[R] R-beta: adjusting y-axis scale with multiple lines in plot

2009-10-06 Thread Marko Lõoke
__ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.

[R] RExcel

2009-10-06 Thread Benjamin Ward
Hello- I am a Graduate Assistant for an instructor who has written programs for statistics calculations such as binomial distributions and regressions. The programs had worked with no problem in Excel 2003. Now we are trying to use it with Excel 2007, and we are having some trouble. I have downl

Re: [R] gnu ODBC driver for ORACLE in WinXP platform?

2009-10-06 Thread Prof Brian Ripley
On Tue, 6 Oct 2009, Kenneth Roy Cabrera Torres wrote: Hi R users and Dr. Uwe Ligges: I read on the ROracle pre-compiled binary README file that: Hmm, that is from the CRAN README on Windows pre-compiled binary packages: there is no 'ROracle pre-compiled binary' (for Windows or Mac OS X) on

Re: [R] power?

2009-10-06 Thread Simon Blomberg
The short answer is Yes. If you reject the null hypothesis based on that p-value, then by definition you had enough power to do that. This is because there is a precise inverse relationship between the p-value and the "observed" power, once you fix the effect size and the sample size. In other word

[R] power?

2009-10-06 Thread SNN
Hi, I have used multiple linear regression on a data set and one if the regressor was significant with a p-value =0.01 I need to calculate the power for a multiple linear regression. i.e. do I have enough power to believe the above p-value? -- View this message in context: http://www.nabb

[R] rpois formula

2009-10-06 Thread nedmt60
Hi all, It's been a while since i've used R and I can't remember how to do the following: i have a = rpois (10, x) b = rpois (10, y) what is the code to show that a>b, b>a and a=b to show just the number of occurances? at the moment when I type a>b I get a nice long list of true or fal

[R] R, Coda, and OpenBUGS

2009-10-06 Thread Bill Halteman
Hi All, I am trying to figure out how to use R-Coda with the output from OpenBugs. I have installed and loaded the packages BRugs and R2WinBUGS. I have successfully run a simple Bayes model in WinBUGS using R2WinBUGS' "bugs" and have used "read.bugs" to build the coda object. I can succes

Re: [R] text on a plot

2009-10-06 Thread David Winsemius
On Oct 6, 2009, at 11:42 PM, Ning Ma wrote: Hi, How can I put text in a figure which is not parallel to the axes,such as along the line x=2y. It seems that the function 'text' does not have such parameters. What about srt? plot(1,1) text(0.8,0.8, "text test", srt=45) thanks in advan

Re: [R] text on a plot

2009-10-06 Thread David Winsemius
I think if you look in the plotrix package you may find what you are looking for. If I remember it is in one of the vignettes or demos. Seems there might have been a Paul Murrell article in R-News that had an illustration of doing that as well. On Oct 6, 2009, at 11:42 PM, Ning Ma wrote:

[R] text on a plot

2009-10-06 Thread Ning Ma
Hi, How can I put text in a figure which is not parallel to the axes,such as along the line x=2y. It seems that the function 'text' does not have such parameters. thanks in advance Ma __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/l

Re: [R] rpois formula

2009-10-06 Thread David Winsemius
Or: a = rpois (10, 0.1) b = rpois (10, 0.15) table(a>b, a==b, b>a) And if you look at that output a bit: table(ab, b>a and a=b . # 79049 12712 8239 .. since FALSE < TRUE -- On Oct 6, 2009, at 9:49 PM, Ian Fiske wrote: try sum(a > b) sum(b > a) sum(a == b) Ian nedmt60 wrote:

Re: [R] rpois formula

2009-10-06 Thread Ian Fiske
try sum(a > b) sum(b > a) sum(a == b) Ian nedmt60 wrote: > > i have > > a = rpois (10, x) > b = rpois (10, y) > > what is the code to show that a>b, b>a and a=b to show just the number of > occurances? > at the moment when I type a>b I get a nice long list of true or false. > --

Re: [R] Vim-R-plugin (new version)

2009-10-06 Thread Andrew Choens
> Dear R users, > > The author of Tinn-R (Jose Claudio Faria) now is co-author of > Vim-R-plugin2, a plugin that makes it possible to send commands > from the Vim text editor to R. We added many new key bindings, > restructured the menu and created new Tool Bar buttons. The new > version is availab

Re: [R] Fwd: Long for Loop- calling C from R - Parallel Computing

2009-10-06 Thread Antonio Paredes
I should had put it as a question. On Tue, Oct 6, 2009 at 2:06 PM, Bert Gunter wrote: > > -Original Message- > From: r-help-boun...@r-project.org [mailto:r-help-boun...@r-project.org] > On > Behalf Of Karl Ove Hufthammer > Sent: Tuesday, October 06, 2009 1:56 PM > To: r-h...@stat.math.et

Re: [R] Vim-R-plugin (new version)

2009-10-06 Thread Andrew Choens
__ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.

[R] 'dbSendQuery' or 'dbGetQuery' error from library 'RMySQL'

2009-10-06 Thread Steven Kang
Dear R users, Basically, I desire to extract more than 1 column from a table in MySQL database. However, I get a pop-up error reading *"R for Windows GUI front-end has encountered a problem and needs to close. We are sorry for the incovenience."* when there are more than 1 field following "SELEC

Re: [R] 'persp' query

2009-10-06 Thread David Winsemius
I'm pretty sure side =2 will put it on the left hand side. May only work for specific views. You would also want to assign an empty string to the persp zlab (although that's from memory and I don't have a session running to look up the argument.) -- David. On Oct 6, 2009, at 7:02 PM, Geo

Re: [R] 'persp' query

2009-10-06 Thread Geoffrey William Heard
Much thanks David and Peter I thought about mtext, but didn't try it, as was unsure what the appropriate 'side' value would be. Any thoughts? Cheers Geoff -Original Message- From: Peter Ehlers [mailto:ehl...@ucalgary.ca] Sent: Wednesday, 7 October 2009 1:43 AM To: David Winsemius Cc: G

[R] MCMClogit confusion

2009-10-06 Thread AlexanderDueDo
Hello, running the code simulatedCase <- rbinom(100,1,0.5) simDf <- data.frame(CASE = simulatedCase) posterior_m0 <<- MCMClogit(CASE ~ 1, data = simDf, b0 = 0, B0 = 1) always results in an acceptance ratio of 0. If I do not specify b0 and B0, this does not occur. I do not understand the reasons

[R] gnu ODBC driver for ORACLE in WinXP platform?

2009-10-06 Thread Kenneth Roy Cabrera Torres
Hi R users and Dr. Uwe Ligges: I read on the ROracle pre-compiled binary README file that: "Although the package ROracle passes make check, it seems to be dangerous to distribute it: I do not have the software available this package depends on." Why it is dangerous to use ROracle for windows? Wh

Re: [R] Unable to load 'doBy' package

2009-10-06 Thread cls59
Lauren Szathmary wrote: > > Hi all, > > I am trying to load the doBy package, and I am getting the following > error: > >> library(doBy) > Error in loadNamespace(i[[1L]], c(lib.loc, .libPaths())) : > there is no package called 'Hmisc' > Error: package/namespace load failed for 'doBy' > >

Re: [R] Unable to load 'doBy' package

2009-10-06 Thread Lauren Szathmary
Thanks! I installed the Hmisc package and doBy loaded with no problem. On Wed, Oct 7, 2009 at 1:08 AM, joris meys wrote: > Hi Lauren, > > from the error message it looks like you have a problem with the > package "Hmisc". doBy is dependent on that one. Can you check whether > Hmisc is installed

Re: [R] Fwd: Long for Loop- calling C from R - Parallel Computing

2009-10-06 Thread Bert Gunter
-Original Message- From: r-help-boun...@r-project.org [mailto:r-help-boun...@r-project.org] On Behalf Of Karl Ove Hufthammer Sent: Tuesday, October 06, 2009 1:56 PM To: r-h...@stat.math.ethz.ch Subject: Re: [R] Fwd: Long for Loop- calling C from R - Parallel Computing Antonio Paredes skre

Re: [R] Fwd: Long for Loop- calling C from R - Parallel Computing

2009-10-06 Thread Karl Ove Hufthammer
Antonio Paredes skreiv: > I'm hoping to get a response from some of the R gurus in this list. Is my > assumption that R is not designed or build to deal with high levels (a > lots of simulated data) simulation correct. For example, how to minimize > system time; do one have to call a lower level l

Re: [R] plot an arrow / add arrow to a line

2009-10-06 Thread Sarah Goslee
How about arrows() ? On Tue, Oct 6, 2009 at 4:25 PM, Martin Batholdy wrote: > hi, > > is it possible to end a line plotted with lines() with an arrow? > Or are there any other functions to add an arrow to plot? > > > thanks! > -- Sarah Goslee http://www.functionaldiversity.org _

[R] plot an arrow / add arrow to a line

2009-10-06 Thread Martin Batholdy
hi, is it possible to end a line plotted with lines() with an arrow? Or are there any other functions to add an arrow to plot? thanks! __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide

Re: [R] R on Linux, and R on Windows , any difference in maturity+stability?

2009-10-06 Thread Bert Gunter
Folks: 1. No blame implied to anyone. However, as 64 bit Windows/R build is apparently not available except as a commercial product, may I suggest that henceforth it should not be discussed in this list and that any queries about it simply be directed to David Smith at Revolution. It just doesn't

Re: [R] ggplot equivalent of par(xaxt)

2009-10-06 Thread John Kane
Blindingly obvious!! Thanks for that. I can see it will help me find more than one option that I've been interested in. --- On Tue, 10/6/09, baptiste auguie wrote: > From: baptiste auguie > Subject: Re: [R] ggplot equivalent of par(xaxt) > To: "John Kane" > Cc: "R R-help" > Received: Tues

Re: [R] Mixed effect multinomial regression

2009-10-06 Thread Michael Conklin
The bayesm package implements such models. Hth, Mike On Tue, 6 Oct 2009 12:41:18 -0700 James Martin wrote: > Hello list, > > I was trying to investigate the possible use of a mixed effect > multinomial logit model in R. Does anyone have suggestions on where > to find information on these mo

[R] Bifurcating Autoregression

2009-10-06 Thread Shawn Garbett
Is there any R package that implements a bifurcating autoregression, aka the BAR(n) model? I've been reading the Huggins and Staudte paper, "Variance Components Models for Dependent Cell Populations", from the Journal of the American Statistical Association, 1994. Shawn Garbett Vanderbilt

[R] Mixed effect multinomial regression

2009-10-06 Thread James Martin
Hello list, I was trying to investigate the possible use of a mixed effect multinomial logit model in R. Does anyone have suggestions on where to find information on these models and the associated functions in R. Thanks in advance, jm -- James A. Martin 850-445-9773 [[alternative HT

Re: [R] ggplot2: mapping categorical variable to color aesthetic with faceting

2009-10-06 Thread Bryan Hanson
A few days ago on the list I had wrestled with the aes() vs aes_string() issue, along with the same issue with facetting. The way I ended up handling the point you bring up, Baptiste, is perhaps rather inefficient but my data sets are not large. I allow the user to pass variables, then I use that

Re: [R] Text editors for Sweave (rnw) files

2009-10-06 Thread Giovanni Petris
Emacs + ESS does too. Giovanni > Date: Tue, 06 Oct 2009 12:34:28 -0400 > From: Gabor Grothendieck > Sender: r-help-boun...@r-project.org > Cc: r-help@r-project.org > Precedence: list > DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=gmail.com; s=gamma; > h=domainkey-signature:mime

Re: [R] Is there a recent book on Q-Q plot and data visualization in general?

2009-10-06 Thread Peng Yu
Hi, I checked the 3rd edition of this book. But I don't find Q-Q plot. Would you please take a look of the table of content below and let me know if the same section is available in the 3rd edition? http://www.amazon.com/Plane-Answers-Complex-Questions-Theory/dp/0387953612/ref=sr_1_1?ie=UTF8&s=bo

Re: [R] ggplot equivalent of par(xaxt)

2009-10-06 Thread baptiste auguie
body(theme_grey) could help you find the name of a particular option (that's what I did). baptiste 2009/10/6 John Kane : > Lovely.  I knew it was not that difficult, I had even gotten as far as > deciding it had to be an opts() command but I had no idea of what it was. > > Thanks very much. > >

Re: [R] ggplot equivalent of par(xaxt)

2009-10-06 Thread John Kane
Lovely. I knew it was not that difficult, I had even gotten as far as deciding it had to be an opts() command but I had no idea of what it was. Thanks very much. --- On Tue, 10/6/09, baptiste auguie wrote: > From: baptiste auguie > Subject: Re: [R] ggplot equivalent of par(xaxt) > To: "Joh

Re: [R] ggplot equivalent of par(xaxt)

2009-10-06 Thread baptiste auguie
Hi, 2009/10/6 John Kane : > How do I suppress the numbers on the x-axis? > Try this, p + opts(axis.text.x = theme_blank()) HTH, baptiste > Thanks > > >      __ > [[elided Yahoo spam]] > > ___

Re: [R] R on Linux, and R on Windows , any difference in maturity+stability?

2009-10-06 Thread David M Smith
I wanted to correct a couple of misconceptions raised in Jose's post below, which I'll take the liberty of addressing out of order. On Tue, Oct 6, 2009 at 7:34 AM, Jose Quesada wrote: > While revolution has > provided very nice packages to the community (e.g., foreach), the win-64 port > as > of

[R] ggplot equivalent of par(xaxt)

2009-10-06 Thread John Kane
I am playing around learning ggplot and cannot see how to suppress the x or y axis values ( equivalent of xaxt in basic graphics) It must be obvious but I'm not seeing it. Problem = timedata <- structure(list(month = structure(c(5

[R] Export to Excel

2009-10-06 Thread johannes rara
I spotted quite nice blog post by learning r blog http://learnr.wordpress.com/2009/10/06/export-data-frames-to-multi-worksheet-excel-file/ very good summary how to export data from R to multiple Excel sheets. - Johannes __ R-help@r-project.org mailing

Re: [R] How to extract names from a vector

2009-10-06 Thread Erik Iverson
vec <- 1:700 names(vec) <- 700:1 names(vec)[grep("101", names(vec))] > -Original Message- > From: r-help-boun...@r-project.org [mailto:r-help-boun...@r-project.org] > On Behalf Of kayj > Sent: Tuesday, October 06, 2009 12:49 PM > To: r-help@r-project.org > Subject: [R] How to extract names

Re: [R] R on Linux, and R on Windows , any difference in maturity+stability?

2009-10-06 Thread Duncan Murdoch
On 10/6/2009 1:43 PM, David M Smith wrote: On Tue, Oct 6, 2009 at 10:30 AM, Duncan Murdoch wrote: When running a 32 bit program, 64 bit Windows hides most of itself outside the address space visible to the program, so almost all of the 4 Gb address space is available to the user. But no more:

Re: [R] Robust ANOVA with variance heterogeneity

2009-10-06 Thread David Winsemius
On Oct 6, 2009, at 1:51 PM, Kjetil Halvorsen wrote: On Sat, Oct 3, 2009 at 2:45 PM, David Winsemius > wrote: Do you have a citation for that statement? I cannot convince myself that it should be true. OK. that took some time, since I have no nonparametrics book with me, but it is a fairly

Re: [R] How to extract names from a vector

2009-10-06 Thread Henrique Dallazuanna
See ?grep On Tue, Oct 6, 2009 at 2:48 PM, kayj wrote: > > Hi All, > > I have a character vector of length=700.  The vector contains names and I > want to extract the names that contain the number 101.  The number 101 could > be anywhere within the name. > > what is the best way to do this? > >

[R] How to extract names from a vector

2009-10-06 Thread kayj
Hi All, I have a character vector of length=700. The vector contains names and I want to extract the names that contain the number 101. The number 101 could be anywhere within the name. what is the best way to do this? -- View this message in context: http://www.nabble.com/How-to-extract-n

[R] how to output profile plots for groups using lattice package

2009-10-06 Thread George Kalema
Dear R users, I am trying to have an xyplot of a data set which has the following variables: case (n=10,20,30) parameter (parm=a,b) group (grp=g1,g2) y (y values) x (x=2,4,8) My plot should be parameter by case such that I have 2 rows (each row= each parameter) and 3 columns (each column=each case

Re: [R] Robust ANOVA with variance heterogeneity

2009-10-06 Thread Kjetil Halvorsen
Hola! see below. On Sat, Oct 3, 2009 at 2:45 PM, David Winsemius wrote: > Do you have a citation for that statement? I cannot convince myself that it > should be true. OK. that took some time, since I have no nonparametrics book with me, but it is a fairly standard assumption the friedman.test

Re: [R] R on Linux, and R on Windows , any difference in maturity+stability?

2009-10-06 Thread David M Smith
On Tue, Oct 6, 2009 at 10:30 AM, Duncan Murdoch wrote: > When running a 32 bit program, 64 bit Windows hides most of itself outside > the address space visible to the program, so almost all of the 4 Gb address > space is available to the user.  But no more: no matter how much RAM you > install, it

Re: [R] R on Linux, and R on Windows , any difference in maturity+stability?

2009-10-06 Thread Duncan Murdoch
On 10/6/2009 1:17 PM, Kjetil Halvorsen wrote: On Tue, Oct 6, 2009 at 11:23 AM, Duncan Murdoch wrote: On 10/6/2009 10:34 AM, Jose Quesada wrote: Robert Wilkins gmail.com> writes: Will R have more glitches on one operating system as opposed to another, or is it pretty much the same? robert

Re: [R] Way of handling empty value when reading in CSV

2009-10-06 Thread jim holtman
Does this do what you want: )> x <- read.csv(textConnection("home,sqr_footage,cost,color,exterior + 1,1500,15,,Siding + 2,2000,20,Red,Brick + 3,,30,Grey,Brick + 4,3500,35,Blue, + 5,4000,45,Red,Brick"), na.strings='') > closeAllConnections() > > x home sqr_footage cost color

Re: [R] ggplot2: mapping categorical variable to color aesthetic with faceting

2009-10-06 Thread Bryan Hanson
Hi Baptiste: Thanks for the suggestion. It will work perfectly. I would have never considered assigning a color to a variable that contained no colors at all! I guess this is part of the aesthetic concept, which I haven't had time to reflect on much. Then later, specify a manual color scale wh

Re: [R] R on Linux, and R on Windows , any difference in maturity+stability?

2009-10-06 Thread Kjetil Halvorsen
On Tue, Oct 6, 2009 at 11:23 AM, Duncan Murdoch wrote: > On 10/6/2009 10:34 AM, Jose Quesada wrote: >> >> Robert Wilkins gmail.com> writes: >> >>> >>> Will R have more glitches on one operating system as opposed to >>> another, or is it pretty much the same? >>> >>> robert >>> >>> >> >> One impor

Re: [R] Way of handling empty value when reading in CSV

2009-10-06 Thread Jason Rupert
Well, I guess I posted a poor example. This example is a little closer: home,sqr_footage,cost,color,exterior 1,1500,15,,Siding 2,2000,20,Red,Brick 3,,30,Grey,Brick 4,3500,35,Blue, 5,4000,45,Red,Brick This one actually shows the presence of the null fields that are loaded. So

Re: [R] Spatial Autocorrelation

2009-10-06 Thread spencerg
In addition to the taskview (below), you might consider using the "sos" package, something like the following: sa <- ???'spatial autocorrelation' # 58 matches sc <- ???'spatial correlation' # 181 matches s. <- sa|sc # union of the to 'findFn' objects summary(s.) # 224 links in 57 packages ins

Re: [R] ggplot2: mapping categorical variable to color aesthetic with faceting

2009-10-06 Thread baptiste auguie
Further to my previous reply, it occurred to me that ggplot2 would only ever use data and colors in your calls to compareCats(): res = res, fac1 = fac1, fac2 = fac2 have no effect whatsoever. If you want the user to be able to specify the variables used in the ggplot2 call, you probably want to lo

Re: [R] mle from stats4

2009-10-06 Thread Ben Bolker
Stephen Collins-6 wrote: > > I am using mle as a wrapper from optim( ). How would I extract the > convergence code, to know that optim( ) converged properly? > > library(stats4) example(mle) slotNames(fit1) f...@details f...@details$convergence -- View this message in context: http://

Re: [R] mle from stats4

2009-10-06 Thread Peter Dalgaard
Stephen Collins wrote: I am using mle as a wrapper from optim( ). How would I extract the convergence code, to know that optim( ) converged properly? The return value from optim is contained in the details slot, so > f...@details$convergence [1] 0 -- O__ Peter Dalgaard

Re: [R] Text editors for Sweave (rnw) files

2009-10-06 Thread Steve Lianoglou
Hi, On Oct 6, 2009, at 12:30 PM, Gregory Gentlemen wrote: Hi fellow R-users, Are there any text editors that recognize sweave (.rnw) files? I am running Windows Vista and in the past I used Tinn-R for R files but it (surprisingly) doesn't recognize rnw files and does not do any syntax hi

Re: [R] Fwd: Long for Loop- calling C from R - Parallel Computing

2009-10-06 Thread jim holtman
It would help to understand the problem you are trying to solve and the constraints that you have to live under. I routinely process files with millions of rows of data, do a lot of processing and create graphics/reports from them in what I think is reasonable time (a couple of minutes at most for

Re: [R] Way of handling empty value when reading in CSV

2009-10-06 Thread Erik Iverson
I saved your data as test.csv, and > read.csv("~/test.csv", header = TRUE) home sqr_footage cost 111500 15 222000 20 33 NA 30 443500 35 554000 45 I am using R 2.8.1, old I know... but maybe something else is goi

Re: [R] Letter-based representation of pairwise comparisons

2009-10-06 Thread retama
Hello: That's because the required input should be a symmetric matrix with all the comparisons, e.g., it should have the self-comparisons diagonal. In an hypotetical case with two treatments, the pairwise-comparison test output is something like that: A B B 0.80- but multcompV

[R] linear model with coefficient constraints

2009-10-06 Thread Rnewb
I would like to perform a regression like the one below: lm(x ~ 0 + a1 + a2 + a3 + b1 + b2 + b3 + c1 + c2 + c3, data=data) However, the data has the property that a1+a2+a3 = A, b1+b2+b3 = B, and c1+c2+c3 = C, where A, B, and C are positive constants. So there are two extra degrees of freedom, a

Re: [R] Text editors for Sweave (rnw) files

2009-10-06 Thread Liviu Andronic
On 10/6/09, Gregory Gentlemen wrote: > Are there any text editors that recognize sweave (.rnw) files? I am running > Windows Vista and in the past I used Tinn-R for R files but it (surprisingly) > doesn't recognize rnw files and does not do any syntax highlighting for them. > Slightly off-topic

Re: [R] Date-Time-Stamp input method for user-specific formats

2009-10-06 Thread esp
Another solution, as a fix to my original algorithm, was found by a colleague (Matthew Roberts). While he claims not too much for its elegance, it does seem to work. This fix is based on the use of the 'pmax' function. This function is a variant of the 'max' (maximum) function to return a vecto

[R] mle from stats4

2009-10-06 Thread Stephen Collins
I am using mle as a wrapper from optim( ). How would I extract the convergence code, to know that optim( ) converged properly? Thanks, Stephen Collins, MPP | Analyst Global Strategy | Aon Benfield [[alternative HTML version deleted]] __ R

[R] Way of handling empty value when reading in CSV

2009-10-06 Thread Jason Rupert
I believe I may be overlooking something simple in order address this, but I have searched RSeek.org and using "?", but cannot seem to find anything discussing this one. I am using read.csv to read in a csv file. Evidently in places there is nothing between the commas, so that when the data i

Re: [R] ggplot2: mapping categorical variable to color aesthetic with faceting

2009-10-06 Thread baptiste auguie
Hi, I may be missing an important design decision, but could you not have only a single data.frame as an argument of your function? From your example, it seems that the colour can be mapped to the fac1 variable of "data", compareCats <- function(data) { require(ggplot2) p <- ggplot(data, a

Re: [R] Text editors for Sweave (rnw) files

2009-10-06 Thread Gabor Grothendieck
vim/gvim does syntax highlighting of R, Sweave and latex. On Tue, Oct 6, 2009 at 12:30 PM, Gregory Gentlemen wrote: > Hi fellow R-users, > > Are there any text editors that recognize sweave (.rnw) files? I am running > Windows Vista and in the past I used Tinn-R for R files but it (surprisingly)

Re: [R] Text editors for Sweave (rnw) files

2009-10-06 Thread Erik Iverson
Emacs with ESS would be one way to go. When editing a RNW file in ESS, you can use a key combination to go from RNW directly to PS or PDF, which is nice. Erik > -Original Message- > From: r-help-boun...@r-project.org [mailto:r-help-boun...@r-project.org] > On Behalf Of Gregory Gentlem

[R] Text editors for Sweave (rnw) files

2009-10-06 Thread Gregory Gentlemen
Hi fellow R-users, Are there any text editors that recognize sweave (.rnw) files? I am running Windows Vista and in the past I used Tinn-R for R files but it (surprisingly) doesn't recognize rnw files and does not do any syntax highlighting for them. Thanks in advance, Greg ___

Re: [R] Date-Time-Stamp input method for user-specific formats

2009-10-06 Thread esp
esp wrote: > > For the function as defined above using 'sapply' >> spot[,1] > 01/09/2009 01/09/2009 00:00:01 01/09/2009 00:00:02 01/09/2009 > 00:00:03 > 1251759600 1251759601 1251759602 > 1251759603 > > This was unexpected - it seems to have display

Re: [R] IRLS or other iteratively re weighted optimization algorithms with constraints in R

2009-10-06 Thread David Winsemius
On Oct 6, 2009, at 12:14 PM, Corrado wrote: Dear list, is there an iterative re weighted least square based algorithm or any or other iteratively re weighted optimisation algorithms for non linear (and possibly non parametric) optimisation problems with constraints available in R? Have

[R] ggplot2: mapping categorical variable to color aesthetic with faceting

2009-10-06 Thread Bryan Hanson
Hello Again... I¹m making a faceted plot of a response on two categorical variables using ggplot2 and having troubles with the coloring. Here is a sample that produces the desired plot: compareCats <- function(data, res, fac1, fac2, colors) { require(ggplot2) p <- ggplot(data, aes(fac1,

[R] IRLS or other iteratively re weighted optimization algorithms with constraints in R

2009-10-06 Thread Corrado
Dear list, is there an iterative re weighted least square based algorithm or any or other iteratively re weighted optimisation algorithms for non linear (and possibly non parametric) optimisation problems with constraints available in R? Regards -- Corrado

[R] tkProgressBar usage

2009-10-06 Thread deepthi c
I have a frame and I want to fix the progress bar onto it.I do not want progress bar to display as another GUI.how do i embed progress bar onto a frame ? -- Dipti [[alternative HTML version deleted]] __ R-help@r-project.org mailing list https:

Re: [R] Linear mixed effects model ?

2009-10-06 Thread Dieter Menne
Daniel Perkins wrote: > > > Ideally we would do an ANCOVA to test for differences in slope or > intercepts for the different streams. However as there were repeated > measures and unequal n and unbalanced design, I have used a linear mixed > effect model (from nlme package in R) in the form

Re: [R] else if statement error

2009-10-06 Thread Gabor Grothendieck
2009/10/6 Uwe Ligges : > > > Gabor Grothendieck wrote: >> >> 2009/10/6 Uwe Ligges : >>> >>> The first rule is easy: As long as you are using scalar valued (i.e. >>> length >>> 1 vectors in R) "cond", you should prefer >>>  if(cond) cons.expr  else  alt.expr >>> rather than >>>  ifelse(cond, yes, no

Re: [R] R on Linux, and R on Windows , any difference in maturity+stability?

2009-10-06 Thread Duncan Murdoch
On 10/6/2009 10:34 AM, Jose Quesada wrote: Robert Wilkins gmail.com> writes: Will R have more glitches on one operating system as opposed to another, or is it pretty much the same? robert One important difference is that, if you are unsing large datasets and need memory, then windows is

Re: [R] linear model with coefficient constraints

2009-10-06 Thread Dieter Menne
Rnewb wrote: > > I would like to perform a regression like the one below: > > lm(x ~ 0 + a1 + a2 + a3 + b1 + b2 + b3 + c1 + c2 + c3, data=data) > > However, the data has the property that a1+a2+a3 = A, b1+b2+b3 = B, and > c1+c2+c3 = C, where A, B, > Ravi Varadhan has an example how this co

[R] RES: RES: Plot

2009-10-06 Thread Rodrigo Aluizio
Oh yeah, I forgot that, just correct this by: Data<-as.data.frame(matrix(c("Monday", "Tuesday", "Wed", "Thu", "Fri","Sat","Sun",56,57,60,75,62,67,70,76,77,81,95,82,77,83),ncol=3,nrow=7,l ist(paste('Row',1:7,sep=''),c('Days','Hum','Temp')),byrow=F)) Data$Hum<-as.numeric(Data$Hum) Data$Temp<-as.nume

Re: [R] ggplot cumsum refined question (?)

2009-10-06 Thread stephen sefick
The date time stamp is not the same? data.frame(as.chron(Cumul[,"date_time"]), DF[,"date_time"]) On Tue, Oct 6, 2009 at 9:31 AM, hadley wickham wrote: >> It is much easier to do you data preparation before plotting. >> >> Cummul <- ddply(subset(DF, precipitation!="NA"), "gauge_name", >> function

Re: [R] Letter-based representation of pairwise comparisons

2009-10-06 Thread goz
Ok, thanks for all your responses, i was thinking, after reading the firsts messages that use only the $p.value was good. By using a symetric matrix results are ok. It's also good with a pvalue vector (just like exemples in the help ...). many thanks for your help -- View this message in c

Re: [R] how to fit time varying coefficient regression model?

2009-10-06 Thread Alain Zuur
R_help Help wrote: > > Hi - I read through dse package manual a bit. I'm not quite certain > how I can use it to estimate a time varying coefficient regression > model? I might pick up an inappropriate package. Any suggestion would > be greatly appreciated. Thank you. > > > Just rewrite the l

Re: [R] Plot

2009-10-06 Thread Petr PIKAL
Hi beside other options if you do not want to learn how to order factor levels Days <- c("Monday", "Tuesday", "Wed", "Thu", "Fri", "Sat","Sun") Hum <-c(56,57,60,75,62,67,70) Temp<-c(76,77,81,95,82,77,83) > limits<-range(c(Hum, Temp)) > limits [1] 56 95 > plot(1:7, Hum, ylim=limits) > points(1:7

Re: [R] GLM quasipoisson error

2009-10-06 Thread Alain Zuur
atorso wrote: > > Hello, > > I'm having an error when trying to fit the next GLM: > >>>model<-glm(response ~ CLONE_M + CLONE_F + HATCHING > +(CLONE_M*CLONE_F) + (CLONE_M*HATCHING) + (CLONE_F*HATCHING) + > (CLONE_M*CLONE_F*HATCHING), family=quasipoisson) >>> anova(model, test="Chi") > > > >

[R] RES: Plot

2009-10-06 Thread Rodrigo Aluizio
This may work for you. Then you can custom your graphics with ?par. Data<-as.data.frame(matrix(c("Monday", "Tuesday", "Wed", "Thu", "Fri", "Sat","Sun",56,57,60,75,62,67,70,76,77,81,95,82,77,83),ncol=3,nrow=7,list(pa ste('Row',1:7,sep=''),c('Days','Hum','Temp')),byrow=F)) plot(Data$Days,Data$Temp)

Re: [R] Is there a recent book on Q-Q plot and data visualization in general?

2009-10-06 Thread Paul Hiemstra
Hi Peng Yu, Chapter 13 of the following book provides a good description of the assumption done when using regression and other techniques. It also discusses the QQplot. @BOOK{Christensen1996, title = {Plane Answers to Complex Questions: The Theory of Linear Models}, publisher = {Springer,

Re: [R] 'persp' query

2009-10-06 Thread Peter Ehlers
David Winsemius wrote: On Oct 6, 2009, at 4:46 AM, Geoffrey William Heard wrote: Hi All I'm creating some 3-D plots using the function 'persp', and have a query regarding the ability to make changes to the label of the z-axis. There are two things I would like to do. First, the default s

[R] Is there a recent book on Q-Q plot and data visualization in general?

2009-10-06 Thread Peng Yu
Hi, I want to look for some detailed explanation on the properties of Q-Q plot and how the properties are derived. In R, there is the following reference. Becker, R. A., Chambers, J. M. and Wilks, A. R. (1988) The New S Language. Wadsworth & Brooks/Cole. Somebody also mentioned the following boo

Re: [R] Plot

2009-10-06 Thread joris meys
Actually, it's a bit more complex than just plot(). First you have to make Days an ordered factor, otherwise you get indeed that error. days <- c("Mon", "Tue", "Wed", "Thu", "Fri", "Sat","Sun") Days <- factor(days,levels=days,ordered=T) Then you want to make a plot with 2 axes, you should check :

Re: [R] Plot

2009-10-06 Thread Ashta
Thanks Sara, Yes I did try. I could not get the Days on the X-axis blow is theerror message plot(Temp,Days) Error in plot.window(...) : need finite 'ylim' values In addition: Warning messages: 1: In xy.coords(x, y, xlabel, ylabel, log) : NAs introduced by coercion 2: In min(x) : no non-missing a

Re: [R] Letter-based representation of pairwise comparisons

2009-10-06 Thread hadley wickham
Please provide a reproducible example. I've had problems with multcompLetters in the past, because I was giving it slightly incorrect input. Hadley On Tue, Oct 6, 2009 at 7:41 AM, goz wrote: > > hello, > > i try to use the multcomp letters, but i have problems with my results : > > here is my p

Re: [R] R on Linux, and R on Windows , any difference in maturity+stability?

2009-10-06 Thread Jose Quesada
Robert Wilkins gmail.com> writes: > > Will R have more glitches on one operating system as opposed to > another, or is it pretty much the same? > > robert > > One important difference is that, if you are unsing large datasets and need memory, then windows is by far the worst. CRAN R is 32 b

Re: [R] ggplot cumsum refined question (?)

2009-10-06 Thread hadley wickham
> It is much easier to do you data preparation before plotting. > > Cummul <- ddply(subset(DF, precipitation!="NA"), "gauge_name", > function(x){ >        x$Cummul <- cumsum(x$precipitation) >        x > }) With a little less typing: Cummul <- ddply(subset(DF, precipitation!="NA"), "gauge_name",

Re: [R] Viewing specific data from a dataframe

2009-10-06 Thread Peter Ehlers
If I understand correctly, you can use which( ,arr.ind=TRUE): Assuming that you start with a data frame, dat <- as.data.frame(matrix(runif(30), ncol=5)) nm <- names(dat) cormat <- cor(dat) cormat[lower.tri(cormat, diag=TRUE)] <- NA idx <- which(cormat > 0.4, arr.ind=TRUE) idx cbind(nm[idx

Re: [R] ggplot cumsum refined question (?)

2009-10-06 Thread ONKELINX, Thierry
Dear Stephen, It is much easier to do you data preparation before plotting. Cummul <- ddply(subset(DF, precipitation!="NA"), "gauge_name", function(x){ x$Cummul <- cumsum(x$precipitation) x }) ggplot(Cummul, aes(x = date_time, y = Cummul)) + geom_line() + facet_wrap(~gauge_name, s

Re: [R] Plot

2009-10-06 Thread Sarah Goslee
Did you try it? With, perhaps, plot() ? And lines() ? You might do better with Days as a factor with the day names in order. (And why are two full and five abbreviated?) I don't understand why Hum and Temp are matrices rather than vectors, and why then you didn't specify dimensions, and for that

Re: [R] else if statement error

2009-10-06 Thread Uwe Ligges
Gabor Grothendieck wrote: 2009/10/6 Uwe Ligges : The first rule is easy: As long as you are using scalar valued (i.e. length 1 vectors in R) "cond", you should prefer if(cond) cons.expr else alt.expr rather than ifelse(cond, yes, no) because the latter one evaluates both "yes" and "no" whi

[R] Fwd: Long for Loop- calling C from R - Parallel Computing

2009-10-06 Thread Antonio Paredes
-- Forwarded message -- From: Antonio Paredes Date: Tue, Oct 6, 2009 at 9:41 AM Subject: Re: [R] Long for Loop- calling C from R - Parallel Computing To: Karl Ove Hufthammer Hello again, I'm hoping to get a response from some of the R gurus in this list. Is my assumption that R

[R] ggplot cumsum refined question (?)

2009-10-06 Thread stephen sefick
OK, so maybe last night was a little too much at one throw, so I have reduced the data to two stations- one that has precipitation and one that does not. This is going to be in the context of a larger data set. I would like to be able to issue a ggplot command and have cum sum just act on the fac

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