Re: [R] points marking

2010-06-10 Thread Petr PIKAL
Hi I am not sure if you can do what you want. Segments are not points so your pch option is (I believe) ignored. You could play with lmitre and lend parameters, but it probably would not help much. You cold try to look at ?symbols but you probably need to change source code to suit your needs.

[R] ff package when reading .csv files

2010-06-10 Thread dhanush
Hi My aim is to read a large .csv file into R. I ran the following code and am using R version 10.1 on Windows. >library(ff) > read.csv.ffdf(x=NULL,"file.csv",fileEncoding="",nrows=-1,first.rows=NULL,next.rows=NULL,levels=NULL,appendLevels=TRUE,FUN="read.table",transFUN=NULL,asffdf_args=list(),

Re: [R] points marking

2010-06-10 Thread khush ........
Dear Gregory , Thnaks for your reply and help. I am explaining you my problems again, below is my script for the same . Dom <-c (195,568,559) fkbp <- barplot (Dom, col="black", xlab="", border = NA, space = 7, xlim=c(0,650), ylim =c(0, 87), las = 2, horiz = TRUE) axis (1, at = seq(0,600,10), l

Re: [R] Issues with Bar Graph

2010-06-10 Thread beloitstudent
Thanks Jannis! I feel so dumb! I didn't specify the par(mar) before I wrote the code...thanks for checking me :) beloitstudent On Thu, Jun 10, 2010 at 4:28 AM, jannis-2 [via R] < ml-node+2250158-1003270618-278...@n4.nabble.com > wrote: > > > I am having a few problems with this. 1) My y > >

Re: [R] 45 degree tick marks

2010-06-10 Thread Kathleen Schurr
Thanks for the advice! I'm not sure I fully understand how to get the text() function to rotate the axis, but I'll fiddle and see if I can't get it to work. On Thu, Jun 10, 2010 at 7:50 AM, Marc Schwartz wrote: > On Jun 10, 2010, at 7:18 AM, Jim Lemon wrote: > > > On 06/10/2010 01:44 PM, beloit

Re: [R] setting the current working directory to the location of the source file

2010-06-10 Thread Charles C. Berry
On Fri, 11 Jun 2010, Marcin Gomulka wrote: AFAIK a script run through source() does not have any legit way to learn about it's own location. You mean like 'test.R' being able to figure out that that is what it is called when it is invoked from source()? cat("print(eval(sys.calls()[[1]][[

[R] Misplacement of Greek letter

2010-06-10 Thread beloitstudent
Hello. I am trying to get my axis label to read as follows (The symbol) Delta AUC blah blah... then below it...(some other text) The problem is the Delta symbol shows up beside the "(some other text)" rather than the "AUC". Does any one know how I can get the Delta to remain beside AUC? H

Re: [R] Retrieving the 2 row of "dist" computations

2010-06-10 Thread Jeff08
Hey Jorge, Don't know if you received this but, essentially I found something weird with the outputs. Edit: There is something funky about the code. It definitely returns the right column of the "distance" data, but returns an incorrect row. Code: NCols=250 NRows=829 myMat<-matrix(runif(NCols

Re: [R] Correlation Matrix

2010-06-10 Thread sayan dasgupta
Hi , you can try using cov2cor(vcov(lm(calorie~height))) to get the correlation matrix of estimated coefficients boltonboy999 wrote: > > Hi everyone, > > This is pretty urgent so if anyone can help that would be great. > > I have a table of information. The categories are weight, height

Re: [R] setting the current working directory to the location of the source file

2010-06-10 Thread Mohan L
On Fri, Jun 11, 2010 at 6:03 AM, Marcin Gomulka wrote: > AFAIK a script run through source() does not have any legit way to learn > about it's own location. > > I need this to make sure that the script will find its datafiles after I > move the whole directory. (The datafiles are in the same dire

Re: [R] Retrieving the 2 row of "dist" computations

2010-06-10 Thread Jeff08
Edit: There is something funky about the code. It definitely returns the right column of the "distance" data, but returns an incorrect row. Code: NCols=250 NRows=829 myMat<-matrix(runif(NCols*NRows), ncol=NCols) d<-dist(myMat) e<-sort.list(d) e<-e[1:5] ##Retrieve minimum 5 distances k <-

Re: [R] R: selecting and excluding files through a pattern

2010-06-10 Thread Henrique Dallazuanna
patt <- ".*Prostate.*cvs.*" dir(pattern = patt) On Thu, Jun 10, 2010 at 7:07 PM, wrote: > Actually this pattern will select the files whose name contains "csv". > Whereas I'd like to exscude them. > Maura > > -Messaggio originale- > Da: Jorge Ivan Velez [mailto:jorgeivanve...@gmail.com]

[R] setting the current working directory to the location of the source file

2010-06-10 Thread Marcin Gomulka
AFAIK a script run through source() does not have any legit way to learn about it's own location. I need this to make sure that the script will find its datafiles after I move the whole directory. (The datafiles are in the same directory.) Here is a hack I invented to work around it: print(getwd

Re: [R] Can RMySQL be used for a paramterized query?

2010-06-10 Thread Paul Gilbert
Ted I'm not sure I fully understand the question, but you may want to consider creating a temporary table with a join, which you can do with a query from your R session, and then query that table to bring the data into R. Roughly, the logic is to leave the data in the db if you are not doing an

[R] R: selecting and excluding files through a pattern

2010-06-10 Thread mauede
Actually this pattern will select the files whose name contains "csv". Whereas I'd like to exscude them. Maura -Messaggio originale- Da: Jorge Ivan Velez [mailto:jorgeivanve...@gmail.com] Inviato: gio 10/06/2010 17.30 A: mau...@alice.it Cc: r-h...@stat.math.ethz.ch Oggetto: Re: [R] select

Re: [R] Package not on CRAN mirrow - what now?

2010-06-10 Thread Cedrick W. Johnson
Just as a side note, perhaps this will help someone else who comes across this topic of packages no longer being on CRAN and built before 2.11.0 in that case they can't install the package... I use package 'sma' which was last maintained sometime in the mid 2000's and obviously it's not on CRA

Re: [R] use of aggregate

2010-06-10 Thread Erik Iverson
Philip wrote: Dear list, Is it possible to replace the median in the following code so as to calculate 5 and 95% tiles? with( raunheim, aggregate(no, by = list(wd,hr), FUN = "median", na.rm=TRUE) ) Please give reproducible examples that we can run by cutting and pasting! You should just g

Re: [R] Row binding

2010-06-10 Thread Liviu Andronic
On Thu, Jun 10, 2010 at 10:37 AM, Patrick Burns wrote: > See 'The R Inferno' Circle 2 for why > this takes so long, and what to do > about it. > Also check this Rnews issue [1], page 46, on how to make loops faster. Liviu [1] http://www.r-project.org/doc/Rnews/Rnews_2008-1.pdf __

Re: [R] Order labels in qplot() - ggplot2 {help}

2010-06-10 Thread baptiste auguie
Hi, You could reorder the factor levels before plotting, x$n = factor(x$n, levels=c("va","vp", letters[1:3])) last_plot() %+% x or you could avoid using factors in the first place, x <- data.frame(cbind(n,p,pm,pn), stringsAsFactors=FALSE) last_plot() %+% x HTH, baptiste On Thu, Jun 10, 20

Re: [R] Can RMySQL be used for a paramterized query?

2010-06-10 Thread Ted Byers
Thanks, Actually, thanks to the info Henrique sent, I have made decent progress. In actuality, I could have just submitted a SELECT * on the second table, which would give me everything, just like Henrique's suggestion, and yours, would give me. The problem is that that table is HUGE (I don't wa

Re: [R] R: selecting and excluding files through a pattern

2010-06-10 Thread Phil Spector
Here's one possibility: allfiles = list.files() csvfiles = list.files(pattern='csv') allfiles[!allfiles %in% csvfiles] - Phil Spector Statistical Computing Facility Departmen

Re: [R] calibration and validation for svycoxph

2010-06-10 Thread R user
Hi Dr. Lumley, Sorry about the succession of the 2 messages. It wasn't intended. This is my first post to the forum and I first signed up to Nabble and submitted the post and later got the message from Nabble that the post has not been accepted by the R forum and that I need separate subscription

Re: [R] Date conversion

2010-06-10 Thread Joshua Wiley
Hello Felipe, Is this what you want? format(as.Date("3/10/10", format="%m/%d/%y"), "%B %d, %Y") Josh On Thu, Jun 10, 2010 at 8:29 AM, Felipe Carrillo wrote: > Hi: > Can't find a way to convert from shortDate to LongDate format. I got: > 3/10/10 that I want to convert to March 10, 2010. I am us

Re: [R] Order labels in qplot() - ggplot2 {help}

2010-06-10 Thread William Dunlap
> -Original Message- > From: r-help-boun...@r-project.org > [mailto:r-help-boun...@r-project.org] On Behalf Of baptiste auguie > Sent: Thursday, June 10, 2010 11:50 AM > To: Kim Jung Hwa > Cc: r-help@r-project.org; ggplot2 > Subject: Re: [R] Order labels in qplot() - ggplot2 {help} > > Hi

[R] use of aggregate

2010-06-10 Thread Philip
Dear list, Is it possible to replace the median in the following code so as to calculate 5 and 95% tiles? with( raunheim, aggregate(no, by = list(wd,hr), FUN = "median", na.rm=TRUE) ) Regards, Philip Sinclair __ R-help@r-project.org mailing list ht

Re: [R] bug? in stats::cor for use=complete.obs with NAs

2010-06-10 Thread Peter Ehlers
I don't think that this would be considered a bug. The reason for the discrepancy between use="complete.obs" and use="pairwise.complete.obs" for the case of the Spearman correlation of two vectors x, y is this: "pairwise" does complete.cases(x,y) and then ranks; this is also what's done in cor.te

[R] Order labels in qplot() - ggplot2 {help}

2010-06-10 Thread Kim Jung Hwa
Hello, I want to arrage the label according to my preference eg.. (va, vp, a, b, c) but don't know how to supress default ordering. Any suggestions? Please try the code below: n <- c("va", "vp", "a", "b", "c") p <- c(2, 2,1, 3,5) pm<- c(3,4,2,5,4) pn <- c(1,1,1,2,3) x<-data.frame(cbind(n,p,pm,pn

Re: [R] nls model fitting errors

2010-06-10 Thread Peter Ehlers
On 2010-06-10 8:27, Graves, Gregory wrote: What am I failing to understand here? Several things; see below. The script below works fine if the dataset being used is DNase1<- DNase[ DNase$Run == 1, ] per the example given in help(nlrob). Obviously, I am trying to understand how to use nl

Re: [R] levelplot and contour lines

2010-06-10 Thread Deepayan Sarkar
On Thu, Jun 10, 2010 at 9:30 PM, wrote: > Hello list, > > Is there a way to add contour lines to a levelplot at different breakpoints > than are used for the colors? For example: > > > library(lattice) > > # colors good but too many contours > levelplot(volcano, at=94:195, contour=TRUE) > > # I t

Re: [R] points marking

2010-06-10 Thread Greg Snow
Your question is not really clear, do either of these examples do what you want? with(anscombe, plot(x1, y2, ylim=range(y2,y3)) ) with(anscombe, points(x1, y3, col='blue', pch=2) ) with(anscombe, segments(x1, y2, x1, y3, col=ifelse( y2>y3, 'green','red') ) ) with(anscombe, plot(x1, y2, ylim=

Re: [R] adding column of ordered numbers to matrix

2010-06-10 Thread Greg Snow
> newmat <- cbind( oldmat, order=seq(nrow(oldmat)) ) See ?seq and/or ?rev for descending. -- Gregory (Greg) L. Snow Ph.D. Statistical Data Center Intermountain Healthcare greg.s...@imail.org 801.408.8111 > -Original Message- > From: r-help-boun...@r-project.org [mailto:r-help-boun...@r

Re: [R] Latex: Date Format conversion

2010-06-10 Thread Marc Schwartz
On Jun 10, 2010, at 12:19 PM, Marc Schwartz wrote: > Felipe, > > I would not do the processing in TeX, but do it in R and then pass the > results to the \Sexpr{}'s. > > If I am correctly understanding the process flow, put the following R code > chunk before the point where you need to output

Re: [R] Latex: Date Format conversion

2010-06-10 Thread Felipe Carrillo
Marc: Thanks for reinforcing that, I was just trying to go that route. It seems to be  simpler to import the dataset and just grab the first and last date from it and then format it. Thanks again.   Felipe D. Carrillo Supervisory Fishery Biologist Department of the Interior US Fish & Wildlife Serv

Re: [R] Latex: Date Format conversion

2010-06-10 Thread Marc Schwartz
Felipe, I would not do the processing in TeX, but do it in R and then pass the results to the \Sexpr{}'s. If I am correctly understanding the process flow, put the following R code chunk before the point where you need to output the formatted dates: <> START <- format(as.Date(report[1, 1],

Re: [R] Finding distance matrix for categorical data

2010-06-10 Thread Joris Meys
correction. See ?daisy in the PACKAGE cluster. *slaps head* cheers Joris On Thu, Jun 10, 2010 at 7:02 PM, Joris Meys wrote: > see ?daisy in the library cluster > > Cheers > Joris > > On Thu, Jun 10, 2010 at 6:12 PM, kapil mahant wrote: >> All, >> >> How can we find a distance matrix for categori

Re: [R] Finding distance matrix for categorical data

2010-06-10 Thread Joris Meys
see ?daisy in the library cluster Cheers Joris On Thu, Jun 10, 2010 at 6:12 PM, kapil mahant wrote: > All, > > How can we find a distance matrix for categorical data > > ie.  given a csv below > >                   var1         var2    var3    var4 > element1-1   yes            x         a      

Re: [R] do faster ANOVAS

2010-06-10 Thread Douglas Bates
The lm and aov functions can take a matrix response allowing you to fit all of the responses for a single attribute simultaneously. On Thu, Jun 10, 2010 at 8:47 AM, melissa wrote: > Dear all R users, > I want to realize 800 000 ANOVAS and to store Sum of Squares of the effects. > Here is an ext

Re: [R] Latex: Date Format conversion

2010-06-10 Thread Felipe Carrillo
 Marc: My report is done every two weeks and is created automatically. I click a command button on an Excel form and it runs a .rnw script in R creating a latex dynamic report. Excel sends 15 days of data to R, eg: 6/1/10 to 6/15/10. Right above my report I usually write the range of the report m

Re: [R] coxph and completely missing strata/subsetting

2010-06-10 Thread Erik Iverson
I'm doing some coxph() analyses with a large and complex dataset. The data was collected in different centers, so I am using strata(centers) to stratify the analysis. My main issue is, not all centers collected all the variables, so for a model such as: coxph(Surv(days, cancer) ~ varA + sex +

[R] coxph and completely missing strata/subsetting

2010-06-10 Thread Federico Calboli
Hi everyone, I'm doing some coxph() analyses with a large and complex dataset. The data was collected in different centers, so I am using strata(centers) to stratify the analysis. My main issue is, not all centers collected all the variables, so for a model such as: coxph(Surv(days, cancer)

Re: [R] calibration and validation for svycoxph

2010-06-10 Thread Thomas Lumley
You don't say what you mean by validation and calibration of the model (these terms have multiple meanings) but if you mean looking at how good the prediction is, all the raw materials are available through svykm() and the predict() method for svycoxph(). There aren't any predefined function

[R] Finding distance matrix for categorical data

2010-06-10 Thread kapil mahant
All, How can we find a distance matrix for categorical data ie. given a csv below var1 var2var3var4 element1-1 yesx a k element1-2 no y b l element1-3 maybe y c m how can i

[R] HOW to install RSQLite database

2010-06-10 Thread vijaysheegi
Please let me know where i have to type below thing to RSQLite database get installed.Please let me know the solution.Thanks in advance RSQLite -- Embedding the SQLite engine in R (The RSQLite package includes a recent copy of the SQLite distribution from http://www.sqlite.org.) Installat

[R] do faster ANOVAS

2010-06-10 Thread melissa
Dear all R users, I want to realize 800 000 ANOVAS and to store Sum of Squares of the effects. Here is an extract of my table data Product attribute subject rep t1 t2 t3 … t101 P1 A1 S1 R1 1 0 0 … 1 I want to realize 1 ANOVA per timepoint and per attribute, there are 101 timepoints and 8 attr

Re: [R] [R[ dates on zoo objects

2010-06-10 Thread Gabor Grothendieck
Its best to use dput when displaying your data in r-help as in dput(z) or dput(head(z)) if large. Try this: > library(zoo) > # test data > z <- zoo(1:2, factor(c("04/16/09","04/17/09"))) > > # 1 > aggregate(z, function(x) as.Date(x, "%m/%d/%y")) 2009-04-16 2009-04-17 1 2 > > # o

Re: [R] lattice: how to remove ticks from splom()?

2010-06-10 Thread Peter Ehlers
It gets my vote. -Peter Ehlers On 2010-06-10 9:30, Bert Gunter wrote: Is the quote below from Deepayan a possible Fortune? It put a sardonic smile on my lips. Bert Gunter Genentech Nonclinical Biostatistics ... You should really get into the habit of reading documentation; it can often tu

[R] Odp: adding column of ordered numbers to matrix

2010-06-10 Thread Petr PIKAL
Hi r-help-boun...@r-project.org napsal dne 10.06.2010 15:56:06: > Hello everyone, > > I have a matrix of over 4 line and about 30 columns. Matrix or data.frame? > > For my analysis I would like to add another column with ascending numbers > (column header should be "order", and than 1,2,

[R] levelplot and contour lines

2010-06-10 Thread rchandler
Hello list, Is there a way to add contour lines to a levelplot at different breakpoints than are used for the colors? For example: library(lattice) # colors good but too many contours levelplot(volcano, at=94:195, contour=TRUE) # I thought something like this might work levelplot(volcano,

[R] Problems with BRugs

2010-06-10 Thread R Heberto Ghezzo, Dr
Hello, I am trying to run some examples from the book of P.Congdon. If I run the following script # Program 7.2 Bayesian Statistical Modelling - Peter Congdon # library(R2WinBUGS) setwd("c:/temp/R") mo <- function() { rho ~ dbeta(1,1) th ~ dgamma(0.001,0.001) Y[1] ~ dpois(th) for (t in 2:

Re: [R] Latex: Date Format conversion

2010-06-10 Thread Marc Schwartz
On Jun 10, 2010, at 10:21 AM, Felipe Carrillo wrote: > Hi: > Can't find a way to convert from shortDate to LongDate format. I got: > 3/10/10 that I want to convert to March 10, 2010. I am using: > > \documentclass[11pt]{article} > \usepackage{longtable,verbatim} > \usepackage{ctable} > \usepackag

Re: [R] selecting and excluding files through a pattern

2010-06-10 Thread Jorge Ivan Velez
Hi Maura, Try list.files(pattern = 'csv') HTH, Jorge On Thu, Jun 10, 2010 at 11:24 AM, <> wrote: > I have the following files list: > > > list.files() > [1] "Prostate-Cancer_cvs_Dir" > [2] "Prostate_Cancer-miRNAs&Genes.Pathway.xml" > [3] "Prostate_Cancer_Pathways-miRNAs-GeneTargets-Dir" >

Re: [R] lattice: how to remove ticks from splom()?

2010-06-10 Thread Bert Gunter
Is the quote below from Deepayan a possible Fortune? It put a sardonic smile on my lips. Bert Gunter Genentech Nonclinical Biostatistics ... You should really get into the habit of reading documentation; it can often turn out to be very useful. -Deepayan Sarkar _

[R] Date conversion

2010-06-10 Thread Felipe Carrillo
Hi: Can't find a way to convert from shortDate to LongDate format. I got: 3/10/10 that I want to convert to March 10, 2010. I am using: \documentclass[11pt]{article} \usepackage{longtable,verbatim} \usepackage{ctable} \usepackage{datetime} \title{my title} \begin{document}   % Convert date \dd

[R] selecting and excluding files through a pattern

2010-06-10 Thread mauede
I have the following files list: > list.files() [1] "Prostate-Cancer_cvs_Dir" [2] "Prostate_Cancer-miRNAs&Genes.Pathway.xml" [3] "Prostate_Cancer_Pathways-miRNAs-GeneTargets-Dir" [4] "Prostate_Cancer_Pathways-miRNAs-GeneTargets-Dir.zip" [5] "Prostate

[R] Latex: Date Format conversion

2010-06-10 Thread Felipe Carrillo
Hi: Can't find a way to convert from shortDate to LongDate format. I got: 3/10/10 that I want to convert to March 10, 2010. I am using: \documentclass[11pt]{article} \usepackage{longtable,verbatim} \usepackage{ctable} \usepackage{datetime} \title{my title} \begin{document}   % Convert date \dd

Re: [R] glm poisson function

2010-06-10 Thread Robert A LaBudde
> prop.test(c(271,433),c(6164113,5572041)) 2-sample test for equality of proportions with continuity correction data: c(271, 433) out of c(6164113, 5572041) X-squared = 54.999, df = 1, p-value = 1.206e-13 alternative hypothesis: two.sided 95 percent confidence interval: -4.291428e-05 -

Re: [R] drawing curve

2010-06-10 Thread baptiste auguie
The OP asked for a smooth curve, foo = splinefun(x,y) curve(foo, min(x), max(x)) # points(x,y) I'm sure a R wizard could make it a one-liner. HTH, baptiste On 10 June 2010 16:48, Mario Valle wrote: > x<-c(1:6) > y<-c(.01,.09,.08,.03,.001,.02) > plot(x,y, type='l') > > Please try ?plot before

Re: [R] drawing curve

2010-06-10 Thread Mario Valle
x<-c(1:6) y<-c(.01,.09,.08,.03,.001,.02) plot(x,y, type='l') Please try ?plot before asking to the list. Ciao! mario On 10-Jun-10 12:11, suman dhara wrote: Sir, I have a problem regarding drawing curve.I pose the problem as follows: suppose I have two vectors: x<-c(1:6) y<-c(.0

Re: [R] [R[ dates on zoo objects

2010-06-10 Thread Gabor Grothendieck
or > or # 3 > aggregate(z, as.Date(time(z), "%m/%d/%y")) 2009-04-16 2009-04-17 1 2 On Thu, Jun 10, 2010 at 9:58 AM, Gabor Grothendieck wrote: > Its best to use dput when displaying your data in r-help as in dput(z) > or dput(head(z)) if large. > > Try this: > >> library(zoo) >

Re: [R] Patch for legend.position={left,top,bottom} in ggplot2

2010-06-10 Thread Felipe Carrillo
Hi: I downloaded the patch, how do I incorporate it to my current version of ggplot2?   Felipe D. Carrillo Supervisory Fishery Biologist Department of the Interior US Fish & Wildlife Service California, USA - Original Message > From: Hadley Wickham > To: Karsten Loesing > Cc: "r-help

[R] nls model fitting errors

2010-06-10 Thread Graves, Gregory
What am I failing to understand here? The script below works fine if the dataset being used is DNase1 <- DNase[ DNase$Run == 1, ] per the example given in help(nlrob). Obviously, I am trying to understand how to use nls and nlrob to fit curves to data using R. #package=DAAG attac

[R] adding column of ordered numbers to matrix

2010-06-10 Thread Assa Yeroslaviz
Hello everyone, I have a matrix of over 4 line and about 30 columns. For my analysis I would like to add another column with ascending numbers (column header should be "order", and than 1,2,3,4 the end of the matrix). During my analysis I reorder them ( due to merge commands by a differen

Re: [R] Wrong symbol rendering in plots (Ubuntu)

2010-06-10 Thread Eduardo J. Chica
Hello, please excuse me if this is a repost, I think I got confused about how to reply. Anyway, I posted the message below about a day and a half ago through Nabble but have not been cleared until today. Here it goes again. Please bear with me I will get better with time. Start of message s

[R] points marking

2010-06-10 Thread khush ........
Hi, How to mark points on x axis of a graph keeping x axis as constant and changing y from y1 to y2 respectively. I want to highlight the area from y1 to y2. Any suggestions Thank you Jeet [[alternative HTML version deleted]] __ R-help@r-pro

Re: [R] Capturing errors [not buffered output] from Rterm

2010-06-10 Thread Keith Jewell
Thanks to both Prof. Ripley and Duncan Murdoch for correctly diagnosing my problem as failure to redirect stderr (nothing to do with buffering). Both pointed me to R CMD BATCH which would have done the job, if I hadn't wanted to run interactively - in my real task (not the example below) I had

[R] [R[ dates on zoo objects

2010-06-10 Thread Erin Hodgess
Dear R People: I have a zoo object with its date index as a factor. > xAle1.zoo$index Error in xAle1.zoo$index : $ operator is invalid for atomic vectors > str(xAle1.zoo) Class 'zoo' atomic [1:32] 1253 1316 1038 1157 1710 1489 1159 1142 945 1245 ... ..- attr(*, "index")= Factor w/ 32 levels "0

Re: [R] Sweave cutting new lines

2010-06-10 Thread ONKELINX, Thierry
Hi Florian, Have you tried to replace each '\n' with '\r\n'. That did the trick for me. HTH, Thierry ir. Thierry Onkelinx Instituut voor natuur- en bosonderzoek team Biometrie & Kwaliteitszorg Gaverstraat 4 9500 Geraa

Re: [R] drawing curve

2010-06-10 Thread ONKELINX, Thierry
Have a look at the ggplot2 package x <- 1:6 y <- c(.01,.09,.08,.03,.001,.02) dataset <- data.frame(x, y) library(ggplot2) ggplot(data = dataset, aes(x = x , y = y)) + geom_smooth() ggplot(data = dataset, aes(x = x , y = y)) + geom_smooth() + geom_point() ggplot(data = dataset, aes(x = x , y = y))

Re: [R] partial matches across rows not columns

2010-06-10 Thread RCulloch
Hi Jim and Hi Jannis, Thanks very much to both of you for your help! Both methods work perfectly! Always good to know that there is more than one way to skin a cat when it comes to R! I will just need to get a grip on the regular expressions, it would seem. Many thanks again for you r help, muc

[R] drawing curve

2010-06-10 Thread suman dhara
Sir, I have a problem regarding drawing curve.I pose the problem as follows: suppose I have two vectors: x<-c(1:6) y<-c(.01,.09,.08,.03,.001,.02) plot(x,y) It gives me the plotted points.But I want to draw a smooth curve passing througt these points. How can I do this? Thanks & Regards, Suman D

Re: [R] Intra-Class correlation psych package missing data

2010-06-10 Thread RCulloch
Hi Bill, No worries, always a million things to do! Thanks very much for the reply, that has cleared that up and I'll look out for the update next week. Many thanks, Ross -- View this message in context: http://r.789695.n4.nabble.com/Intra-Class-correlation-psych-package-missing-data-tp17739

[R] glm poisson function

2010-06-10 Thread Phender79
Hi, I'm totally new to R so I apologise for the basic request. I am looking at the incidence of a disease over two time periods 1990-1995 and 2003-2008. I have counts for each year, subdivided into three disease categories and by males/females. I understand that I need to analyse the data using p

[R] Sweave cutting new lines

2010-06-10 Thread Florian Burkart
Hi, I have trouble with Sweave (I think) cutting of my newlines. As stated in the help of Sweave, I generate tex code straight from R for dynamically computed reports. If I do this in R: for (i in 0:4) {cat("\n",i,"\n")};cat("\n 3") 0 1 2 3 4 3 The output looks correct. However

Re: [R] counting Na/not NA by groups by column

2010-06-10 Thread Henrique Dallazuanna
Try this also: rowsum(`mode<-`(!is.na(m[,-(1:2)]), 'numeric'), m[,2]) On Wed, Jun 9, 2010 at 10:03 PM, steven mosher wrote: > # create a matrix with some random NAs in it > > m<-matrix(NA,nrow=15,ncol=14) > > m[,3:14]<-52 > > m[13,9]<-NA > > m[4:7,8]<-NA > > m[1:2,5]<-NA > > m[,2]<-rep(1800:1804

Re: [R] Patch for legend.position={left,top,bottom} in ggplot2

2010-06-10 Thread Hadley Wickham
Cool! Thanks Karsten. If you send me a github pull request I'll incorporate it. Hadley On Thursday, June 10, 2010, Karsten Loesing wrote: > Hi everyone, > > here's the same patch as a new branch on GitHub. > >  http://github.com/kloesing/ggplot2/commit/a25e4fbfa4017ed1 > > Best, > --Karsten > >

Re: [R] 45 degree tick marks

2010-06-10 Thread Marc Schwartz
On Jun 10, 2010, at 7:18 AM, Jim Lemon wrote: > On 06/10/2010 01:44 PM, beloitstudent wrote: >> >> Hello experts. >> >> Sorry this is such a novice question, but I have been trying, fruitlessly to >> get my x axis to angle at 45 degrees. I have tried the text() call with srt >> and adj and just

Re: [R] Can RMySQL be used for a paramterized query?

2010-06-10 Thread Henrique Dallazuanna
I think you can do this: ids <- dbGetQuery(conn, "SELECT id FROM my_table") other_table <- dbGetQuery(conn, sprintf("SELECT * FROM my_other_table WHERE t1_id in (%s)", paste(ids, collapse = ","))) On Wed, Jun 9, 2010 at 11:24 PM, Ted Byers wrote: > I have not found anything about this except th

Re: [R] ANOVA of a sort

2010-06-10 Thread Joris Meys
This is a typical problem we give as a homework to students. If you can't solve this yourself, you really need to brush up your statistical knowledge or look for a statistician close by to cooperate with. Take a look at these : http://www.ats.ucla.edu/stat/r/seminars/repeated_measures/repeated_me

Re: [R] Capturing buffered output from Rterm

2010-06-10 Thread Prof Brian Ripley
On Thu, 10 Jun 2010, Keith Jewell wrote: In MS Windows I a) invoke Rterm from a batch file (test.bat) b) to execute commands from a script (m:\test.rsc) c) capturing output in a log file (m:\test.log) BUT if the script results in an error the error message is NOT written to the log file, lea

Re: [R] Power calculation

2010-06-10 Thread Chuck Cleland
On 6/10/2010 8:26 AM, Samuel Okoye wrote: > Hello, > > Is there any R function which does power calculation for unbalanced groups > (n1 neq n2)? Since power.t.test has n > > Number of observations (per group). > > Many thanks, > Samuel See pwr.t2n.test() in the pwr package. http://finzi.psy

Re: [R] comparing two regression models with different dependent variable

2010-06-10 Thread Joris Meys
On Thu, Jun 10, 2010 at 2:04 PM, Gabor Grothendieck wrote: > On Thu, Jun 10, 2010 at 5:33 AM, Joris Meys wrote: >> This is only valid in case your X matrix is exactly the same, thus > > The poster did not give a full explanation so the best that can be > done without getting into an extended ques

[R] Power calculation

2010-06-10 Thread Samuel Okoye
Hello, Is there any R function which does power calculation for unbalanced groups (n1 neq n2)? Since power.t.test has n Number of observations (per group). Many thanks, Samuel [[alternative HTML version deleted]] __ R-help@r-project

Re: [R] 45 degree tick marks

2010-06-10 Thread Jim Lemon
On 06/10/2010 01:44 PM, beloitstudent wrote: Hello experts. Sorry this is such a novice question, but I have been trying, fruitlessly to get my x axis to angle at 45 degrees. I have tried the text() call with srt and adj and just cannot get my labels to tilt. Does anyone have any other sugges

Re: [R] comparing two regression models with different dependent variable

2010-06-10 Thread Gabor Grothendieck
On Thu, Jun 10, 2010 at 5:33 AM, Joris Meys wrote: > This is only valid in case your X matrix is exactly the same, thus The poster did not give a full explanation so the best that can be done without getting into an extended question and answer is to make some assumptions, show the result and hop

Re: [R] Taylor Diagram

2010-06-10 Thread Jim Lemon
On 06/09/2010 10:14 PM, Mustafa Tufan Turp wrote: Dear R users, I need to learn plotting Taylor diagram. I dowloaded the "plotrix" that includes "taylor.diagram" but I dont know how to study with real datasets. Anyone help me? Hi Tufan, Try this: www-pcmdi.llnl.gov/about/staff/Taylor/CV/Tayl

Re: [R] mgcv

2010-06-10 Thread Gavin Simpson
On Mon, 2010-06-07 at 10:25 -0700, Dipa Hari wrote: > > Hello Sir, > I am using mgcv package for my data. > My model isy~x1+f(x2),I want to find out the function f(x2). > Following is the code. > > sm1=gam(y~x1+s(x2),family=binomial, f) > summary(sm1) > plot(sm1,residuals=TRUE, xlab="AGE",pch

Re: [R] comparing two regression models with different dependent variable

2010-06-10 Thread Or Duek
Thank you very much for your answers. The setup is not as you described - all participants have 4 stimuli - 2 for punishment and 2 for reward. all participants see them in mixed blocks. I try to measure the correlation between some personality traits (measured with personality questionnaires) and t

Re: [R] To give column names of a data-frame

2010-06-10 Thread Joris Meys
First of all, read the help file ?data.frame. What you do is adding a variable row.names, column.names and title to your dataframe. What you want to do is set the rownames and colnames. > results <- data.frame(matrix(c(1,2,3,4),nrow=2,ncol=2)) > rownames(results) <- c("a","b") > colnames(results

Re: [R] back transforming arcsine transformations in metafor

2010-06-10 Thread Viechtbauer Wolfgang (STAT)
Dear Chris, Just define the following function: transf.iasin <- function(x) { z <- sin(x)^2 return(z) } to give the inverse of the arcsine transformation. Then specify this function under the atransf argument. I will add the transf.iasin() function to the package. Best, -- Wolfgang Vie

Re: [R] comparing two regression models with different dependent variable

2010-06-10 Thread Joris Meys
As I explained, you cannot just test two models with different dependent variables. You can model the difference you calculated, if you think you can give a sensible interpretation to it. But be aware of the fact that your model will tell you something about the relation between your predictors and

Re: [R] creating a new variable, conditional on the value of an existing variable, selected conditionally

2010-06-10 Thread Dennis Murphy
Hi: I had Harold's idea (matrix indexing), but I was curious to see which of these ran fastest. I simulated 1000 rows and three columns of binary data, along with a fourth column that sampled the values 1:3 1000 times. Here are the timings: > f <- as.data.frame(matrix(rbinom(3000, 1, 0.4), nrow =

Re: [R] Capturing buffered output from Rterm

2010-06-10 Thread Duncan Murdoch
Keith Jewell wrote: In MS Windows I a) invoke Rterm from a batch file (test.bat) b) to execute commands from a script (m:\test.rsc) c) capturing output in a log file (m:\test.log) BUT if the script results in an error the error message is NOT written to the log file, leaving me problems wh

Re: [R] Package not on CRAN mirrow - what now?

2010-06-10 Thread Duncan Murdoch
markw...@afrihost.co.za wrote: Package arulesSequences isn't on CRAN for automatic package install. I downloaded a *.tar.qz version because no *.zip for Windows offered. Why is this? I expanded *.tar.qz in ~R/R-2.11.0/library/arulesSequences I then assumed that R would list it in the packages lis

Re: [R] Package not on CRAN mirrow - what now?

2010-06-10 Thread Uwe Ligges
On 10.06.2010 12:28, markw...@afrihost.co.za wrote: Package arulesSequences isn't on CRAN for automatic package install. I downloaded a *.tar.qz version because no *.zip for Windows offered. Why is this? Because the DESCRIPTION file and hence the web page of the package at http://cran.r-proje

[R] Cforest and Random Forest memory use

2010-06-10 Thread Matthew OKane
Hi all, I'm having great trouble working with the Cforest (from the party package) and Random forest functions. Large data set seem to create very large model objects which means I cannot work with the number of observations I need to, despite running on a large 8GB 64-bit box. I would like the

[R] Capturing buffered output from Rterm

2010-06-10 Thread Keith Jewell
In MS Windows I a) invoke Rterm from a batch file (test.bat) b) to execute commands from a script (m:\test.rsc) c) capturing output in a log file (m:\test.log) BUT if the script results in an error the error message is NOT written to the log file, leaving me problems when the error is from a

Re: [R] How to add a new plot in the same graph using add=T at the command plot?

2010-06-10 Thread Uwe Ligges
On 10.06.2010 11:15, Petr PIKAL wrote: Hi Uwe Ligges napsal dne 10.06.2010 10:37:05: On 10.06.2010 10:19, Petr PIKAL wrote: Hi Peter Ehlers napsal dne 09.06.2010 19:05:24: Soapbox: Well, if you're just starting out with R it would be a VERY good idea to learn right away that T is no

[R] Package not on CRAN mirrow - what now?

2010-06-10 Thread markwebb
Package arulesSequences isn't on CRAN for automatic package install. I downloaded a *.tar.qz version because no *.zip for Windows offered. Why is this? I expanded *.tar.qz in ~R/R-2.11.0/library/arulesSequences I then assumed that R would list it in the packages list but it doesn't. What am I doing

Re: [R] Re :help to aggregate data

2010-06-10 Thread eugen pircalabelu
Hello, Or ?aggregate stdate<-c(rep(1,5),rep(2,5)) domaindesc<-c(1,1,1,2,2,2,3,3,3,3) logins<-sample(1:10, 10) dummy.data<-as.data.frame(cbind(stdate,domaindesc,logins)) aggregate(dummy.data[,3], by=list(dummy.data[,1],dummy.data[,2]), FUN=sum) # same result as tapply, but with only levels that

Re: [R] comparing two regression models with different dependent variable

2010-06-10 Thread Or Duek
I'll try to add some more information regarding my experiment - maybe that would help clear things out. Instead of actually measuring the learning curve (i.e. number of correct responses per block) I created a variable that substract the number of correct answers from the last block with that of th

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