Re: [R] plot ᵒ C in graph axis label

2009-10-01 Thread baptiste auguie
Hi, You cannot start with a "*" in expression(). Try this, plot(x~y,ylab=expression(~degree~C)) or even, as a short-cut, plot(x~y,ylab=~degree~C) HTH, baptiste 2009/10/2 e-letter : > Readers, > > I have tried to use a plotmath command to add the temperature degree > sign (i.e. ᵒ C) to the

Re: [R] Compress (gzip) a pdf device

2009-10-01 Thread Rainer M Krug
On Thu, Oct 1, 2009 at 7:26 PM, Martin Renner < martin.ren...@stonebow.otago.ac.nz> wrote: > try pdftk. Not quite on the fly but should do the trick. (I saw this on > this list a little while ago) > pdftk compresses the pdf internally - it is still a pdf, can be opened as a pdf, and is not an ext

[R] plot ᵒ C in graph axis label

2009-10-01 Thread e-letter
Readers, I have tried to use a plotmath command to add the temperature degree sign (i.e. ᵒ C) to the axis label of a graph: > x<-(1:10) > y<-(200:191) > plot(x~y,ylab=expression(*degree~C)) Error: syntax error, unexpected '*', expecting ',' in "plot(x~y,ylab=expression(*" According to plotmath m

Re: [R] changing number of axis

2009-10-01 Thread Dan Kortschak
Thanks for that again. That almost works, except that lines are drawn between non-empty bins (in various degrees of diagonality), so absent points (important here) don't show clearly. It's not a huge issue, so I might leave it, unless there is a simple way around this. cheers Dan On Tue, 2009-09-

[R] What did I do wrong? Bootstrap with glm

2009-10-01 Thread Chunhao Tu
Hi R users, I just play with a small data set (from SAS) by using the boot with glm. But I don't know what I did wrong. Would someone please give me a hint? > require(boot) > carc<-read.table(file="C:\\Documents and > Settings\\admin\\Desktop\\drug.txt",header=T) > carc n cc car age 1 500

Re: [R] removing missing values from a matrix

2009-10-01 Thread Amit Kumar
Thanks! It worked! There is another problem I want to subset the matrix 'red' in following manner: >dim(red) 23688 164 >a=red[1:23688,1:4] >b=red[1:23688,5:8] >c=red[1:23688,9:12] .. .. >z=red[1:23688,161:164] If there any efficient way to

Re: [R] Minimum and blanks

2009-10-01 Thread Chris Li
Thanks Joris and Peter. Sorry for not giving enough details. I have tried your suggestions and the problem is solved. Thank you. :) JorisMeys wrote: > > The minimum of a character vector is returned according to the unicode > or ascii code values, but I guess that's not what Chris is looking >

Re: [R] split-apply question

2009-10-01 Thread andrew
?subset is probably what you want: subset(x, x1 == 'A') On Oct 2, 1:43 pm, Kavitha Venkatesan wrote: > Hi, > > I have a data frame that looks like this: > > >x > > x1  x2  x3 > A   1    1.5 > B   2    0.9 > B   3    2.7 > C   7    1.8 > D   7    1.3 > > I want to "group" by the x1 column and in

Re: [R] Compress (gzip) a pdf device

2009-10-01 Thread Martin Renner
try pdftk. Not quite on the fly but should do the trick. (I saw this on this list a little while ago) pdfComp <- function (pdfname){ if (0){ x <- tempfile() system (paste ("mv", pdfname, x)) system (paste ("pdftk", x, "output", pdfname, "compress")) unlink (x) } } pdf ("te

[R] split-apply question

2009-10-01 Thread Kavitha Venkatesan
Hi, I have a data frame that looks like this: >x x1 x2 x3 A 11.5 B 20.9 B 32.7 C 71.8 D 71.3 I want to "group" by the x1 column and in the case of multiple x$x1 values (e.g., "B")d, return rows that have the smallest values of x2. In the case of rows with only on

Re: [R] How to get duplicated items in a vector?

2009-10-01 Thread William Dunlap
Bill Dunlap TIBCO Software Inc - Spotfire Division wdunlap tibco.com > -Original Message- > From: r-help-boun...@r-project.org > [mailto:r-help-boun...@r-project.org] On Behalf Of Peng Yu > Sent: Thursday, October 01, 2009 7:42 PM > To: r-h...@stat.math.ethz.ch > Subject: [R] How to g

Re: [R] How to get duplicated items in a vector?

2009-10-01 Thread Gabor Grothendieck
Try this: > x <- c(1, 2, 3, 3, 4, 5) > ave(x, x, FUN = length) > 1 [1] FALSE FALSE TRUE TRUE FALSE FALSE On Thu, Oct 1, 2009 at 10:42 PM, Peng Yu wrote: > Hi, > >> x=c(rep(1,3),rep(3,2)) >> x > [1] 1 1 1 3 3 >> duplicated(x) > [1] FALSE  TRUE  TRUE FALSE  TRUE >> > > As shown in the above co

[R] How to get duplicated items in a vector?

2009-10-01 Thread Peng Yu
Hi, > x=c(rep(1,3),rep(3,2)) > x [1] 1 1 1 3 3 > duplicated(x) [1] FALSE TRUE TRUE FALSE TRUE > As shown in the above code, 'duplicated' doesn't return 'F' for the first '1' and first '3' in 'x'. I am wondering if there is a function that can return an indicator for any element whether it appe

[R] confint fails in quasibinomial glm: dims do not match

2009-10-01 Thread smith_cc
I am unable to calculate confidence intervals for the slope estimate in a quasibinomial glm using confint(). Below is the output and the package info for MASS. Thanks in advance! R 2.9.2 MASS 7.2-48 > confint(glm.palive.0.str) Waiting for profiling to be done... Error: dims [product 37] do not m

Re: [R] How to use Subpopulation data?

2009-10-01 Thread KABELI MEFANE
Thanks   But it seems like you don't get my problem. Do you mean that there is something wrong with the code as it seems like  what you are doing is suggesting different ways to write a code.   Will i get to use the variable that have been name previously like if i want to calculate the standa

Re: [R] Level name as object name

2009-10-01 Thread jim holtman
assign(levels(data$Species)[1], 1:10) or you might want to consider the use of a list depending on what you are trying to do. On Thu, Oct 1, 2009 at 7:26 PM, jimdare wrote: > > Hi, > > If I have a dataset called "data" with a factor called "Species" that has > three levels "Sp1", "Sp2", and "Sp3

Re: [R] removing missing values from a matrix

2009-10-01 Thread Rolf Turner
On 2/10/2009, at 1:03 PM, Carvalho, Benilton wrote: I agree with you folks, my assumption is that the user knows what he's doing. Almost surely a rash assumption! (I.e. except for a set of users of probability zero.) :-) cheers, Rolf T

Re: [R] removing missing values from a matrix

2009-10-01 Thread Carvalho, Benilton
I agree with you folks, my assumption is that the user knows what he's doing. Sent from my iPhone On Oct 1, 2009, at 8:33 PM, "Rolf Turner" wrote: > > On 2/10/2009, at 12:05 PM, Bert Gunter wrote: > >> However, I would hazard the guess that doing this is a (possibly >> disastrously) bad idea >

Re: [R] removing missing values from a matrix

2009-10-01 Thread Rolf Turner
On 2/10/2009, at 12:05 PM, Bert Gunter wrote: However, I would hazard the guess that doing this is a (possibly disastrously) bad idea I heartily second that hazard!!! cheers, Rolf Turner Bert Gunter Genentech Nonclinical Biostatistics ---

[R] Level name as object name

2009-10-01 Thread jimdare
Hi, If I have a dataset called "data" with a factor called "Species" that has three levels "Sp1", "Sp2", and "Sp3". Is there a way to name an object after a specific level? I have tried the code below and get the error "error in paste(levels(data$Species)[1]) <- 1:10 could not find function "

Re: [R] removing missing values from a matrix

2009-10-01 Thread Bert Gunter
However, I would hazard the guess that doing this is a (possibly disastrously) bad idea. Bert Gunter Genentech Nonclinical Biostatistics -Original Message- From: r-help-boun...@r-project.org [mailto:r-help-boun...@r-project.org] On Behalf Of Carvalho, Benilton Sent: Thursday, October

Re: [R] removing missing values from a matrix

2009-10-01 Thread Carvalho, Benilton
red[is.na(red)] <- 0 Sent from my iPhone On Oct 1, 2009, at 7:22 PM, "Amit Kumar" wrote: > Hi! All, > I am working with a large matrix of dimension 23689 x 162. Some of the > values of this matrix is missing (NA). And it looks something like > that: > >> dim(red) > 23689 162 > >> red >

Re: [R] Using optimize with array variables

2009-10-01 Thread Charles C. Berry
On Thu, 1 Oct 2009, Vik wrote: Thanks Charles, I have been able to change the function and to make it work. I have also gotten the same results using nlm(). Now the question I have (and that google has not helped on) is which optimization functions can I use for solving for two distinct variabl

[R] removing missing values from a matrix

2009-10-01 Thread Amit Kumar
Hi! All, I am working with a large matrix of dimension 23689 x 162. Some of the values of this matrix is missing (NA). And it looks something like that: >dim(red) 23689 162 >red [,1] [,2] [,3] [,4] [,5] [1,]2 NA4 9 6 [2,]5 NA6 NA 1 [3,] NA

Re: [R] aproximate a titration kurve to the measure data.

2009-10-01 Thread awayguy
yes, halo thank you. my measure data: v2 <- c(0, 2, 4, 6, 6.2, 6.4, 6.6, 6.8, 7, 7.2, 7.4, 7.6, 7.8, 8, 10, 12, 14) ph2 <- c(12.10, 11.94, 11.68, 11.11, 10.91, 10.74, 10.47, 9.71, 7.1, 4.24, 3.3, 3.08, 2.98, 2.86, 2.33, 2.11, 1.98) with regards bartjoosen wrote: > > Hi, > > This should be poss

Re: [R] How to use Subpopulation data?

2009-10-01 Thread Bernardo Rangel Tura
On Thu, 2009-10-01 at 13:34 +, KABELI MEFANE wrote: > ## package sampling > > stra=strata(sampleframe,c("type","value","rating"),size=c(20,80,200,300,400), > method="srswor") > sample.strat<-getdata(sampleframe,stra) > > sample.strat > Try: stra<-strata(sampleframe,size=c(20,80,200,300,400

Re: [R] Help me replace a for loop with an "apply" function

2009-10-01 Thread jim holtman
What I am doing is trying to determine where the dates are not sequential (difference is not one day). Everytime that this occurs, the expression 'diff(.days) != 1' is TRUE and this is where a new sequence starts. 'diff' will return a vector one shorter than its input; I am assuming that the firs

Re: [R] How to use Subpopulation data?

2009-10-01 Thread KABELI MEFANE
helpers     I have tried doing everything i can but i think my problem may be solved by even one command or statement. If i have a dataframe with variale name A,B,C and i subset this dataframe, how do i retain the variable names to use in my subset.   In short i need to forget about the origin

Re: [R] caret package for time series applications

2009-10-01 Thread Max Kuhn
Zubin, > Hello, I have some time series applications, where i have a large set of X > variables (hundreds) and thousands of time data points (sampling every > minute). > I like to use the caret package to support the analysis, variable selection > and model selection.  However, reading the documen

Re: [R] Compress (gzip) a pdf device - [ ] Message is from an unknown sender

2009-10-01 Thread Duncan Temple Lang
The latest version of the Rcompression package (www.omegahat.org/Rcompression) provides a gzip() function that does this. The example in the help page shows how. There is a source version of the package in the Omegahat repository (and on the package's Web site), but no binaries at this point.

Re: [R] Using optimize with array variables

2009-10-01 Thread Vik
Thanks Charles, I have been able to change the function and to make it work. I have also gotten the same results using nlm(). Now the question I have (and that google has not helped on) is which optimization functions can I use for solving for two distinct variables instead of only one? Thanks aga

[R] Espresso heuristic logic minimizer for R ?

2009-10-01 Thread Ali Salehi
Hi, I am wondering, does anybody knows if there is any package/function in R I can use to calculate the espresso heuristic logic minimizer ? (http://en.wikipedia.org/wiki/Espresso_heuristic_logic_minimizer) Also, would you please kindly let me know if there is any open source computer algebra s

Re: [R] Can You Recommend Books for Linear Mixed Models in R

2009-10-01 Thread milton ruser
Hi Pat, I am happy with the book "Mixed Effects Models and Extensions in Ecology with R" by Zuur, Ieno, Walker, Saveliev and Smith. In fact I am reading chapter by chapter, and the reading is very digestible, as well as the examples are quite easy to understand and to be reference for our "real wo

[R] inverse currying

2009-10-01 Thread baptiste auguie
Dear list, I have the following function, sugar = function(fun, id = "id"){ ff <- formals(fun) if( id %in% names(ff)) stop("id is part of args(fun)") formals(fun) <- c(unlist(ff), alist(id=)) fun } which one may use on a function foo, foo = function(x){ x } sugar(foo) # results i

Re: [R] Help me replace a for loop with an "apply" function

2009-10-01 Thread gd047
Congratulations! Could you explain to me the reason you add an initial "TRUE" value in the cumulatice sum? jholtman wrote: > > Will this work: > >> x <- read.table(textConnection(" day user_id > + 2008/11/012001 > + 2008/11/012002 > + 2008/11/012003 > + 2008/11/0120

[R] caret package for time series applications

2009-10-01 Thread zubin
Hello, I have some time series applications, where i have a large set of X variables (hundreds) and thousands of time data points (sampling every minute). I like to use the caret package to support the analysis, variable selection and model selection. However, reading the documentation, it l

Re: [R] Normal distribution

2009-10-01 Thread Peter Ehlers
Another interesting visual technique is given by the qreference() function in pkg:DAAG. I've used this type of display effectively with non-stats people as well as in teaching intro courses in stats. (I would randomize the location of the actual-data panel and not use a different colour. The quest

Re: [R] Normal distribution

2009-10-01 Thread Peter Ehlers
Noela, Package nortest has 5 tests of normality. A word of caution: the wording of your question suggests that you believe that, if the test you use does not reject the normality hypothesis, you then have proof that your data come from a Normal distribution. That's *NOT* true. Normality will sti

Re: [R] launching two RGUI computations from two different Excel workbooks

2009-10-01 Thread Erich Neuwirth
Please send questions like this to the rcom mailing list. You can subscribe at rcom.univie.ac.at. On Sep 28, 2009, at 1:34 PM, sowh...@o2.pl wrote: Hello, I have the following problem: I have excel workbooks connected with R through RExcel package. Data are being loaded from excel, then th

Re: [R] Looking for a better way to document my packages

2009-10-01 Thread Steve Lianoglou
Ah, great! Thanks for the refs, I'll look into them. -steve On Thu, Oct 1, 2009 at 1:12 PM, baptiste auguie wrote: > Hi, > > I know of three options that resemble your query, > > - the roxygen package > > - a ruby script called weeder by Hadley Wikham > > - the inlinedocs package on r-forge > >

Re: [R] Normal distribution

2009-10-01 Thread Richardson, Patrick
I don't disagree. And to that end one could probably look at the skewness and kurtosis values as well. A combination of several techniques would probably be a good idea. Best regards, Patrick -Original Message- From: Steve Lianoglou [mailto:mailinglist.honey...@gmail.com] Sent: Thursd

Re: [R] Normal distribution

2009-10-01 Thread Steve Lianoglou
Hi, I think you can also use a qq-plot to do the same, no? You won't get a statistic score + p.value, but perhaps you're more of a visual person? :-) -steve On Thu, Oct 1, 2009 at 12:56 PM, Richardson, Patrick wrote: > ?shapiro.test > > > -Original Message- > From: r-help-boun...@r-proj

Re: [R] Unable to install lme4

2009-10-01 Thread jamesmcc
This is the first time I've encountered R having difficulty with package and R version compatibility. I cant believe no one has fixed generally so that your version of R can get the latest package appropriate to that version. How nice would that be? :) Anyway, I figured it out for my version (2.8

Re: [R] Looking for a better way to document my packages

2009-10-01 Thread baptiste auguie
Hi, I know of three options that resemble your query, - the roxygen package - a ruby script called weeder by Hadley Wikham - the inlinedocs package on r-forge I only ever used roxygen though, so i can't speak for the relative merits of the others. HTH, baptiste 2009/10/1 Steve Lianoglou :

Re: [R] Using optimize with array variables

2009-10-01 Thread Charles C. Berry
On Thu, 1 Oct 2009, Vik wrote: Hello, I am trying to figure out how to use optimize() with array variables as inputs. I have a for loop in the function definition: SS <- function(int,slo,x,y){ for(i in 1:length(x)) ((int+slo*x[i])-y[i])^2->squares[i] sum(squares)->>sum_squares output_txt = c (

Re: [R] Huge matrix: allocation works but assignment fails

2009-10-01 Thread Ben Bolker
> Remi wrote: > > > (Failed to allocate a vector of size...) > > What can I do? And, maybe even more important, how can one explains such > > a behavior? If your matrices are not sparse, get more memory. If they are, help("sparseMatrix",package=Matrix) ?

[R] Looking for a better way to document my packages

2009-10-01 Thread Steve Lianoglou
Hi all, Trying to do what my subject says. As I'm trying to be better about making packages out of my code, I'd like the packages themselves to be better, which means *.Rd- documenting my code. The thing is, from years of programming other languages prior to landing in the R pond, I've grow

[R] Revolutions blog: September roundup

2009-10-01 Thread David M Smith
I write about R every weekday at the Revolutions blog: http://blog.revolution-computing.com . In case you missed them, here are some articles from last month of particular interest to R users. http://bit.ly/WYAnM shows how to create a URL for a Google Spreadsheet so you can read the data directly

Re: [R] Normal distribution

2009-10-01 Thread Richardson, Patrick
?shapiro.test -Original Message- From: r-help-boun...@r-project.org [mailto:r-help-boun...@r-project.org] On Behalf Of Noela Sánchez Sent: Thursday, October 01, 2009 12:47 PM To: r-help@r-project.org Subject: [R] Normal distribution Hi, I am dealing with how to check in R if some data

Re: [R] Huge matrix: allocation works but assignment fails

2009-10-01 Thread Uwe Ligges
Remi wrote: Hello everyone, I am working with one big matrix: w=matrix(0,18000,18000) on a Linux computer with 16Go of RAM. I can actually create the matrix, and even access elements: w[10,10] 0 but if I try to change one element, it fails: w[10,10]=1 In this case your object is copied an

[R] .Rprofile file

2009-10-01 Thread Data Analytics Corp.
Hi, I want to use the .RProfile to set defaults such as text editor. Is this a file I need to create? Also, where should I put it? I tend to create .RData files for different projects, putting each in a different Windows (Vista) folder. Is one .Rprofile file created that any instance of

[R] Normal distribution

2009-10-01 Thread Noela Sánchez
Hi, I am dealing with how to check in R if some data that I have belongs to a normal distribution or not. I am not interested in obtaining the theoreticall frequencies. I am only interested in determing if (by means of a test as Kolmogorov, or whatever), if my data are normal or not. But I have t

Re: [R] Help me replace a for loop with an "apply" function

2009-10-01 Thread jim holtman
Will this work: > x <- read.table(textConnection(" day user_id + 2008/11/012001 + 2008/11/012002 + 2008/11/012003 + 2008/11/012004 + 2008/11/012005 + 2008/11/022001 + 2008/11/022005 + 2008/11/032001 + 2008/11/032003 + 2008/11/032004 + 2008/11/03

Re: [R] pass "..." to multiple sub-functions

2009-10-01 Thread baptiste auguie
2009/10/1 Peter Ruckdeschel : > > removed <- c("lty",params.fun1) > ## I assume you do not want to pass on argument "lty"... > dots.remaining <- cl[-1] ### remove the function name > dots.remaining <- dots.remaining[! names(dots.remaining) > %in% removed] > > Be

[R] Using optimize with array variables

2009-10-01 Thread Vik
Hello, I am trying to figure out how to use optimize() with array variables as inputs. I have a for loop in the function definition: SS <- function(int,slo,x,y){ for(i in 1:length(x)) ((int+slo*x[i])-y[i])^2->squares[i] sum(squares)->>sum_squares output_txt = c ("The sum of squares is", sum_squar

[R] Can You Recommend Books for Linear Mixed Models in R

2009-10-01 Thread Pat Schmitz
All I have been looking into the books on performing statistics in R, in particular I am interested in General Linear Mixed Models, for Randomized Complete Block Design Experiments The list I have come away with so far is: Mixed Effects Models in S and S-plus by Pinheiro (2002) http://www.amazon

Re: [R] The problem of readLines

2009-10-01 Thread Tammy Ma
I have a more problem: Because there are few files which can't be read into R completely, so on the following subsequence programme, I use write.table, which creates the "NA" files for those incomplete files autimatically. I don't want those NA files. How can I do the following: whenever readLi

Re: [R] cdplot????

2009-10-01 Thread Achim Zeileis
On Thu, 1 Oct 2009, kayj wrote: I am having difficulties interpreting a cdplot, I have a binary variable y that I want to cdplot against a continuous variable x,below is the R command cdplot(y~x, data=mydata) you get a plot with a dark shaded area and a light shaded area. what do these areas m

Re: [R] Unable to install lme4

2009-10-01 Thread jamesmcc
I am baffled by this as well. I'm having the same issue. Using suse linux, with 64 bit R2.8.1. Thanks, james Zege, Andrew wrote: > > I am unable to install package lme4, after several attempts to do so using > various repository URLs. > Just to make sure everything works fine with proxy, co

[R] Help me replace a for loop with an "apply" function

2009-10-01 Thread gd047
...if that is possible My task is to find the longest streak of continuous days a user participated in a game. Instead of writing an sql function, I chose to use the R's rle function, to get the longest streaks and then update my db table with the results. The (attached) dataframe is somethin

Re: [R] Compress (gzip) a pdf device - [ ] Message is from an unknown sender

2009-10-01 Thread Daniele Amberti
system() invokes the OS command specified by command, in the example you gave it means that gzip is installed and (assuming Windows OS) it is in your search path. I'd like to have a solution that do not use external programs. Thanks Daniele -Original Message- From: Ista Zahn [mailto:is

Re: [R] Debug

2009-10-01 Thread Steve Lianoglou
Hi Tammy, On Oct 1, 2009, at 11:04 AM, Tammy Ma wrote: Hi, R-Users,' I have written a programe to process the bunch of files in one folder. But there is a error came out; How can I know which file returns error when being processed? I have tested the first 1-10th files, no any problem. But the

Re: [R] Treating variables as symbols

2009-10-01 Thread Gabor Grothendieck
Read the troubleshooting section on the home page: http://ryacas.googlecode.com Note, in particular, that it currently only works with an older version of the XML package. > library(Ryacas) > packageDescription("XML")$Version [1] "1.96-0" > x <- Sym("x") > Integrate(x*x, x) [1] "Starting Yacas!" e

Re: [R] Compress (gzip) a pdf device - [ ] Message is from an unknown sender

2009-10-01 Thread Ista Zahn
I guess I don't understand what your're trying to do. gzip-ing a file from within R is easy enough: pdf(file="CompressMe.pdf") plot(rnorm(100)) dev.off() system("gzip CompressMe.pdf") I think you want something more complicated, but I'm not sure what. -Ista On Thu, Oct 1, 2009 at 6:41 AM, Danie

Re: [R] Treating variables as symbols

2009-10-01 Thread ZeMajik
Thanks guys, Ryacas is pretty much what I'm looking for!However, I can't seem to get it to work properly. For example: > yacas("Integrate(x) x") Error in parse(text = text, srcfile = NULL) : unexpected numeric constant in ""/" ("^" (x ,2 2" Same thing with expressions such as yacas("x*x") How

Re: [R] Debug

2009-10-01 Thread Tammy Ma
From: metal_lical...@live.com To: r-help@r-project.org Subject: Debug Date: Thu, 1 Oct 2009 15:21:42 +0300 Hi, R-Users,' I have written a programe to process the bunch of files in one folder. But there is a error came out; How can I know which file returns error when being processed? I

Re: [R] Maintaining sort order when transpose

2009-10-01 Thread Kevin Wright
An example would be helpful, but if I understand correctly, can't you do something like TDF=t(DF) TDF=TDF[,rownames(DF)] Kevin Wright On Thu, Oct 1, 2009 at 9:04 AM, Dry, Jonathan R < jonathan@astrazeneca.com> wrote: > Hi all - I have a data frame and have sorted it by a particular column,

[R] cdplot????

2009-10-01 Thread kayj
I am having difficulties interpreting a cdplot, I have a binary variable y that I want to cdplot against a continuous variable x,below is the R command cdplot(y~x, data=mydata) you get a plot with a dark shaded area and a light shaded area. what do these areas mean? and how to interpret the p

Re: [R] typo in install manual

2009-10-01 Thread Duncan Murdoch
On 10/1/2009 5:37 AM, Daniel Dekic wrote: http://cran.r-project.org/doc/manuals/R-admin.pdf page 8 and page 13 testInstallPackages("recommended") -> testInstalledPackages("recommended") Thanks, will fix. Duncan Murdoch __ R-help@r-project.org

Re: [R] GAM question

2009-10-01 Thread joris meys
Hi Daniel, I presume you mean coefficients by values. Try ?gamObject and read the info in the help file. A GAM object (returned by the function gam() ) contains an element coefficients that is easily accessible. That one contains all estimated coefficients, including those for the smooth functions

[R] package:snow, timeOut for makeSOCKcluster()

2009-10-01 Thread Markus Loecher
Dear snow users, is there any way to specify a max time after which makeSOCKcluster() stops trying to create socket connections and gives up/returns ? In my current setup (MAC OSX 10.5.8, R version 2.9) I have to force quit R if the host specified in makeSOCKcluster() either does not exist or does

Re: [R] re ading and analyzing a word document

2009-10-01 Thread spencerg
library(sos) tm <- findFn('text mining') tm This produced 15 matches, which you could also find using "RSiteSearch('text mining', 'function')". The difference is that findFn{sos} displays the results in a table sorted to place the package with the most matches first. In this case, ther

Re: [R] Color of graph

2009-10-01 Thread Jorge Ivan Velez
Hi Ashta, See the "..." in ?abline. HTH, Jorge On Thu, Oct 1, 2009 at 9:57 AM, Ashta <> wrote: > I am trying to plot a line graph for 3 or more regression lines > > abline(m1) > abline(m2) > abline(m3) > > Can I change the color of each line? if so how? > > Thanks in advance > Ashta > >

Re: [R] Color of graph

2009-10-01 Thread Charlie Sharpsteen
On Thu, Oct 1, 2009 at 6:57 AM, Ashta wrote: > I am trying to plot a line graph for 3 or more regression lines > > abline(m1) > abline(m2) > abline(m3) > > Can I change the color of each line? if so how? > > Thanks in advance > Ashta > Try passing the 'col' parameter to abline: abline( m1, col

Re: [R] Color of graph

2009-10-01 Thread smu
abline(m1, col="red") regards, Stefan On Thu, Oct 01, 2009 at 09:57:11AM -0400, Ashta wrote: > I am trying to plot a line graph for 3 or more regression lines > > abline(m1) > abline(m2) > abline(m3) > > Can I change the color of each line? if so how? > > Thanks in advance > Ashta > >

Re: [R] Color of graph

2009-10-01 Thread Henrique Dallazuanna
Try this: abline(m1, col = 'blue') abline(m1, col = 'red') abline(m1, col = 'green') On Thu, Oct 1, 2009 at 10:57 AM, Ashta wrote: > I am trying to plot a line graph for 3 or more regression lines > > abline(m1) > abline(m2) > abline(m3) > > Can I change the color of each line? if so how? > > Th

Re: [R] (no subject)

2009-10-01 Thread Andris Jankevics
Actually that is stated in paper abstract: http://www.krebsregister.saarland.de/improve/periodR_en.html Andris 2009/10/1 "Jens Oehlschlägel" : > Hi, > Does anyone know where the following package is available: > > Holleczek B, Gondos A, Brenner H. > PeriodR - an R package to calculate long term

Re: [R] Getting formatted character from call

2009-10-01 Thread Gabor Grothendieck
Please read the last line to every message to r-help. There is no reproducible code in your post. Anyways, it works for me: > class(call("round", 1.5)) [1] "call" > as.character(call("round", 1.5)) [1] "round" "1.5" > format(call("round", 1.5)) [1] "round(1.5)" On Thu, Oct 1, 2009 at 7:58 AM

Re: [R] (no subject)

2009-10-01 Thread Jorge Ivan Velez
Hi Jens, Take a look at http://www.krebsregister.saarland.de/improve/periodR_en.html HTH, Jorge 2009/10/1 "Jens Oehlschlägel" <> > Hi, > Does anyone know where the following package is available: > > Holleczek B, Gondos A, Brenner H. > PeriodR - an R package to calculate long term survival esti

Re: [R] The problem of readLines

2009-10-01 Thread Henrique Dallazuanna
>From the help page for readLines: " If the final line is incomplete (no final EOL marker) the behaviour depends on whether the connection is blocking or not. For a non-blocking text-mode connection the incomplete line is pushed back, silently. For all other connections the line wi

Re: [R] Evaluating expresssions as parameter values

2009-10-01 Thread Erich Neuwirth
Let us walk through my problem step by step: 1. print(xyplot(yield ~ variety | site,groups=year,data=barley)) 2. print(xyplot(as.formula("yield ~ variety | site"),groups=year,data=barley)) The above two statements work, the next one does not work 3. print(xyplot(as.formula("yield ~ variety |

[R] Color of graph

2009-10-01 Thread Ashta
I am trying to plot a line graph for 3 or more regression lines abline(m1) abline(m2) abline(m3) Can I change the color of each line? if so how? Thanks in advance Ashta [[alternative HTML version deleted]] __ R-help@r-project.org mailing list

[R] Maintaining sort order when transpose

2009-10-01 Thread Dry, Jonathan R
Hi all - I have a data frame and have sorted it by a particular column, with rownames set to a different variable. I wish to transpose this data frame, naming columns by the rowname variable but maintaining the sorted order through to the order of columns in my transposed table, however use of

[R] The problem of readLines

2009-10-01 Thread Tammy Ma
Dear R-users, I use "readLines" to read data, but when processing the large data set, there are few files which can not be readed in: 48: In readLines(name_c[i]) ... : incomplete final line found on 'C:/Documents and Settings/lma/My Documents/habitdata/244052900243997/calllog/calllog_log-20

Re: [R] question

2009-10-01 Thread Martin Morgan
hassan paylakhi wrote: > hi > I am going to crazy.I want to use beadarray package in R, but I cant. > when I want install it, I encounter to this message "Loading required > package: hwriter > Loading required package: sma > Error in library(pkg, character.only = TRUE, logical.return = TRUE, lib.l

[R] Getting formatted character from call

2009-10-01 Thread Iago Mosqueira
Hi, I need to get a character vector from an object of class call. But using as.character() returns something based on the internal structure of the object, and not, as I would like, some akin to the output of show() on a call object. Any idea on how to obtain the same output returned by show? T

[R] (no subject)

2009-10-01 Thread Jens Oehlschlägel
Hi, Does anyone know where the following package is available: Holleczek B, Gondos A, Brenner H. PeriodR - an R package to calculate long term survival estimates using period analysis. Methods of Information in Medicine 2009; 48: 123-128. Thanks Jens Oehlschlägel -- GRATIS für alle GMX-Mitglie

[R] typo in install manual

2009-10-01 Thread Daniel Dekic
http://cran.r-project.org/doc/manuals/R-admin.pdf page 8 and page 13 testInstallPackages("recommended") -> testInstalledPackages("recommended") same problem in .html -- CTM Clinical Trials Management GmbH Mariahilferstraße 47/III/3/5 1060 Vienna, Austria Phone: +43 (0) 1 / 585 80 63 Fax: +4

Re: [R] set package: more information about syntax

2009-10-01 Thread Jarek Jasiewicz
Dear All! I have a few question about proper syntax for fuzzy rules in sets package (there is only little help about it): 1) how to use negation (NOT) operator there is only OR (||) in example it is NOT, !!, !. I also assume that AND is && 2) where it can be set. For example: area %is NO

Re: [R] Treating variables as symbols

2009-10-01 Thread Henrique Dallazuanna
Try this: y <- function(a) substitute(a * x, list(a = a)) On Thu, Oct 1, 2009 at 10:46 AM, ZeMajik wrote: > Hey, > I'm trying to find how to perform operations with a variable treated as a > symbol. > For, an extremely simple, example I want to integrate a*x with respect to x > and I wan

Re: [R] pass "..." to multiple sub-functions

2009-10-01 Thread Peter Ruckdeschel
Dear Baptiste, > I know I have seen this discussed before but I haven't been successful > in searching for "ellipsis", "dots", "..." in the archives. I would > like to filter "..." arguments according to their name, and dispatch > them to two sub-functions, say fun1 and fun2. I looked at lm() but

Re: [R] Treating variables as symbols

2009-10-01 Thread Jorge Ivan Velez
Hi Zemajik, Try this: > y <- function(a) paste(a, '*x', sep="") > y(2) [1] "2*x" Also, take a look at the Ryacas package. HTH, Jorge On Thu, Oct 1, 2009 at 9:46 AM, ZeMajik <> wrote: > Hey, > I'm trying to find how to perform operations with a variable treated as a > symbol. > For, an extreme

[R] Treating variables as symbols

2009-10-01 Thread ZeMajik
Hey, I'm trying to find how to perform operations with a variable treated as a symbol. For, an extremely simple, example I want to integrate a*x with respect to x and I want to find the indefinite integral of this, (a*x^2/2), or the definite integral with some interval for x. Another example of su

[R] Help for 3D Plotting Data on 'Irregular' Grid

2009-10-01 Thread Lorenzo Isella
Dear All, Here is what I am trying to achieve: I would like to plot some data in 3D. Usually, one has a matrix of the kind y_1(x_1) , y_1(x_2).y_1(x_i) y_2(x_1) , y_2(x_2).y_2(x_i) ... y_n(x_1) , y_n(x_2)..y_n(x_i) where e.g. y_2(x_1) is the v

Re: [R] How to use Subpopulation data?

2009-10-01 Thread KABELI MEFANE
Thanks   i was not aware of str, i have a very large code since i am new to r. I forgot to mention that the package is sampling. Actually i have this simulated code:   n <- c(100,400,1000,1500,2000) x <- c(2,3,3,3,5) y <- c(7,7,9,10,10) s <- function(mn, mx, n) {sample(mn:mx, n, replace=TRUE)} r

Re: [R] re ad.delim skips first column (why?)

2009-10-01 Thread HBaize
I can't determine what is going on in you example, but my approach would be to read the text file into a text editor that will display hidden characters (tab, etc.) so you can see the pattern. It could be that there is an extra tab in some locations. You could then use the editor's replace functi

Re: [R] question

2009-10-01 Thread David Winsemius
On Oct 1, 2009, at 4:33 AM, hassan paylakhi wrote: hi I am going to crazy.I want to use beadarray package in R, but I cant. when I want install it, I encounter to this message "Loading required package: hwriter Loading required package: sma Error in library(pkg, character.only = TRUE, logical.r

Re: [R] re ading and analyzing a word document

2009-10-01 Thread David Winsemius
On Oct 1, 2009, at 12:18 AM, cls59 wrote PDXRugger wrote: Considering your instructions: #Define words to find to.find <- c( 'the', 'is', 'are' ,'dr') #Read in the file... file.text <- readLines( 'data/letter.txt' ) #Count number of occurnces of deined word in text line.matches <- unlist( la

Re: [R] creating R roll in Centos OS

2009-10-01 Thread Marc Schwartz
On Oct 1, 2009, at 2:44 AM, Sukhbir Rattan wrote: Hi I have Centos Operating System. I m installing R on it. For this I have to create roll of R. So, how to create the roll of R, regarding this what to be downloaded and from where? Plz help. By Sukhbir Singh Rattan. If by "roll", you

[R] GAM question

2009-10-01 Thread Daniel Rabczenko
Hello evyrone, I would be grateful if you could help me in (I hope) simple problem. I fit a gam model (from mgcv package) with several smooth functions . I don't know how to extract values of just one smooth function. Can you please help me in this? Kind regards, Daniel Rabczenko __

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