[R] Is there any performance difference between subset() and list comprehension?

2009-09-25 Thread You Hyun Jo
Hello, Suppose that you have a data frame 'df' with variables 'V1', 'V2', 'V3', etc. Is there any (performance) difference (except the difference of the return types) between the following two computations? subset(df, V1 > 0, V2) and df$V2[df$V1 > 0] Best Regards, hyunjo [[alternati

Re: [R] Downloading data from from internet

2009-09-25 Thread Bogaso
Thanks Duncan for your input. However I could not install the package "RHTMLForms", it is saying as not not available : > install.packages("RHTMLForms", repos = "http://www.omegahat.org/R";) Warning in install.packages("RHTMLForms", repos = "http://www.omegahat.org/R";) : argument 'lib' is mis

Re: [R] Downloading data from from internet

2009-09-25 Thread Duncan Temple Lang
Bogaso wrote: > Thank you so much for those helps. However I need little more help. In the > site > "http://www.rateinflation.com/consumer-price-index/usa-historical-cpi.php"; > if I scroll below then there is an option "Historical CPI Index For USA" > Next if I click on "Get Data" then another t

Re: [R] basic cubic spline smoothing

2009-09-25 Thread spencerg
The best reference I know for this is something I wrote with Jim Ramsay and Giles Hooker: Functional Data Analysis with R and Matlab (Springer, 2009). Others may have better material. After "install.packages('fda')", I suggest you try "system.file('scripts', package='fda')", as s

Re: [R] Design Package - Penalized Logistic Reg. - Query

2009-09-25 Thread Frank E Harrell Jr
Lars Bishop wrote: Dear R experts, The lrm function in the Design package can perform penalized (Ridge) logistic regression. It is my understanding that the ridge solutions are not equivalent under scaling of the inputs, so one normally standardizes the inputs. Do you know if input standardizati

Re: [R] QQ plotting of various distributions...

2009-09-25 Thread Sunil Suchindran
#same shape some_data <- rgamma(500,shape=6,scale=2) test_data <- rgamma(500,shape=6,scale=2) plot(sort(some_data),sort(test_data)) # You can also use qqplot(some_data,test_data) abline(0,1) # different shape some_data <- rgamma(500,shape=6,scale=2) test_data <- rgamma(500,shape=4,scale=2) plot(

Re: [R] Design Package - Penalized Logistic Reg. - Query

2009-09-25 Thread David Winsemius
On Sep 25, 2009, at 8:33 PM, Lars Bishop wrote: Dear R experts, The lrm function in the Design package can perform penalized (Ridge) logistic regression. It is my understanding that the ridge solutions are not equivalent under scaling of the inputs, so one normally standardizes the inputs.

Re: [R] renaming intercept column when retrieving coeficients from lme using coef function

2009-09-25 Thread jim holtman
Is this what you want: > coef.y (Intercept) 1 0.03109602 2 0.03109602 3 0.03109603 4 0.03109602 > str(coef.y) Classes ‘coef.lme’, ‘ranef.lme’ and 'data.frame': 4 obs. of 1 variable: $ (Intercept): num 0.0311 0.0311 0.0311 0.0311 - attr(*, "level")= int 1 - attr(*, "label")= chr "C

[R] renaming intercept column when retrieving coeficients from lme using coef function

2009-09-25 Thread Eric McKibben
I am still fairly new to R and have a fairly rudimentary question. I am trying to name a vector of coefficients retrieved from a multilevel model using the coef function. I guess the default name is "Intercept" and I cannot figure out how to rename it. I have tried the using the code below

[R] Fourier Transfrom (FFT) Example

2009-09-25 Thread delic
LOL Rolf. Yes I am sure it isn't homework. I am working on an aeroacoustics problem and was trying to figure out how to implement a fourier transform in R. I normally don't work in this field so this stuff was new to me at the time of writing. I have since figured it out. Unfortunately I don't ha

[R] Design Package - Penalized Logistic Reg. - Query

2009-09-25 Thread Lars Bishop
Dear R experts, The lrm function in the Design package can perform penalized (Ridge) logistic regression. It is my understanding that the ridge solutions are not equivalent under scaling of the inputs, so one normally standardizes the inputs. Do you know if input standardization is done internally

Re: [R] Non-parametric test for location with two unpaired sets of data measured on ordinal scale.

2009-09-25 Thread Peter Ehlers
Greg and Marc, Not that it's needed here but, of course, perm.test() in pkg:exactRankTests or oneway_test() in pkg:coin can be used. Using Marc's / Greg's computations, the (two-sided) p-value is sum(abs(perms) >= abs(orig)) / length(perms) [1] 0.01937395 perm.test() and oneway_test give a

Re: [R] evaluate a set of symbols within an IF statement

2009-09-25 Thread cls59
zubin-2 wrote: > > > how do i evaluate this whole list to a single boolean True or False? If > any of these are true the whole statement is True, else False. this > only seems to work for the first ticker, the rest don't perform the > operations within the loop. > > Try %in% tname %in

[R] evaluate a set of symbols within an IF statement

2009-09-25 Thread zubin
Hello, writing some R code to cleanse a data set, if the following set of symbols are identified then perform some actions. trying to write the minimum code to do this. tname = "VIX" checkticker = c("VIX", "TYX", "TNX", "IRX") if (tname == checkticker) { //perform some operations

[R] Starting values in “arima.sim” fu nction

2009-09-25 Thread Lina Rusyte
Hello,   Could someone tell me please how can I find out which starting values has R used for the simulation?   I have AR(1) model:   y(t)=0.2*y(t-1)+0.2*y(t-2) + e(t)     (e(t) is distributed according standard normal distribution)   I need y(0) (or y(t-1), then t=1) values for my follow

[R] help with multi-objective program using lpSolve API

2009-09-25 Thread becky_vcu
Hello, I am struggling with R and have little experience. I need help or suggestions to create a multi-objective program. I have a table as follows http://www.nabble.com/file/p25615459/smallmodel01.xls smallmodel01.xls My constraints are subject to each origin, their corresponding numbers and th

Re: [R] Error in make.names when trying to read.table in if statement

2009-09-25 Thread David Winsemius
On Sep 21, 2009, at 12:19 PM, Cynthia Sadler wrote: Hi, I'm trying to read data from a collection of CSV files for processing and graphing. All of my files begin with "modrate" and end with ".csv". I think I have the regex working but I am stumped at trying to get read.table to work with

Re: [R] Error in make.names when trying to read.table in if statement

2009-09-25 Thread Juliet Hannah
Does this work for you? data_list <- list() filepattern="modrate*" all_files <- list.files(pattern=filepattern) data_list <- lapply(all_files, read.table,header=TRUE,sep=",") __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-h

[R] NLM

2009-09-25 Thread Andrew Wang
I am trying to understand NLM package, so I generated this data set consisting y and x using y= a + b*x +c*x^2 + N(0,10), with a=3.5,b=4.5,c=5.5 Given y and x, I am trying to use NLM to have estimates of parameters a, b and c that minimize the least square error my code looks like f<- fu

Re: [R] Function question

2009-09-25 Thread Henrique Dallazuanna
Try this: foo <- function(expr, x){ eval(substitute(expr)) } foo(x^2, 4) foo(x^3-10, 2) On Fri, Sep 25, 2009 at 6:16 PM, njhuang86 wrote: > > Hi. I was wondering how I can write a function that generates the outcome > values for a user specified equation. For example, function(x^2, 4) w

[R] Function question

2009-09-25 Thread njhuang86
Hi. I was wondering how I can write a function that generates the outcome values for a user specified equation. For example, function(x^2, 4) will return back 16 and function(x^3 - 10, 2) will give back -2... I've been playing around with various lines of code but somehow, I just cannot get R to

[R] How to open only one file in a .gz file?

2009-09-25 Thread Peng Yu
Hi, Suppose that there are multiple files in a .gz file. How to open only one file in it? I don't find such options in the help. Regards, Peng __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting

Re: [R] read.delim very slow in reading files with lots of columns

2009-09-25 Thread Benilton Carvalho
or that! :-D thanks jim. b On Sep 25, 2009, at 3:57 PM, jim holtman wrote: Here is how much time it took to read a file with 10 lines and 700,000 columns per line separated with comma: system.time(input <- scan("/tempxx.txt", what=0, sep=',')) Read 700 items user system elapsed 15.62

[R] On what (shared) machine will R perform faster?

2009-09-25 Thread Dimitri Liakhovitski
Dear R-ers, need your advice on hardware (beware - I am not knowledgeable about that). I find R runs wonderfully on laptops. In my company, we decided to get some kind of a powerful computer (server?) so that we could run big jobs on it (e.g., in R, SAS, SPSS, Excel). We were thinking of somethin

Re: [R] read.delim very slow in reading files with lots of columns

2009-09-25 Thread jim holtman
Here is how much time it took to read a file with 10 lines and 700,000 columns per line separated with comma: > system.time(input <- scan("/tempxx.txt", what=0, sep=',')) Read 700 items user system elapsed 15.620.22 15.84 > object.size(input) 5624 bytes > 'scan' should be suff

Re: [R] Non-parametric test for location with two unpaired sets of data measured on ordinal scale.

2009-09-25 Thread Greg Snow
Thanks Marc, The sampling is so easy that I often forget that we can do the exact permutation test for smaller samples (and I can never remember when small is small enough for this). With the exact permutations we really don't need to do the prop.test or binom.test, I usually do that to get th

Re: [R] How to download from github

2009-09-25 Thread Felipe Carrillo
Henrique: It worked nicely, I am using IE 6.0. Thanks a lot for your help --- On Fri, 9/25/09, Henrique Dallazuanna wrote: > From: Henrique Dallazuanna > Subject: Re: [R] How to download from github > To: "Felipe Carrillo" > Cc: "Charlie Sharpsteen" , r-help@r-project.org > Date: Friday, Sep

Re: [R] read.delim very slow in reading files with lots of columns

2009-09-25 Thread Benilton Carvalho
it may be worth it writing a script to transpose the data (in awk, it takes 10min on my laptop)... then read in the transposed data... > system.time({x <- read.delim("testTransposed.txt", header=F, colClasses="numeric", nrow=70); x <- t(x)}) user system elapsed 4.958 0.412 5.4

Re: [R] Non-parametric test for location with two unpaired sets of data measured on ordinal scale.

2009-09-25 Thread Marc Schwartz
Greg and John, Just to throw it out there, the data sets here are small enough that you co do a fully enumerable permutation test by replacing your replicate() call with: perms <- combn(17, 9, function(x) median(sets[x]) - median(sets[-x])) This is based on an off-list communication that

Re: [R] How to download from github

2009-09-25 Thread Henrique Dallazuanna
What is browser that you are using to download? Try the direct link to download: http://github.com/hadley/ggplot2-bayarea/zipball/0a8bf71dea38cfbf2d928eb713d24dfd928359fc On Fri, Sep 25, 2009 at 3:07 PM, Felipe Carrillo wrote: > That's strange, my pc is not that slow, it has 3 mb of Ram. The

Re: [R] grep or other complex string matching approach to capture necessary information...

2009-09-25 Thread Tony Plate
You could use grep, but it's probably easier to use %in% (see also is.element()), e.g.: house_info[ house_info[,1] %in% c("Water damage", "water pipes damaged", "leaking water"), ] water_evaluation.water_evaluation_selection. house_number 6 water pipes damaged

Re: [R] How to download from github

2009-09-25 Thread Felipe Carrillo
That's strange, my pc is not that slow, it has 3 mb of Ram. The download button doesn't respond either using my computer at work or at home. When you click the download button, Do you get a dialog box prompting you where to save the files? --- On Thu, 9/24/09, Charlie Sharpsteen wrote: > From:

[R] grep or other complex string matching approach to capture necessary information...

2009-09-25 Thread Jason Rupert
Say I have the following data: house_number<-floor(runif(100, 200, 600)) water_evaluation<-c("No water damage", "Water damage", "Water On", "Water off", "water pipes damaged", "leaking water") water_evaluation_selection<-floor(runif(100, 1,6)) house_info<-data.frame(water_evaluation[water_evalua

Re: [R] Reading data

2009-09-25 Thread Henrik Bengtsson
On Fri, Sep 25, 2009 at 10:18 AM, Henrik Bengtsson wrote: > You can use R.utils (on CRAN) to help you figure out why the file is > not found or not readable. > > library("R.utils"); > pathname <- C:/Documents and Settings/ashta/My Documents/R_data/rel.dat"; > pathname <- Arguments$getReadablePath

Re: [R] Reading data

2009-09-25 Thread Henrik Bengtsson
You can use R.utils (on CRAN) to help you figure out why the file is not found or not readable. library("R.utils"); pathname <- C:/Documents and Settings/ashta/My Documents/R_data/rel.dat"; pathname <- Arguments$getReadablePathname(pathname); rel <- read.table(pathname, quote="", header=FALSE, sep

Re: [R] read.delim very slow in reading files with lots of columns

2009-09-25 Thread Charles C. Berry
On Fri, 25 Sep 2009, Ping-Hsun Hsieh wrote: Thanks, Ben. The matrix is a pure numeric matrix (6x70, 31mb). I tried the colClasses='numeric' as well as nrows=7(one of these is header line) on the matrix. Also I tested it with not setting the two options in read.delim() A couple of things

Re: [R] Logistic Regression for Multinomial Data using R

2009-09-25 Thread JLucke
Use polr from the MASS package Nimal Fernando Sent by: r-help-boun...@r-project.org 09/25/2009 12:33 PM To r-help@r-project.org cc Subject Re: [R] Logistic Regression for Multinomial Data using R Hi I want to do logistic regression for multinomial data. How can I do it in R? Thanks

Re: [R] Non-parametric test for location with two unpaired setsof data measured on ordinal scale.

2009-09-25 Thread Greg Snow
Yes, I agree that the median makes the most sense here, but there could be other measures of location that would be of interest (quartiles, some version of the rank sum). Here is some sample code for a permutation test on the medians (there are a couple of packages that will do this as well, bu

[R] SEa nd CI

2009-09-25 Thread Ashta
How can I get the the standard error and confidence interval for the prediction in a multiple regression model using the R command? for a simple regression I used *predict(xc, newdata=data.frame(var1=10.),se=T) where xc is the glm model using binomial and var1 is teh variable. * I can get the u

Re: [R] read.delim very slow in reading files with lots of columns

2009-09-25 Thread Ping-Hsun Hsieh
Thanks, Ben. The matrix is a pure numeric matrix (6x70, 31mb). I tried the colClasses='numeric' as well as nrows=7(one of these is header line) on the matrix. Also I tested it with not setting the two options in read.delim() Here is the time spent on reading the matrix for each test. >syste

Re: [R] Logistic Regression for Multinomial Data using R

2009-09-25 Thread Nimal Fernando
Hi I want to do logistic regression for multinomial data. How can I do it in R? Thanks a lot Nimal Fernando [[alternative HTML version deleted]] __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read

[R] Fitting a asymmetric logistic peak curve

2009-09-25 Thread Marc
UseRs, I am working on the analysis of green area growth in winter wheat and the effects of the amount of water on it. I am trying to fit a asymmetric logistic peak curve to my data as described by Royo et al., Europ. J Agronomy 20 (2004) 419. I want to calculate the maximum green area, maxim

[R] error while plotting

2009-09-25 Thread Nair, Murlidharan T
I am getting the following errors when I am trying to plot the data below. I cannot figure out the error. Error in plot.window(...) : need finite 'xlim' values In addition: Warning messages: 1: In min(x) : no non-missing arguments to min; returning Inf 2: In max(x) : no non-missing arguments to ma

Re: [R] Nested select

2009-09-25 Thread jim holtman
try this: > lines<-"lo ptcl5 ptcl99 variable + 430. 8787a + 430 3422343 m + 430. 89mr + 4314564774a + 431 299 2777m + 4319996 mr + 432

[R] Error with Mixdist in R

2009-09-25 Thread Suchit सुिचतShah
Dear R User, I am an electrical engineering student and have just come across a curve fitting problem. I need to find the constituent Gaussian distribution curves fitting the data attached in Workbook1.txt here. I tried to use Mixdist on R but ran into following problem. Can you suggest me wher

Re: [R] packGrob and dynamic resizing

2009-09-25 Thread hadley wickham
On Fri, Sep 25, 2009 at 7:55 AM, baptiste auguie wrote: > Thank you Paul, I was convinced I tried this option but I obviously didn't! > > In ?packGrob, the user is warned that packing grobs can be slow. In > order to quantify this, I made the following comparison of 3 > functions, > > - table1 use

Re: [R] Reading data

2009-09-25 Thread Michael A. Miller
Sometimes it is easiest to open a file using a file selection widget. I keep this in my .Rprofile: getOpenFile <- function(...){ require(tcltk) return(tclvalue(tkgetOpenFile())) } With this you can find your file and open it with rel <- read.table(getOpenFile(), quote="", header=FALSE, s

Re: [R] multicomp plotting

2009-09-25 Thread Nair, Murlidharan T
I have been trying using the following require(multcomp) tmp <- list(confint=sig.data) attr(tmp, "type") <- "none" old.oma <- par(oma=c(0,1,0,0)) multcomp:::plot.confint.glht(tmp) par(old.oma) I have not been able to get it to work. I would greatly appreciate some suggestion. Thanks .../Murli

Re: [R] summarize-plyr package

2009-09-25 Thread Girish A.R.
Works alright for me: > summarise(baseball,duration = max(year) - min(year),nteams = > length(unique(team))) duration nteams 1 136132 > ddply(baseball, "id", summarise, duration = max(year) - min(year), nteams > = length(unique(team))) id duration nteams 1aaronha01

Re: [R] summarize-plyr package

2009-09-25 Thread baptiste auguie
Hi, it works for me with plyr version 0.1.9. Try upgrading to the latest version, or post your sessionInfo() HTH, baptiste 2009/9/25 Veerappa Chetty : > Hi,I am using the amazing package 'plyr". I have one problem. I would > appreciate help to fix the following error: Thanks. > ___

Re: [R] Spliting columns, strings or reg exp returning substrings

2009-09-25 Thread Henrique Dallazuanna
Try this: DF <- data.frame(A = c('11_12', '22_23', '33_34'), B = sample(3)) #1) Using strsplit transform(DF, C = sapply(strsplit(as.character(DF$A), "_"), '[', 1)) #2) Using substr transform(DF, C = substr(DF$A, 1, 2)) #3) Using regex transform(DF, C = gsub("_.*", "", DF$A))

[R] summarize-plyr package

2009-09-25 Thread Veerappa Chetty
Hi,I am using the amazing package 'plyr". I have one problem. I would appreciate help to fix the following error: Thanks. __ > library(plyr) > data(baseball) > summarise(baseball, + duration = max(year) - min(year), + nteams = length(unique(team))) Error: could not find

Re: [R] Problem on plotting TS using GGPLOT

2009-09-25 Thread Gabor Grothendieck
Once you have reduced it to a data frame as already discussed, its just a ggplot2 problem so you can take it to the ggplot2 group: http://groups.google.com/group/ggplot2 On Fri, Sep 25, 2009 at 9:58 AM, Bogaso wrote: > > Thanks Gabor for your input. However I know there is option in "zoo" to plot

[R] Spliting columns, strings or reg exp returning substrings

2009-09-25 Thread Dry, Jonathan R
Currently as the first column in a data frame I have string values in the format xx_yy - I want to create a new column with just the substring xx (for each row in turn). Three possible ways to do this might be (1) split the string by '_' using strsplit and paste the first of the resulting varia

Re: [R] Problem on plotting TS using GGPLOT

2009-09-25 Thread Bogaso
Thanks Gabor for your input. However I know there is option in "zoo" to plot multiple time series. However I want to go with ggplot2 because it looks better. If anyone point me where is the problem in my ggplot2 code, I would be truly grateful. Thanks, Gabor Grothendieck wrote: > > First get

Re: [R] Problem on plotting TS using GGPLOT

2009-09-25 Thread Gabor Grothendieck
First get the correct representation which here would be a multivariate zoo series with 51 time points and 6 components series and then plot it using zoo's plot function: z <- zoo(matrix(dat, 51), time(dat2)) # all in one panel plot(z, pch = letters[1:6], screen = 1, type = "b", col = 1:6) # or

Re: [R] Problem on plotting TS using GGPLOT

2009-09-25 Thread Bogaso
Let me be more specific. My goal is to plot following multiple TS, using ggplot2 dat1 <- zooreg(matrix(rnorm(306), 51), as.yearmon(as.Date("2000-01-01")), frequency=12) colnames(dat1) <- letters[1:6] dat1 Still I can not get what is problem in my ggplot2 codes. Please give some idea. Best, Bo

Re: [R] Problem on plotting TS using GGPLOT

2009-09-25 Thread Bogaso
Thanks for this reply. Here my goal is to plot multiple time series in the same plotting window. Here y variable has 306 elements, however each value is associated with factor which is represented by "vv" variable. I want to plot total 6 time series, for example 1st 51 values of y, represented b

Re: [R] Does anybody know how to connect to SAS from within R?

2009-09-25 Thread Michael
Yeah, I also would like to know what synergy can I get from combining the power of R and SAS... Maybe there are something that's particularly strong in R and someother that's particularly strong in SAS? Thanks! On Thu, Sep 24, 2009 at 10:26 PM, Indrajit Sengupta wrote: > Here's a good website o

Re: [R] Problem on plotting TS using GGPLOT

2009-09-25 Thread ONKELINX, Thierry
You are mixing data from two datasets with different lengths. Your x variable has 51 elements, while the y variable has 306 elements? What did you expect to happen with that? Use only one dataset within a geom(). Otherwise you are likely the get in troubles. HTH, Thierry ---

Re: [R] if else and loop for code in R

2009-09-25 Thread ONKELINX, Thierry
It looks like you are trying to mimic the SAS data step. In R you can vectorise this. a_data <- read.table("D:/SNP/copy.sas", header=T, sep="\t") a_data$stat <- with(a_data, ifelse(truck < 0, 0, ifelse(cars > 100, 0, cars))) a_data$i <- seq_len(nrow(a_data)) outTable <- a_data[, c("i", "stat", "t

Re: [R] keeping all rows with the same values, and not only unique ones

2009-09-25 Thread Dimitri Liakhovitski
Thank you so much, everyone! Very helpful! Dimitri On Thu, Sep 24, 2009 at 7:46 PM, Moshe Olshansky wrote: > test[which(test[,"total"] %in% needed),] > > --- On Fri, 25/9/09, Dimitri Liakhovitski wrote: > >> From: Dimitri Liakhovitski >> Subject: [R] keeping all rows with the same values, and n

Re: [R] packGrob and dynamic resizing

2009-09-25 Thread baptiste auguie
Thank you Paul, I was convinced I tried this option but I obviously didn't! In ?packGrob, the user is warned that packing grobs can be slow. In order to quantify this, I made the following comparison of 3 functions, - table1 uses frameGrob and packGrob - table2 uses frameGrob but calculates the s

Re: [R] Java to R interface.

2009-09-25 Thread Cedrick Johnson
You could also try Rserve http://www.rforge.net/Rserve/ -cj vikrant S wrote: I want to call R functions from Java. I read a couple of forums that said to install package rJava in R. However I am not able to install rJava package in linux Ubuntu.I tried with two commands. One is install.packag

Re: [R] Binomial

2009-09-25 Thread Marc Schwartz
On Sep 25, 2009, at 6:29 AM, Ashta wrote: Dear R-users, Suppose I have the following sample of data, 0 1 2 4 3 1 2 1 3 1 1 3 3 4 1 0 1 2 1 2 1 4 1 4 2 1 2 2 1 1 The first variable is the response variable where 0 is defective and 1 normal. The other four f

Re: [R] Bug

2009-09-25 Thread dhansekaran
Thank you very much for help. Here is my values of Sale Date >sample test[1:100, 76] 11989-08-01 21900-01-01 32003-11-18 42003-05-30 52005-08-18 61990-04-01 71989-01-01 81900-01-01 91996-03-12 10 1900-01-01 11

Re: [R] Data import from .csv-file with numeric header

2009-09-25 Thread Duncan Murdoch
Tobias Ruff wrote: Hello everybody out there using R, How can I import data with a numeric header from a .csv-file? My file example.csv has the following content (a duplicate measurement of potentials for three different currents): 1; 2; 6 1.0; 2.1; 5.9 1.1; 2.0; 6.0 I try to import the data b

Re: [R] Data import from .csv-file with numeric header

2009-09-25 Thread Henrique Dallazuanna
Try this: measurement <- read.table("example.csv", sep = ";", header = TRUE, check.names = FALSE) plot(mean(measurement), names(measurement), xaxt = 'n') axis(1, names(measurement)) On Fri, Sep 25, 2009 at 3:53 AM, Tobias Ruff wrote: > Hello everybody out

[R] if else and loop for code in R

2009-09-25 Thread Minh Duy Mai
I am using if else and loop to sortout the data set that is the values less than o or more than 100 will be chosen.I could not get outTable with loop. Please help me to correct the code: I USED: # Read a_data <- read.table("D:/SNP/copy.sas", header=T, sep="\t") tr <- a_data$truck ca <- a_data

[R] Nested select

2009-09-25 Thread premmad
my data : library(doBy) lines<-"lo ptcl5 ptcl99 variable 430. 8787a 430 3422343 m 430. 89mr 4314564774a 431 299 2777m 4319996 mr 432

Re: [R] re peated measures

2009-09-25 Thread pompon
Hi, Thank you. It was that. Julien. Tal Galili wrote: > > check for missing values. > Tal > > > > On Wed, Sep 23, 2009 at 3:27 PM, pompon wrote: > >> >> Hi, >> >> I am performing a repeated measures 2-way ANOVA to assess the influence >> of >> plant and leaf on aphid fecundity. Fecund

[R] Java to R interface.

2009-09-25 Thread vikrant S
I want to call R functions from Java. I read a couple of forums that said to install package rJava in R. However I am not able to install rJava package in linux Ubuntu.I tried with two commands. One is install.packages("rJava") and another I downloaded the rJava_0.7-0.tar.gz file from R site. and

[R] Data import from .csv-file with numeric header

2009-09-25 Thread Tobias Ruff
Hello everybody out there using R, How can I import data with a numeric header from a .csv-file? My file example.csv has the following content (a duplicate measurement of potentials for three different currents): 1; 2; 6 1.0; 2.1; 5.9 1.1; 2.0; 6.0 I try to import the data by using: >measurement

[R] Problem on plotting TS using GGPLOT

2009-09-25 Thread bogaso.christofer
Hi, I have following codes : library(zoo); library(ggplot2); library(plyr) dat <- rnorm(306); vv <- letters[1:6]; dat1 <- data.frame(dat, vv) dat2 = zooreg(rnorm(51), as.yearmon(as.Date("2000-01-01")), frequency=12) ggplot(dat1) + geom_line(aes(y=dat, x=index(dat2),

Re: [R] synchronisation of time series data using interpolation

2009-09-25 Thread Gabor Grothendieck
Create the series as zoo series from the data, and then merge them and fill in NAs with interpolated values using na.approx. Finally use window to pick off the times that were in z1 and plot. See the three vignettes that come with zoo and for time and dates see the article in R News 4/1 and its r

[R] R CMD INSTALL --build: Folders /inst and /etc not in zip-file and WindowsXP locks /library/[package]/etc/

2009-09-25 Thread Tobias Schoch
Dear R users, My set-up: OS=Windows XP, R-2.9.2, Rtools210 I faced the follwing problem with the package compilation: There is no "/inst" or "/etc" subdirectory in the package-zip-file. And the content of the "/etc" subdirectory is lost, too. I tried a simplified "test" package. The "test" packag

[R] Binomial

2009-09-25 Thread Ashta
Dear R-users, Suppose I have the following sample of data, 0 1 2 4 3 1 2 1 3 1 1 3 3 4 1 0 1 2 1 2 1 4 1 4 2 1 2 2 1 1 The first variable is the response variable where 0 is defective and 1 normal. The other four factors( x1,x2,x3,x4) that influence the

[R] variation in one variable

2009-09-25 Thread Samuel Okoye
Hello, Could you please tell me wether there is any function in R that tell me how many subgroup in one variable I have? So for example if my data are x <- c(rnorm(50,50,3),rgamma(50,2,1),runif(50,0,1)) I want to know how many group I have? Many thank in advance, Samuel --- On Thu, 9/17/09, S

Re: [R] problem on SUSE Linux Enterprise Server 10 (ia64)

2009-09-25 Thread Paul Hiemstra
Hi, You need to install the headers/libs for readline. Probably using your package manager, look for something like readline-devel. cheers, Paul Yuan Zhidong wrote: Dear Sir, When I install R on SUSE Linux Enterprise Server 10 (ia64) (Linux a450 2.6.16.21-0.8-default #1 SMP Mon Jul 3 18:25:3

Re: [R] Downloading data from from internet

2009-09-25 Thread Bogaso
Thank you so much for those helps. However I need little more help. In the site "http://www.rateinflation.com/consumer-price-index/usa-historical-cpi.php"; if I scroll below then there is an option "Historical CPI Index For USA" Next if I click on "Get Data" then another table pops-up, however wit

[R] R 2.10.0 is scheduled for October 26

2009-09-25 Thread Peter Dalgaard
This is to announce that we plan to release R version 2.10.0 on Monday, October 26, 2009. Release procedures start today. The detailed schedule can be found on http://developer.r-project.org The source tarballs will be made available daily (barring build troubles), starting September 28, and the

Re: [R] basic cubic spline smoothing

2009-09-25 Thread hm567
hm567 wrote: > > I am unsure about spar being the smoothness parameter, about where to put > the standard errors of the points, and about the return of the > smooth.spline function: > Smoothing Parameter spar= 0.5 lambda= 0.006833112 > > best regards, > Basically, the implementation base

[R] differing behaviour between xts (0.6-7) and zoo (1.5-8)

2009-09-25 Thread Murali.MENON
Folks, I have some weekly dataseries that I convert to monthly xts (with yearmon indices), and obtain the two following extracts: > str(sig) An 'xts' object from Apr 1998 to Sep 1998 containing: Data: num [1:6, 1] 0.0083 0.2799 -0.2524 -0.0119 0.18 ... - attr(*, "dimnames")=List of 2 ..$ :

Re: [R] superimposing xyplots on same scale

2009-09-25 Thread baptiste auguie
2009/9/25 Felix Andrews : > Sorry, doubleYScale is not appropriate, since you specifically want a > common y scale. > > I think Baptiste was suggesting to use layer(), rather than > as.layer(): Truth be told, I wasn't quite sure what the initial request meant. I took it quite literally, as "superi

Re: [R] graphics mailing list?

2009-09-25 Thread baptiste auguie
OK, it makes sense. Let's try that. Best, baptiste 2009/9/25 Paul Murrell : > Hi > > > baptiste.auguie wrote: >> >> (Sorry about the double post earlier, googlemail is having hiccups today) >> >> 2009/9/24 Romain Francois : >>> >>> Why just grid ? why not a list for all kind of graphics ? >> >>

Re: [R] subsetting from a vector or matrix

2009-09-25 Thread andrew
both the following will probably do the trick. ?subset ?"[" Basically on the second one, you want to come down to something that looks like x[L] where x is a matrix/vector, and L is a logical vector that has the same dimension as x, but is TRUE on the values of x that you want to select. for i