Re: [R] trouble with library(FEAR) and libgfortran.so.1

2011-09-24 Thread Mario Valle
1) you can try to make a symbolic link to libgfortran.so.3 and call it libgfortran.so.1 Sometimes it works. 2) you can try to downgrade your version of gfortran 3) you can ask to the package maintainer to recompile FEAR with a more modern gfortran. Hope it helps

[R] trouble with library(FEAR) and libgfortran.so.1

2011-09-24 Thread John P. Burkett
Running R version 2.13.1 under Ubuntu 10.10 (kernel version 2.6.35-30-generic) on a x86-64 laptop with gfortran 4.4, I'm trying to install and use the FEAR package from http://www.clemson.edu/economics/faculty/wilson/Software/FEAR/fear.html. I downloaded the the FEAR 1.15 package for 64-bit Linux (

Re: [R] maptools::sunriset() daylight savings to stardard time change

2011-09-24 Thread Jeff Newmiller
Sys.setenv(TZ="Etc/GMT+8") will use standard time only for time calculations. --- Jeff Newmiller The . . Go Live... DCN: Basics: ##.#. ##.#. Live Go... Live: OO#.. Dead: OO#.. Playing Research Engineer (Solar/Batteries

Re: [R] Tobit Fixed Effects

2011-09-24 Thread Arne Henningsen
On 25 September 2011 00:16, Felipe Nunes wrote: > Hi Arne, > my problem persists. I am still using censReg [version - 0.5-7] to run a > random effects model in my data (>50,000 cases), but I always get the > message. > tob7 <- censReg(transfers.cap ~ pt.pt + psdb.pt + pt.opp + pt.coa + psdb.coa >

Re: [R] function censReg in panel data setting

2011-09-24 Thread Arne Henningsen
On 24 September 2011 23:58, felipnunes wrote: > Hi guys, > > did you figure out a way to solve your problem, Igor? > > I'm still trying to understand what's happening to my estimations. My data > set is also big (>50,000) and I get the same error: > > Error in maxNRCompute(fn = logLikAttr, fnOrig

Re: [R] Tobit Fixed Effects

2011-09-24 Thread Joshua Wiley
On Sat, Sep 24, 2011 at 4:55 PM, Felipe Nunes wrote: > That was a great idea, Josh! > I found a problem even when I tried a simple model. Do you have any idea > why? I forgot you were using a pdata.framecensReg hands off estimation in part to plm, which wants between and within effects. Even

Re: [R] Tobit Fixed Effects

2011-09-24 Thread Felipe Nunes
That was a great idea, Josh! I found a problem even when I tried a simple model. Do you have any idea why? tob6 <- censReg(transfers.cap ~ 1, left=0, right=Inf, method="BHHH", nGHQ=20, iterlim=1, data = pdata2) Error in uniqval[as.character(effect), , drop = F] : incorrect number of dimens

Re: [R] function censReg in panel data setting

2011-09-24 Thread felipnunes
Hi guys, did you figure out a way to solve your problem, Igor? I'm still trying to understand what's happening to my estimations. My data set is also big (>50,000) and I get the same error: Error in maxNRCompute(fn = logLikAttr, fnOrig = fn, gradOrig = grad, hessOrig = hess, : NA in the ini

Re: [R] comparing mixed binomial model against the same model without random effect

2011-09-24 Thread Billy
Hello Simone, Given that your response variable is binary and, consequently, you should use generalized models, just occurs to me a comparison between a Generalized Linear Model (the model without the random effect) and a Generalized Linear Mixed Model (the model with the random effect). You coul

[R] maptools::sunriset() daylight savings to stardard time change

2011-09-24 Thread Folkes, Michael
Hello all, After beating my head against the wall for a few hours, I give up. I have two problems. 1. If I use seq() to generate a POSIXct series that crosses a daylight savings to stardard time change I get two values for the first day of change. The time change is Nov 6,2011. The value for No

Re: [R] two ecdf in the same figure

2011-09-24 Thread Joshua Wiley
Or just ask let the second plot know to add it to the existing plot: set.seed(2) plot(ecdf(rnorm(50))) plot(ecdf(rnorm(50,,2)), add = TRUE, pch = 2) legend(-2.9, .95, legend = c("First ECDF", "Second ECDF"), pch = c(16, 2)) note the limits are set by the first plot, so watch out for that. You ma

Re: [R] Tobit Fixed Effects

2011-09-24 Thread Joshua Wiley
Can you fit a simpler model successfully? I would play around with all your RHS variables to try to see if there is any particular one that causes the estimation problems. Two ways I would do this would be to drop them one at a time, or to start from an intercept only model (i.e., transfers.cap ~

Re: [R] Tobit Fixed Effects

2011-09-24 Thread Felipe Nunes
Hi Arne, my problem persists. I am still using censReg [version - 0.5-7] to run a random effects model in my data (>50,000 cases), but I always get the message. tob7 <- censReg(transfers.cap ~ pt.pt + psdb.pt + pt.opp + pt.coa + psdb.coa + pib.cap + transfers.cap.lag + pib.cap + ifdm + log(popula

Re: [R] Cross Spectrum : Conversion of 2-D spectrum into a single complex array

2011-09-24 Thread Ben Bolker
Joseph Park att.net> writes: > > Perhaps this question is inappropriate or posted to the wrong list? > > Any guidance would be appreciated. Thanks. > [snip] This seems like a perfectly reasonable question. Sometimes people just don't bite. Ben Bolker _

[R] Can't reliably use RefClass methods in Snowfall

2011-09-24 Thread henry
Greetings, I am trying to use Reference Class methods in Snowfall, using R 2.12.1 on Ubuntu Natty. Using then directly seems to work (stanza 2 below), but using them indirectly does not (stanza 3 below). I get an "attempt to apply non-function" error. In addition to exporting the instance

Re: [R] two ecdf in the same figure

2011-09-24 Thread R. Michael Weylandt
What version of R are you using? x = ecdf(rnorm(50)); y = ecdf(rnorm(50)) plot(x); lines(y, col=2) works for me on R 2.13.1. Specifically, there is a lines.stepfun method (albeit non-visible) which handles this. Michael On Sat, Sep 24, 2011 at 12:23 PM, Adel ESSAFI wrote: > Hello, > > is ot

Re: [R] Cross Spectrum : Conversion of 2-D spectrum into a single complex array

2011-09-24 Thread Joseph Park
Perhaps this question is inappropriate or posted to the wrong list? Any guidance would be appreciated. Thanks. --- On Fri, 9/23/11, Joseph Park wrote: > From: Joseph Park > Subject: Cross Spectrum : Conversion of 2-D spectrum into a single complex > array > To: r-help@r-project.org > Date: F

[R] two ecdf in the same figure

2011-09-24 Thread Adel ESSAFI
Hello, is ot possible to draw two ecdf of vectors (say s1 and s2) on the same figire with R. plot function draws a new plot and there is no function like points or lines to draw a second ecdf on the figure. Regards -- *PhD candidate in Computer Science Address 3 avenue lamine, cité ezzahra, S

Re: [R] Supporting R/Membership

2011-09-24 Thread David Cross
For my part, knowing all of my (mostly bad) habits, I would only donate if I could do it online. And I would be happy to donate! Cheers David Cross d.cr...@tcu.edu www.davidcross.us On Sep 24, 2011, at 10:43 AM, Joshua Wiley wrote: > Dear R Users, > > I know issues like this have come up

[R] Supporting R/Membership

2011-09-24 Thread Joshua Wiley
Dear R Users, I know issues like this have come up in the past. I am wondering how many people would be interested in an online mechanism for donating to the R Foundation or for becoming supporting members. Right now, the link for it is somewhat buried on the R home page, and once you get there,

Re: [R] Help with Integration Output

2011-09-24 Thread B77S
It is not simply the answer, it is a list str(integrate(dnorm, -1.96, 1.96)) List of 5 $ value : num 0.95 $ abs.error : num 1.05e-11 $ subdivisions: int 1 $ message : chr "OK" $ call: language integrate(f = dnorm, lower = -1.96, upper = 1.96) - attr(*, "class")= chr "i

Re: [R] comparing mixed binomial model against the same model without random effect

2011-09-24 Thread lincoln
Any answer to this? I really need to compare a mixed model with binomial error against the same model without the random effect. I would use anova() but I don't know how to specify both models in order to make them comparable. Thanks for any answer Simone -- View this message in context: http:

[R] Help with Integration Output

2011-09-24 Thread ChrisQ
Hi, I need to do a calculation in R which involves adding the estimate of a numerical integration with another number - however, if I add the number to the output of the intergrate function (which when run on its own provides me with a number with error), I get the message 'non-numeric argument to

Re: [R] ncdf - install error

2011-09-24 Thread David William Pierce
2011/9/24 Muhammad Rahiz : > Dear all, > > I'm having issues with the installation of the ncdf package. It returns a > non-zero exit status. Can anyone suggest what I should do next? FYI, I do > not have problems installing other packages. >[...] > /usr/bin/ld: /usr/local/lib/libnetcdf.a(attr.o): r

Re: [R] help

2011-09-24 Thread peter dalgaard
Please read instructions CAREFULLY. This is the R-help mailing list, not R-help-request. People on this list are not interested in an empty mail, much less one that is followed by an entire digest message! On Sep 24, 2011, at 13:56 , Mathew Brown wrote: > > Mathew Brown > Institute of Biocl

[R] help

2011-09-24 Thread Mathew Brown
Mathew Brown Institute of Bioclimatology University of Göttingen Büsgenweg 2 37077 Göttingen, Germany t: +49 551 39 9359 mathew.br...@forst.uni-goettingen.de On 9/24/2011 6:00 PM, r-help-requ...@r-project.org wrote: Send R-help mailing list submissions to r-help@r-project.org To subsc

[R] 45 degress line in zoo plot

2011-09-24 Thread Manta
Dear all, I am not able to draw a 45 degrees line in a zoo plot. The time index is a sequence of 15 min bins from 7 in the morning to 18:45 in the evening. Thanks, Marco -- View this message in context: http://r.789695.n4.nabble.com/45-degress-line-in-zoo-plot-tp3839182p3839182.html Sent from t

[R] Assessing prediction performance of SVM using e1071 package

2011-09-24 Thread Jokel Meyer
Dear R-Users! I am using the svm function (e1071 package) to classify two groups using a set of 180 indicator variables. Now I am confused about the cross-validation procedure. (A) On one hand I use the setting cross=10 in the svm function to run 10 cross-validation iterations and to get an estim

Re: [R] R-help Digest, Vol 103, Issue 23

2011-09-24 Thread Richard Valliant
I will be out of the office Sep 32-28, 2011, with limited email access. For immediate help, please call the JPSM main number, 301-314-7911. __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide

Re: [R] R-help Digest, Vol 103, Issue 23

2011-09-24 Thread mihalicza . peter
Szeptember 12-től 26-ig irodán kívül vagyok, és az emailjeimet nem érem el. Sürgős esetben kérem forduljon Kárpáti Edithez (karpati.e...@gyemszi.hu). Üdvözlettel, Mihalicza Péter I will be out of the office from 12 till 26 September with no access to my emails. In urgent cases please contact

[R] ggplot2: expression() in legend labels?

2011-09-24 Thread Casper Ti. Vector
Is there any way to use expression() in legend labels with ggplot2? It seems that things like > scale_shape_manual(value = c( > x = expression(italic(x)), > y = expression(italic(y)) > )) don't work. Thanks very much :) -- Using GPG/PGP? Please get my current public key (ID: 0xAEF6A134,

Re: [R] Kolmogorov-Smirnov test

2011-09-24 Thread rommel
Dear Dr. Snow,   Thank you for your reply.   1. Are you doing the 2 sample KS test? Comparing if 2 samples come from the same distribution? -Yes, I am doing 2-sample KS test   2. With 3,000 points you will still likely have power to find meaningless differences, what exactly are you trying