argument for cat().
On Sun, Jan 15, 2012 at 12:10 PM, Barry Rowlingson
wrote:
> On Sun, Jan 15, 2012 at 4:40 PM, Francisco
> wrote:
>> Hello,
>> I have to write a big sentence with cat() and I would like that R
>> automatically adds a new line when it is needed (when the text arr
On Sun, Jan 15, 2012 at 4:40 PM, Francisco wrote:
> Hello,
> I have to write a big sentence with cat() and I would like that R
> automatically adds a new line when it is needed (when the text arrives at
> the end of the window), the same as Windows Notepad does (Word Wrap).
> How could I do?
A li
Dear Jonas,
Thanks for you your suggestion. I tried double quotes (as in following
code). It still does not work. Attached is the data.
library(gamlss)
data=read.csv("D:\\lzg\\jointmodel\\data.csv",header=T)
data$ID<-factor(data$ID)
par.plot(factpal~timetodeath2,data=data,sub=ID,color=FALSE,ylim=
Hello,
I have to write a big sentence with cat() and I would like that R
automatically adds a new line when it is needed (when the text arrives
at the end of the window), the same as Windows Notepad does (Word Wrap).
How could I do?
Thank you
F.
__
Thaks Ryusuke,
One question, is it possible to have an increased quality adjusted survival
during a period of time? I ask that because I saw a paper published in a
cientific journal with a adjusted survival curve that increase during a period
and dicrease after that.
Best regards
Pedro Mota V
hello,
i hav a prob in R lang. i want to do correlation of data frame
22810(gene) rows and 1436 colums(experiment) when i covert this file
in csv or xls format it reads only 1024 cloumns. n when i do
correlation of data mean 22810 *22810 matrix made in terminal then i
export in csv or xls b
Hello,
I am using urca package to run cointegration. I would like to find the
standard error in the (normalized, Johansen) cointegration relationship. How
can I do it?
As far as I know, The function "cajorls" in the "urca" package provides
the normalized cointegrating relationships. Never
Yes, I forgot to divide the weights by the sum of the weights (and multiply by
100) for weights.rma.mh(). This bug was pointed out to me a few weeks ago and
this will be changed in the next version of the package.
Best,
Wolfgang
--
Wolfgang Viechtbauer, Ph.D., Statistician
Department of Psychi
I've benefited from this list with input on how to build up a
symmetrical matrix. The purpose of that query was to work with the
output from the MINE routine posted at www.exploredata.net
To the extent it helps others, here is the script that I was working on
an which turns a given MINE outpu
At first, I thought that RDF and SDMX were two competing standards and
was disheartened, but it appears that there is collaboration between
them, yay!
http://groups.google.com/group/publishing-statistical-data/browse_thread/thread/531b1b5a73397c1c?pli=1
On 01/15/2012 08:31 AM, Benjamin Weber w
Le vendredi 13 janvier 2012 à 15:49 +0100, Julien Velcin a écrit :
> Dear all,
>
> I have some troubles using the stemming algorithm provided by the tm
> (text mining) + Snowball packages.
> Here is my config:
>
> MacOS 10.5
> R 2.12.0 / R 2.13.1 / R 2.14.1 (I have tried several versions)
>
>
You can prepare only the so-called Partitioned Survival Analysis, but those are
without the quality of life weights. I describe Partitioned analysis in my
paper in The American Statistician and give citations to description of the
method in a Biometrics paper.
There are several variations on q
On Jan 15, 2012, at 3:28 AM, Philip Robinson
wrote:
> Hi,
>
> I am struggling, I have 2 lists with shared elements, one ~600, one
> ~1000, and I need to determine the difference between them.
>
> They are character strings, and to use setdiff(), or unique() I need
> vectors.
You can have ch
Yes, R-devel would be the right mailing list for this discussion.
As some people pointed out, the problem definition is vague. This was
to encourage people to share their *different* perceptions about the
problem and to get to some extent a consensus.
My starting point has come from my mind, conse
paper for reference
http://www.google.com.hk/url?sa=t&rct=j&q=Package+iSQoL&source=web&cd=1&ved=0CCYQFjAA&url=http%3A%2F%2Fwww.stat.sinica.edu.tw%2Fjshwang%2Fweb%2Fwp-content%2Fplugins%2Fdownload-monitor%2Fdownload.php%3Fid%3D2&ei=fcMST6CgJ4yIrAfb_bT9AQ&usg=AFQjCNG4elXcSmsAElv2M5bHoqTNf8qXGQ&cad=rj
Hello Tall,
sorry for late reply.
I meant just the direction of the closing parentheses.
This is the way it should be (and is on my linux system) :
http://myup.ir/images/93380129091837074902.png
This is the way it is (on windows system)
http://myup.ir/images/40188837660458525731.png
On 1/3/12, T
You need to read ?Sys.setlocale (surely part of the homework the R
posting guide asked of you).
It is vital that you give the 'at a minimum' information requested in
the posting guide when asking such questions, and we also absolutely
need to know what graphics device you are trying to use.
why cann't you use setdiff or unique? in the sample data how do you tell the
difference? do you compare the whole string, or partial? a better definition
of your problem and what you have tried would help. it would seem like there
is nothing the same between your sample data.
Sent from my iP
Dear R Helpers,
I want to localize my plots, i.e. the numbers by x & y axis be
Persian, using Persian numerals and Persian decimal separator. I
change the locale to fa_IR.utf8, but nothing on plots change. I can
change the numerals shaping to Persian ones (۱۲۳۴ instead of 1234)
using some non-stan
Hi,
I am struggling, I have 2 lists with shared elements, one ~600, one
~1000, and I need to determine the difference between them.
They are character strings, and to use setdiff(), or unique() I need
vectors. I don't know how to force these character strings into a form
where you can use functio
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