Re: [R] Regarding {KernSmooth} - Can a package on CRAN have non GPL copyrights?

2011-02-12 Thread Prof Brian Ripley
On Sat, 12 Feb 2011, Joshua Wiley wrote: AFAIK CRAN does not explicitly require use of a GPL license (though obviously the license needs to allow at least free access to the packages and source). GPL and the other licences are about distribution. CRAN requires a licence to allow it to distri

Re: [R] Changes titles in ggplot2 plot

2011-02-12 Thread Felipe Carrillo
you can just probably add + labs(x="Time Elapsed,y="Predicted Probability")   Felipe D. Carrillo Supervisory Fishery Biologist Department of the Interior US Fish & Wildlife Service California, USA http://www.fws.gov/redbluff/rbdd_jsmp.aspx - Original Message > From: Shige Song > To:

[R] Changes titles in ggplot2 plot

2011-02-12 Thread Shige Song
Dear Colleagues, In the following simple ggplot2 code: m <- ggplot(d.fig, aes(time, prob)) m + stat_summary(fun.data = "median_hilow", conf.int = .95, geom = "smooth") + facet_wrap(~ Cohort, nrow=1) + coord_cartesian(ylim = c(0, .03)) --

[R] calculate phase/amplitude of fourier transform function in R

2011-02-12 Thread sammyny
I did a fourier transform on a function in time domain to get the following functions in frequency domain (in latex): $Y_1[\omega] = \frac{1}{1-\phi_1 e^{-jw}}$ $Y_2[\omega] = \frac{1}{1-(\phi_1 + \phi_2)e^{-jw} +\phi_1\phi_2e^{-2jw}}$ How do I find the spectrum of this function for given $\phi

Re: [R] Test for equivalence

2011-02-12 Thread Greg Snow
Does it make sense for you to combine the 2 data sets and do a 2-way anova with treatment vs. control as one factor and experiment number as the other factor? Then you could test the interaction and treatment number factor to see if they make a difference. -- Gregory (Greg) L. Snow Ph.D. Stat

Re: [R] out of sample forecast

2011-02-12 Thread Gabor Grothendieck
On Sat, Feb 12, 2011 at 4:08 PM, Paka yag wrote: > >   Hello > > I have model that is: lm(y~ lag(x, -1) + lag(z, -1) > so basically a time series regression with exogen variables > And I want to make rolling out of sample forecasts, meaning that: > > I first use a subsample (e.g. 1990 -1995) for e

[R] out of sample forecast

2011-02-12 Thread Paka yag
Hello I have model that is: lm(y~ lag(x, -1) + lag(z, -1) so basically a time series regression with exogen variables And I want to make rolling out of sample forecasts, meaning that: I first use a subsample (e.g. 1990 -1995) for estimating, then I perform a one step ahead forecast, then I a

Re: [R] Time unit in ts() and arima() functions

2011-02-12 Thread Jose-Marcio Martins da Cruz
Thanks for the hint. Helped a lot Gabor Grothendieck wrote: On Sat, Feb 12, 2011 at 7:48 AM, Jose-Marcio Martins da Cruz Functions which work with ts typically assume that a full cycle is represented by 1 unit so if a full cycle is a week then a week must be one unit and a day must be 1/7th

Re: [R] Data manipulation

2011-02-12 Thread mathijsdevaan
That worked great! Thanks! -- View this message in context: http://r.789695.n4.nabble.com/Data-manipulation-tp3302717p3303001.html Sent from the R help mailing list archive at Nabble.com. __ R-help@r-project.org mailing list https://stat.ethz.ch/mailm

Re: [R] Regarding {KernSmooth} - Can a package on CRAN have non GPL copyrights?

2011-02-12 Thread Joshua Wiley
AFAIK CRAN does not explicitly require use of a GPL license (though obviously the license needs to allow at least free access to the packages and source). On Sat, Feb 12, 2011 at 11:57 AM, Tal Galili wrote: > Hi all, > I'm not sure who to ask this, so I'm posting this here. > > I just ran: >  req

[R] use map.axes for a projected map

2011-02-12 Thread sybil
Hi, I am new to R and I want to display longitude and latitude for a projected map. map.axes won't do it since it only works for unprojected map. Can anyone help me with this? Thanks, Sybil -- View this message in context: http://r.789695.n4.nabble.com/use-map-axes-for-a-projected-map-tp3302918

Re: [R] extracting p-values from the Manova function (car library)

2011-02-12 Thread Bettina Kulle Andreassen
thanks that worked out tina :-) On Fri, 11 Feb 2011 12:21:19 -0500, Ista Zahn wrote: Hi, one approach is to modify getAnywhere(print.Anova.mlm) to return the information you want. Best, Ista On Fri, Feb 11, 2011 at 7:16 AM, Bettina Kulle Andreassen wrote: hi, i am not able to extract

Re: [R] linear models with factors

2011-02-12 Thread Bert Gunter
Ummm... The simple answer to your question: i want the estimates of coefficients of each level along with the intercept term(general effect).can anyone please help me? is no, because it's matrhematically impossible. You need to consult a local statistician or read up on linear mo

[R] Fw: Re: Linked List in R

2011-02-12 Thread Shing Hing Man
--- On Sun, 13/2/11, Shing Hing Man wrote: > From: Shing Hing Man > Subject: Re: [R] Linked List in R > To: "Martin Morgan" > Date: Sunday, 13 February, 2011, 4:49 > Hi Martin, >   Thanks for the pointer ! It seems quite involved to > create a > a linked list in the oo way. I need to read up

Re: [R] Regarding {KernSmooth} - Can a package on CRAN have non GPL copyrights?

2011-02-12 Thread Murray Stokely
On Sat, Feb 12, 2011 at 11:57 AM, Tal Galili wrote: > Hi all, > I'm not sure who to ask this, so I'm posting this here. > > I just ran: >  require(KernSmooth) > And got (I bolded the text): > Loading required package: KernSmooth > KernSmooth 2.23 loaded > *Copyright M. P. Wand 1997-2009* > Warning

Re: [R] Linked List in R

2011-02-12 Thread Martin Morgan
On 02/12/2011 11:08 AM, Shing Hing Man wrote: > Hi, > I am trying to create a linked list in R by defining a class Node which has > a instance variable Node. > > setClass("Node", representation(rate="numeric", nextNode="ANY")) > > The above works. But the following gives me a warning message.

[R] Regarding {KernSmooth} - Can a package on CRAN have non GPL copyrights?

2011-02-12 Thread Tal Galili
Hi all, I'm not sure who to ask this, so I'm posting this here. I just ran: require(KernSmooth) And got (I bolded the text): Loading required package: KernSmooth KernSmooth 2.23 loaded *Copyright M. P. Wand 1997-2009* Warning message: package 'KernSmooth' was built under R version 2.12.1 What do

Re: [R] Linked List in R

2011-02-12 Thread Jeff Newmiller
Why would you do this, when lists are fundamental types in R? --- Jeff Newmiller The . . Go Live... DCN: Basics: ##.#. ##.#. Live Go... Live: OO#.. Dead: OO#.. Playing Research Engineer (Solar/Batteries O.O#. #.O#. with

[R] Linked List in R

2011-02-12 Thread Shing Hing Man
Hi, I am trying to create a linked list in R by defining a class Node which has a instance variable Node. setClass("Node", representation(rate="numeric", nextNode="ANY")) The above works. But the following gives me a warning message. setClass("Node", representation(rate="numeric", nextNode="

Re: [R] Data manipulation

2011-02-12 Thread jim holtman
Will this do it for you: > x <- read.table(textConnection(" A B C + 1 1 a 1999 + 2 1 b 1999 + 3 1 c 1999 + 4 2 c 2001 + 5 2 d 2001 + 6 3 a 2004 + 7 3 b 2004"), header = TRUE) > closeAllConnections() > # add a tenure column > x$tenure <- ave(x$C, x$B, FUN = function(yr) yr - min(yr)

Re: [R] Data manipulation

2011-02-12 Thread Johannes Huesing
mathijsdevaan [Sat, Feb 12, 2011 at 03:00:18PM CET]: > > Hi, > > I have a dataset with info on individuals (B) that have been involved in > projects (A) during multiple years (C). The dataset contains three columns: > A, B, C. Example: >A B C > 1 1 a 1999 > 2 1 b 1999 > 3 1 c 1999 >

Re: [R] linear models with factors

2011-02-12 Thread David Winsemius
On Feb 12, 2011, at 11:16 AM, Ista Zahn wrote: Well, I may have been too hasty there. Actually the question was slightly improved. I think you are looking for ?contr.sum Another issue will arise besides what the switch of the contrasts -- The intercept is not a "general effect" but rather a

Re: [R] linear models with factors

2011-02-12 Thread Christophe Pallier
See ?contrasts and ?contr.sum By default, R uses contr.treatment, you want contr.sum Christophe On Sat, Feb 12, 2011 at 6:57 AM, ATANU wrote: > > i am trying to fit a linear model with both continuous covariates and > factors. When fitted with the intercept > term the first level of the factor

Re: [R] linear models with factors

2011-02-12 Thread Ista Zahn
Well, I may have been too hasty there. Actually the question was slightly improved. I think you are looking for ?contr.sum Best, Ista On Sat, Feb 12, 2011 at 3:55 PM, Ista Zahn wrote: > I already responded to your identical post yesterday, asking you to > actually ask a question. "can you please

Re: [R] linear models with factors

2011-02-12 Thread Ista Zahn
I already responded to your identical post yesterday, asking you to actually ask a question. "can you please help me?" is not enough. Best, Ista On Sat, Feb 12, 2011 at 5:57 AM, ATANU wrote: > > i am trying to fit a linear model with both continuous covariates and > factors. When fitted with th

Re: [R] Revolution Analytics reading SAS datasets

2011-02-12 Thread Charles Roosen
Another option is to use StatTransfer which is a commercial data exchange product from Circle Systems: http://www.stattransfer.com That's the basis of the import/export in S-PLUS: http://www.stattransfer.com/stattransfer/developers.html I wouldn't be surprised if it's al

[R] Test for equivalence

2011-02-12 Thread syrvn
Hi! is there a way in R to check whether the outcome of two different experiments is statistically distinguishable or indistinguishable? More preciously, I used the wilcoxon test to determine the differences between controls and treated subjects for two different experiments. Now I would like to

Re: [R] Time unit in ts() and arima() functions

2011-02-12 Thread Gabor Grothendieck
On Sat, Feb 12, 2011 at 7:48 AM, Jose-Marcio Martins da Cruz wrote: > > This question is surely trivial, sorry. I'm afraid I'm misunterpreting the > information I got with the documentation, and I'm a little bit confused. I'm > just an engineer with some little skills in statistics. > > Well, I ha

[R] Data manipulation

2011-02-12 Thread mathijsdevaan
Hi, I have a dataset with info on individuals (B) that have been involved in projects (A) during multiple years (C). The dataset contains three columns: A, B, C. Example: A B C 1 1 a 1999 2 1 b 1999 3 1 c 1999 4 2 c 2001 5 2 d 2001 6 3 a 2004 7 3 b 2004 I am interested in the

Re: [R] problem with installing packages

2011-02-12 Thread Uwe Ligges
On 11.02.2011 16:14, xin shi wrote: Dear: I am recnetly trying to install some libraries. However, I found this issue for both my laptop and desktop even I uninstall and install it again. I even can not update the R now. I wonder if you have the similar issue. Do you have a) internet co

Re: [R] From SPSS Syntax to R code

2011-02-12 Thread Daróczi Gergely
Hi, instead of sub, use substr in R, also look for 'which' and 'factor' in the manual. E.g.: ?substr ?which > ?factor I hope this could help you to rewrite the SPSS syntax in R. Good luck! Best, Gergely On Sat, Feb 12, 2011 at 2:08 PM, beky wrote: > > There is a code from SPSS Syntax > >

Re: [R] From SPSS Syntax to R code

2011-02-12 Thread Pete Brecknock
You might want to take a look at Bob Muenchen's book "R for SAS and SPSS Users" There is an 80 page preview at .. http://rforsasandspssusers.com/ Additionally, there is lots of documentation for getting started with R on the CRAN website http://cran.r-project.org/ HTH Pete -- Vi

[R] Time unit in ts() and arima() functions

2011-02-12 Thread Jose-Marcio Martins da Cruz
This question is surely trivial, sorry. I'm afraid I'm misunterpreting the information I got with the documentation, and I'm a little bit confused. I'm just an engineer with some little skills in statistics. Well, I have a time series - 600 days long - with some weekly periodicity inside. So

[R] From SPSS Syntax to R code

2011-02-12 Thread beky
There is a code from SPSS Syntax do if sub(ATVK,2,2)="01". comp strata=1. else if sub(ATVK,2,2)>="05" and sub(ATVK,2,2)<="27". comp strata=3. else if sub(ATVK,4,2)>"20" or sub(ATVK,6,2)>"20". comp strata=4. else if sub(ATVK,4,2)>"00". comp strata=2. end if. value labels strata 1 "R 2 "Li" 3 "M"

[R] markov-switching models

2011-02-12 Thread Nanda Mendez
I'm looking for Markov switching models, written in R. Does anyone know about programs? Thanks, Nanda [[alternative HTML version deleted]] __ R-help@r-project.org mailing list https://stat.ethz.ch/mail

Re: [R] Re. When is *interactive* data visualization useful to use?

2011-02-12 Thread Tal Galili
Hello Antony, Thank you very much for your detailed answer! All of your points are valid and interesting to reflect upon. Regarding your note number (6), it's a very good point - I didn't think of it. It might be argued that because interactive data visualization can be faster then analytical prog

Re: [R] Comparison of glm.nb and negbin from the package aod

2011-02-12 Thread Matthieu Lesnoff
Dear Sabine In negbin(aod), the deviance is calculated by: # full model logL.max <- sum(dpois(x = y, lambda = y, log = TRUE)) # fitted model logL <- -res$value dev <- -2 * (logL - logL.max) (the log-Lik contain all the constants) As Ben Bolker said, whatever the formula used for deviance, diff

Re: [R] Package distr and define your own distribution

2011-02-12 Thread Dr. Matthias Kohl
Dear Gabriel, it is possible. You can define a new class or just an object of an already existing class. Did you look at: library(distr) vignette("newDistributions") as well as ?AbscontDistribution ?DiscreteDistribution Please let me know if you have further questions! Best Matthias On 11.

[R] linear models with factors

2011-02-12 Thread ATANU
i am trying to fit a linear model with both continuous covariates and factors. When fitted with the intercept term the first level of the factor is treated by R as intercept and the estimate of the effects of remaining levels(say i th level) are given as true estimate of i th level - estimate o

[R] natural cubic spline and multiple variables

2011-02-12 Thread Vijayakumar Ramachandran
I want to create natural cubic spline on my predictors and fit them to a linear model. The DF and Degree of all the splines are the same. I noticed that I can setup the lm() formula as y~ns(x1, df=5) + ns(x2, df=5). My problem is that I have a huge number of predictors (hundreds). ns however

[R] how to improve the precison of this calculation?

2011-02-12 Thread zhaoxing731
Hello T I want to order some calculation "result", there will be lots of "result" that need to calculate and order PS: the "result" is just a intermediate varible and ordering them is the very aim # problem: # For fixed NT and CT, and some pair (c,n). order the pair by co

Re: [R] Fwd: About classification methods.

2011-02-12 Thread Jaeik Cho
Yes, this point i can understand your suggestion and I should read "HOW TO ASK GOOD QUESTIONS". I'm a just new mailing list, also a R user for researching on graduate school. Any person can make mistake, also it can be effect to other people, however a good person is teaching good way. Anyway, a

Re: [R] Predictions with missing inputs

2011-02-12 Thread Bernardo Rangel Tura
On Fri, 2011-02-11 at 20:51 -0500, Axel Urbiz wrote: > Dear users, > > I'll appreciate your help with this (hopefully) simple problem. > > I have a model object which was fitted to inputs X1, X2, X3. Now, I'd like > to use this object to make predictions on a new data set where only X1 and > X2 a