On 6 September 2011 08:01, KnifeBoot wrote:
> Can't installe packag maDB or limma.
Which R version, and what platform are you using?
--
Sent from my mobile device
Envoyait de mon telephone mobil
__
R-help@r-project.org mailing list
https://stat.ethz.
Can't installe packag maDB or limma.
Error is shown as
Using R version 2.13.1, biocinstall version 2.8.4.
Installing Bioconductor version 2.8 packages:
Is there any other way to draw volcano plot ?
Thanks
[[alternative HTML version deleted]]
__
The text seems to be white, reformatted:
On Tue, Sep 6, 2011 at 8:53 AM, Eran Eidinger wrote:
> Thank you Sarah and David,
>
> I only used a simple plot, and remembered to dev.off().
> attached is the session:
>
> > plot(c(1,2,3),c(3,2,4))> jpeg("test.jpg")> dev.off()RStudioGD
> 2 > ses
Thank you Sarah and David,
I only used a simple plot, and remembered to dev.off().
attached is the session:
> plot(c(1,2,3),c(3,2,4))> jpeg("test.jpg")> dev.off()RStudioGD
2 > sessionInfo()R version 2.13.1 (2011-07-08)
Platform: x86_64-pc-mingw32/x64 (64-bit)
locale:
[1] LC_COLLATE=Hebre
Hi, I answered this question before in this post:
http://r.789695.n4.nabble.com/Regressions-with-fixed-effect-in-R-td2173314.html
, specifically in my message from May 11, 2010; 4:30pm.
However, I believe the newer version of plm shows an R-squared, which should
be the within R-squared. Why the pr
Dear Igors
On 5 September 2011 23:58, Igors wrote:
> I have a problem estimating Random Effects model using censReg function.
>
> small part of code:
>
> UpC <- censReg(Power ~ Windspeed, left = -Inf, right =
> 2000,data=PData_In,method="BHHH",nGHQ = 4)
>
> Error in maxNRCompute(fn = logLikAttr,
Thanks, David. You suggestion worked very well. The par() in optim() only
takes one argument, so I combine it into a vector. Now, I will run it with
my actual code and see what happens.
Colin
--
View this message in context:
http://r.789695.n4.nabble.com/In-optim-function-parameter-in-par-miss
Dear colleagues,
each time I use htmlParse, R crashes or hangs. The url I'd like to parse is
included below as is the results of a series of basic commands that describe
what I'm experiencing. The results of sessionInfo() are attached at the bottom
of the message.
The thing is, htmlTreeParse a
On a Red Hat Linux cluster I am seeing the following after multiple
other packages were successfully installed. The error seems to suggest
that RNetCDF.o was not copied to the appropriate lib folder. The admin
user performing the install has the required privileges to perform the
install. Words of
Hi Ben,
I've attached the data and Tinn-R file I've been using to run it,
thank you for the fast response. Please let me know if you see
something odd, I have no idea where to begin looking
-Rob
On Mon, Sep 5, 2011 at 5:30 PM, bbolker [via R]
wrote:
> RTSlider gmail.com> writes:
>
>>
>> Hello,
>
Hello to everybody,
Somebody know how I can apply the instruction (regband) of the package (locfit)
to a multivariate covariate. In the instructions states that the formula has to
have only one predictor.
How can I use that when I have an unknown function with two predictors, m(X,Z)?
Is there
Hello all,
I have a problem estimating Random Effects model using censReg function.
small part of code:
UpC <- censReg(Power ~ Windspeed, left = -Inf, right =
2000,data=PData_In,method="BHHH",nGHQ = 4)
Error in maxNRCompute(fn = logLikAttr, fnOrig = fn, gradOrig = grad,
hessOrig = hess, :
N
On 11-09-05 02:13 PM, Billy wrote:
> Dear Dr. Ben Bolker and 'JLucke',
>
> Thanks for your comments, but I'm still facing some problems.
> For example, using the gls() function, I receive an error message and
> I'm not sure I'm writing the arguments in the right way.
Well, (if you still need he
On 05/09/11 21:26, Deepayan Sarkar wrote:
1. The `official' way to get panel arguments is trellis.panelArgs(); e.g.,
p<- histogram(~rnorm(100) | gl(2, 50), type = "density")
str(trellis.panelArgs(p, 2))
List of 5
$ x : num [1:50] 0.277 1.144 1.13 -0.912 -0.892 ...
$ breaks
RTSlider gmail.com> writes:
>
> Hello,
> I'm running linear regressions using the following script where I have
> separated out species using the "IDtotsInLn" identifier
>
> x<-read.csv('tbl02TOTSInLn_ENV.csv', header=T)
> x
> attach (x)
Hi,
On Mon, Sep 5, 2011 at 6:46 AM, privat NDOUTOUME wrote:
> Hi,
>
> I'm working on multiple logistic regression. I used the function vglm
> (Package VGAM) in R. Now, i'd like to implent this function (vglm) in C++.
> Could someone help me or send me the algorithm.
Download and extract the sou
> -Original Message-
> From: r-help-boun...@r-project.org [mailto:r-help-boun...@r-project.org]
> On Behalf Of peter dalgaard
> Sent: Sunday, September 04, 2011 11:09 AM
> To: warc
> Cc: r-help@r-project.org
> Subject: Re: [R] what is wrong with my quicksort?
>
>
> On Sep 4, 2011, at 13:1
Do you mean 'how do you execute the script?'?
If so, the executable is called R. You might mean R -f .R , assuming R is on
your path.
S
> -Original Message-
> From: r-help-boun...@r-project.org
> [mailto:r-help-boun...@r-project.org] On Behalf Of Pariksheet
> Sent: 05 September 2011
Hello everybody,
Trying to install the package gmp I get the following errors and fail to
install:
Error in dyn.load(file, DLLpath = DLLpath, ...) :
unable to load shared object
'/usr/local/lib/R/site-library/gmp/libs/gmp.so':
libgmp.so.10: cannot open shared object file: No such file or dire
On Sep 5, 2011, at 11:41 AM, David Winsemius wrote:
On Sep 5, 2011, at 10:30 AM, colstat wrote:
Hi,
First time using the optim(), can someone please tell me what I am
doing
wrong? The error looks like this
Error in .Internal(pnorm(q, mean, sd, lower.tail, log.p)) :
'sd' is missing
Yo
On 05.09.2011 12:04, Pariksheet wrote:
Hi ,
I have created .R file which connects to Teradata database and then does
some manipulation and produces the output graph.
How to create executable for .R file?
You cannot. Or do you mean you want to create an R package? In any case,
R code is alw
On Sep 5, 2011, at 11:14 AM, Eran Eidinger wrote:
Sorry guys, just removed, the "at" prameters. The warnings are gone
now, but
I still get an empty image, no matter which function i use (pdf, jpeg,
bmp...)
Any clue?
The most common error is failing to call dev.off() after the plotting
is
Dear all,
I was wondering if anyone can help? I am an R user but recently I have
resorted to SAS to calculate the probability of the event (and the associated
confidence interval) for the Cox model with combinations of risk factors. For
example, suppose I have a Cox model with two binary vari
Hello,
I'm running linear regressions using the following script where I have
separated out species using the "IDtotsInLn" identifier
x<-read.csv('tbl02TOTSInLn_ENV.csv', header=T)
x
attach (x)
library(lme4)
rInLn<-lm
On Sep 5, 2011, at 10:30 AM, colstat wrote:
Hi,
First time using the optim(), can someone please tell me what I am
doing
wrong? The error looks like this
Error in .Internal(pnorm(q, mean, sd, lower.tail, log.p)) :
'sd' is missing
You should be using a textbook. Which one are you consul
Uwe Ligges statistik.tu-dortmund.de> writes:
>
> I have not really looked into the details of the lengthy and almost
> unreadable code below. In any case, there are good reasons why numerics
> software typically uses Fisher scoring / IWLS in order to fit GLMs.
>
> And if your matrix is th
On 05.09.2011 16:08, Kehl Dániel wrote:
Dear Community,
I know this is not the place to ask WinBUGS questions, but I did not get
any answers on other lists.
I am rather new to the BUGS language and to bayesian modeling, excuse me
for probably simple questions.
I have to conduct a bayesian meta
Elizabeth C Eadie unm.edu> writes:
>
>
> R glmmADMB question
> I am trying to use glmm.admb (the latest alpha version
> from the R forge website 0.6.4) to model my count data
> that is overdispersed using a negative binomial family but
> keep getting the following error message:
>
> Error
Hi Eran,
To be able to help, we need at a minimum a reproducible example and the
output of sessionInfo().
Sarah
On Mon, Sep 5, 2011 at 11:14 AM, Eran Eidinger wrote:
> Sorry guys, just removed, the "at" prameters. The warnings are gone now, but
> I still get an empty image, no matter which func
Sorry guys, just removed, the "at" prameters. The warnings are gone now, but
I still get an empty image, no matter which function i use (pdf, jpeg,
bmp...)
Any clue?
Thanks,
Eran.
On Mon, Sep 5, 2011 at 6:09 PM, Eran Eidinger wrote:
> Hello,
>
> I've been using jpeg(), bmp() and pdf() to captur
Hello,
I've been using jpeg(), bmp() and pdf() to capture plots.
I've used the parameter "at" in a plot, to define the tickmarks.
It works fine on screen, but when I try to print it to a file, it gives a
warning:
"at" is not a graphical parameter
and prints an empty figure. Can you help?
Than
Hello,
I trying to find a way to calculate a bivariate bandwidth for a bivariate local
polynomial regression and I have a question.
Somebody know if I can use the instruction "dpill" to do it?
When I read the instructions I see that "x" must be a vector of variables, but
if I state "x" is
Dear Dr. Ben Bolker and 'JLucke',
Thanks for your comments, but I'm still facing some problems.
For example, using the gls() function, I receive an error message and I'm
not sure I'm writing the arguments in the right way.
Instead, I thought about my original models and realized that I was
modelli
Hi,
I'm working on multiple logistic regression. I used the function vglm (Package
VGAM) in R. Now, i'd like to implent this function (vglm) in C++.
Could someone help me or send me the algorithm.
Thanks in advance,
Quentin
[[alternative HTML version deleted]]
___
hello... I am trying to get this code to work, but as I get to the predict
command, it displays an error due to the length of the data sets from the
removal of the NA's. Here is the data, and the code that I am using so
far, if you run it, you'll see the error pop up please help me to get
aro
Hi,
First time using the optim(), can someone please tell me what I am doing
wrong? The error looks like this
Error in .Internal(pnorm(q, mean, sd, lower.tail, log.p)) :
'sd' is missing
An example of the error
dat = c(20, 19, 9, 8, 7, 4, 3, 2)
dat_mu=mean(dat)
dat_s=sd(dat)
max.func = funct
Dear All,
The following code save my graphs as pdf:
pdf("j:/mix.pdf", width = 18, height = 16)
grid.newpage()
pushViewport(viewport(layout = grid.layout(3,1)))
vplayout <- function(x, y)
viewport(layout.pos.row = x, layout.pos.col = y)
print(Aplot, vp = vplayout(1, 1))
print(Bplot, vp
Hi ,
I have created .R file which connects to Teradata database and then does
some manipulation and produces the output graph.
How to create executable for .R file?
Thanks
Pariksheet
--
View this message in context:
http://r.789695.n4.nabble.com/How-to-create-R-executable-tp3790883p3790883.htm
Hi,
I'm working on multiple logistic regression. I used the function vglm
(Package VGAM) in R. Now, i'd like to implent this function (vglm) in C++.
Could someone help me or send me the algorithm.
Thanks in advance,
Quentin
--
View this message in context:
http://r.789695.n4.nabble.com/Impl
Sorry about the indentation, it seems I'm doing some mistake when sending
the e-mail. I've tried to indent here like the Google's style, but it
becomes a garbage in the e-mail.
On Mon, Sep 5, 2011 at 11:27 AM, . . wrote:
> Hi, continuing the improvements...
>
> I've prepared a new code:
>
> ddae
Hi, continuing the improvements...
I've prepared a new code:
ddae <- function(individuals, frac, sad, samp="pois", trunc=0, ...) {
dots <- list(...)
Compound <- function(individuals, frac, n.species, sad, samp, dots) {
print(c("Size:", length(individuals), "Compound individuals:",
individ
Dear All
I am attempting some power analyses, based on simulated data.
My experimental set up is thus:
Bleach: main effect, three levels (control, med, high), Fixed.
Temp: main effect, two levels (cold, hot), Fixed.
Main effect interactions, six levels (fixed)
For each main-effect combination I ha
Dear Community,
I know this is not the place to ask WinBUGS questions, but I did not get
any answers on other lists.
I am rather new to the BUGS language and to bayesian modeling, excuse me
for probably simple questions.
I have to conduct a bayesian meta-analysis of some data. We have
collecte
i finally found the XML.zip:
http://www.stats.ox.ac.uk/pub/RWin/bin/windows/contrib/2.14/
and thanks to you pointing me at the URL of the RCurl.zip:
http://www.stats.ox.ac.uk/pub/RWin/bin/windows/contrib/2.13/RCurl_1.6-10.1.zip
i was able to to install the wanted RGooglesDoc package successfully
Hi,
On Sun, Sep 4, 2011 at 9:25 AM, John Clark wrote:
> Dear R experts:
>
> Here is my problem, just hard for me...
>
> I want to generate multiple datasets, then apply a function to these
> datasets and output corresponding output in single or multiple dataset
> (whatever possible)...
>
> # my e
On 05.09.2011 14:52, Kay Cecil Cichini wrote:
internet connection exists - dont' know why, but i can't set to CRAN
mirror - maybe because i run R from an usb-stick, firewall or whatever.
Probably not correctly configured proxy setting?
thus, install.packages("RCurl_0.91-0.tar.gz") won't wor
fixed @ R-forge. New version should appear on CRAN soon.
Thanks for the report!
Torsten
-- Forwarded message --
Date: Sat, 3 Sep 2011 23:56:35 +0200
From: Ulrich Halekoh
To: "r-help@r-project.org"
Subject: [R] glht (multcomp): NA's for confidence intervals using
univaria
internet connection exists - dont' know why, but i can't set to CRAN
mirror - maybe because i run R from an usb-stick, firewall or whatever.
thus, install.packages("RCurl_0.91-0.tar.gz") won't work.
a zip-file does not exist, only the tar.gz file.
so i tried to install from the source that i
On 05.09.2011 13:52, Kay Cecil Cichini wrote:
hi,
i'd like to install the package "RGoogleDocs ".
i downloaded to path "E:/R/R-2.13.0/library/RCurl_0.91-0.tar.gz"
i run R from an usb-stick and can't get the install.packages() prompt to
run correctly - can anyone help with this?
1. Why not
hi,
i'd like to install the package "RGoogleDocs ".
i downloaded to path "E:/R/R-2.13.0/library/RCurl_0.91-0.tar.gz"
i run R from an usb-stick and can't get the install.packages() prompt
to run correctly - can anyone help with this?
thanks,
kay
sessionInfo()
R version 2.13.0 (2011-04-13
Hi R-helpers,
I have two questions I hope you could help me with them:
In the plm package how can I calculate the R2 within, R2 between and R2
overall? Is there any special reason to not display these values?
When using first differences do I need to have some special care with
dummies
Hello UseRs,
I've somehow general questions.
I've got a dataset which shows signs of heteroscedasticity and non-normality in
errors if I do a normal linear regression of the form Y~X. So to things came
into my mind, either transforming the variables (log or log10) or using robust
regression. So
it is useful if you need to process your data 'byte by byte'. I have used it
to read in a large file and then translate one byte value to another. you can
learn by creating some small script and processing example data with them. do
you have a specific application tha you want to use it on?
Dear all,
I am using glm with quasibinomial. What does the following error message mean:
Error in eval(expr, envir, enclos) : y values must be 0 <= y <= 1
Does it mean that the predictor variable should only have zero and one or it is
also possible to have continuous values between zero and one
On 05.09.2011 09:40, Katerina Karayianni wrote:
Yes, you were right about the make install command for R, now it is ok.
The new issue is that when the R script is trying to generate a plot
file, the following error occurs
Error in function (file = ifelse(onefile, "Rplots.pdf",
"Rplot%03d.pdf"
On Thu, Sep 1, 2011 at 10:29 AM, Rolf Turner wrote:
>
> 'Scuse me, but I don't see anything in your example relating to what the OP
> asked for. She wanted to get at the ``actual data defining the histogram'',
> which
> I interpret as meaning the bar heights (the percentages, density values, or
>
Hello,
I want to use the SnowballStemmer on a collection of plain text documents.
However, when I apply it to my corpus using the tm_map function it only stems
the last word of each document (The problem is the for wordStem and
stemDocument does not work at all). An example:
> path <- c("c:
Yes, you were right about the make install command for R, now it is ok.
The new issue is that when the R script is trying to generate a plot file,
the following error occurs
Error in function (file = ifelse(onefile, "Rplots.pdf", "Rplot%03d.pdf"), :
cannot open file 'Rplots.pdf'
Calls: plot .
Hi Bill,
I once modelled a hysteresis phenomenon (on binary data) with a simple
logistic model. I am not sure I understand how this pattern appears in
your data, but in my previous analyses, it appeared as an order effect:
The response increased in probability later with increasing than with
Well, I guess this doesn't make necessary for me to prepare a report with the
CatDyn package.
However, I am available to test a new optimx R-forge version with my package.
Cheers
Rubén
--
Dr. Ruben H. Roa-Ureta
Senior Researcher, AZTI Tecnalia,
Marine Research Division,
Txatxarramendi Ugartea z
60 matches
Mail list logo
