Re: [R] matrix multiplication question

2008-07-17 Thread Tsjerk Wassenaar
Hi Murali, So, the solution to your problem will be to explicitly convert your matrix to a numeric matrix. Maybe matrix (?matrix) will do, or you'll also have to use as.numeric (?as.numeric). The strings on the left seem to me to be the row labels, right..?, not elements in the matrix/table. As a

Re: [R] matrix multiplication question

2008-07-17 Thread Duncan Murdoch
On 17/07/2008 9:47 PM, Murali K wrote: Hello, I am a newcomer to R and therefore apologize for posting such a basic question. I am trying to multiply 2 matrices t(X1)%*%X1, where t(X1) is: It's hard to say for sure, but it looks as though X1 really isn't a numeric matrix. The "ones" a

[R] matrix multiplication question

2008-07-17 Thread Murali K
Hello, I am a newcomer to R and therefore apologize for posting such a basic question. I am trying to multiply 2 matrices t(X1)%*%X1, where t(X1) is: 1 2 3 4 5 8 12 13 20 24 26 27 31 33 34 36 37 40 41 42 45 46 47 48 49 ones 1 1 1 1 1 1 1 1 1 11 1 1 1

Re: [R] size and coding error in plot ?

2008-07-17 Thread Marc Schwartz
on 07/17/2008 08:44 PM [EMAIL PROTECTED] wrote: Hello R users: I was trying to draw a boxplot?using 2 variables (rain and wind). Both of them has length 25056. So dummy is a matrix with dimension 2 x 25056. First I tried to draw a full boxplot using the following code?and gave an error boxplot

Re: [R] size and coding error in plot ?

2008-07-17 Thread hadley wickham
On Fri, Jul 18, 2008 at 9:44 AM, <[EMAIL PROTECTED]> wrote: > Hello R users: > > I was trying to draw a boxplot?using 2 variables (rain and wind). Both of > them has length 25056. So dummy is a matrix with dimension 2 x 25056. First I > tried to draw a full boxplot using the following code?and g

Re: [R] Function to create variables with prefix

2008-07-17 Thread jim holtman
What you should be doing is to return a value from the function and you can then assign this to an object of your choice: sizeattributes <- c("length", "width", "height") blue <- myfunction(bluefrenchwidgets, sizeattributes, "norm_") red <- myfunction(redcanadianwidgets, sizeattributes, "norm_")

Re: [R] size and coding error in plot ?

2008-07-17 Thread shetumi
Sorry, I forgot to mention that I also tried??? memory.size(T)? and then tried to use those commands. Nothing got changed.. Can you please tell me where is the problem in?my code and how to fix it ? -Original Message- From: [EMAIL PROTECTED] To: r-help@r-project.org Sent: Thu, 17 Jul 20

[R] size and coding error in plot ?

2008-07-17 Thread shetumi
Hello R users: I was trying to draw a boxplot?using 2 variables (rain and wind). Both of them has length 25056. So dummy is a matrix with dimension 2 x 25056. First I tried to draw a full boxplot using the following code?and gave an error > boxplot(dummy$Rain~dummy$Wind) Error: cannot allocat

Re: [R] Matching Up Values

2008-07-17 Thread hadley wickham
On Fri, Jul 18, 2008 at 5:09 AM, Rolf Turner <[EMAIL PROTECTED]> wrote: > > On 18/07/2008, at 8:42 AM, Steve Murray wrote: > > > >> So what I'm looking to do is, 'pad out' the shorter file, by adding in the >> rows with those that are 'missing' from the longer file (ie. if a particular >> c

Re: [R] smooth.spline

2008-07-17 Thread Spencer Graves
I believe that a short answer to your question is that the "smooth" is a linear combination of B-spline basis functions, and the coefficients are the weights assigned to the different B-splines in that basis. Before offering a much longer answer, I would want to know what problem yo

[R] How to convert/map jacktest results to dataframe or file

2008-07-17 Thread Jason Lee
Hi, I have issue a jacktest command and it produces me a list of numbers. I would like to map them to a dataframe so I could save it to a file. I tried to convert the mvr.obj to vector but when I check the class, it is still jacktest. converted<-as.vector(mvr.obj) Or any otehr way to map this t

Re: [R] Function to create variables with prefix

2008-07-17 Thread Moira Burke
Thanks to everyone who replied. I really appreciate your help, and have been trying variations on the solutions you've offered. Unfortunately, none do quite what I'm hoping to do. Uwe's suggestion seems to be the closest (I think), but the new variables created within the function didn't exist o

Re: [R] Problem with TLC/TK on Ubuntu

2008-07-17 Thread Davide Massidda
>Davide Massidda wrote: > Dear all, >I have installed R on Linux/Ubuntu 8.04. > Erik Iverson wrote: > But you don't say how. Are you compiling R yourself or installing the Ubuntu package from CRAN? I comple R using R-2.7.1.tar.gz, I don't use the package from CRAN. [[alternative HTML ve

Re: [R] Problem with TLC/TK on Ubuntu

2008-07-17 Thread Erik Iverson
Davide Massidda wrote: Dear all, I have installed R on Linux/Ubuntu 8.04. But you don't say how. Are you compiling R yourself or installing the Ubuntu package from CRAN? __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/

Re: [R] Problem with TLC/TK on Ubuntu

2008-07-17 Thread Dirk Eddelbuettel
On Fri, Jul 18, 2008 at 01:09:25AM +0200, Davide Massidda wrote: > Dear all, > I have installed R on Linux/Ubuntu 8.04. When I try to load the tcltk > package, I get the response: > > > library(tcltk) > Error in firstlib(which.lib.loc, package) : > Tcl/Tk support is not available on this system

Re: [R] combining lists of pairs

2008-07-17 Thread Charles C. Berry
On Thu, 17 Jul 2008, [EMAIL PROTECTED] wrote: Hi everybody, This has been causing me some trouble: I want to combine several lists of pairs into a single?vector but keep the pairs together. The lists are of the form: (1)?x1 x2 x3... N? (2) y1 y2 y3..? N I would like to keep it this way, simp

[R] Problem with TLC/TK on Ubuntu

2008-07-17 Thread Davide Massidda
Dear all, I have installed R on Linux/Ubuntu 8.04. When I try to load the tcltk package, I get the response: > library(tcltk) Error in firstlib(which.lib.loc, package) : Tcl/Tk support is not available on this system Error in library(tcltk) : . First.lib failed for 'tcltk' In order to solve thi

Re: [R] REvolution computing

2008-07-17 Thread David Henderson
Mi Mariana: on 07/17/2008 12:40 PM Mariana Carla Gambarotta wrote: Hi, everybody. Sorry to bring up the subject again but I have visited the revolution computing web page, but its not clear when or what will be the new release be. Does anybody have information about that?. Does anybody know if

[R] combining lists of pairs

2008-07-17 Thread olvrmrs
Hi everybody, This has been causing me some trouble: I want to combine several lists of pairs into a single?vector but keep the pairs together. The lists are of the form: (1)?x1 x2 x3... N? (2) y1 y2 y3..? N I would like to keep it this way, simply appending one list to another, e.g. (1) x1i x

Re: [R] Newbie's question about lm

2008-07-17 Thread Mark Difford
Hi Ptit, >> I would like to fit data with the following formula : >> y=V*(1+alpha*(x-25)) >> where y and x are my data, V is a constant and alpha is the slope I'm >> looking for. Priorities first: lm() or ordinary least-square regression is a basically a method for finding the best-fitting strai

Re: [R] Matching Up Values

2008-07-17 Thread Rolf Turner
On 18/07/2008, at 8:42 AM, Steve Murray wrote: So what I'm looking to do is, 'pad out' the shorter file, by adding in the rows with those that are 'missing' from the longer file (ie. if a particular coordinate isn't present in the shorter file but is in the 'longer/master' file),

Re: [R] Help with data layout - Thanks

2008-07-17 Thread Iain Gallagher
Thanks for all the excellent replies. Iain [[alternative HTML version deleted]] __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and p

[R] nested calls, variable scope

2008-07-17 Thread Jacob Wegelin
Below is an example of a problem I encounter repeatedly when I write functions. A call works at the command line, but it does not work inside a function, even when I have made sure that all required variables are available within the function. The only way I know to solve it is to make the require

[R] smooth.spline

2008-07-17 Thread rkevinburton
I like what smooth.spline does but I am unclear on the output. I can see from the documentation that there are fit.coef but I am unclear what those coeficients are applied to.With spline I understand the "noraml" coefficients applied to a cubic polynomial. But these coefficients I am not sure ho

Re: [R] Matching Up Values

2008-07-17 Thread Peter Alspach
Steve ?merge and the all collection of arguments Peter Alspach > -Original Message- > From: [EMAIL PROTECTED] > [mailto:[EMAIL PROTECTED] On Behalf Of Steve Murray > Sent: Friday, 18 July 2008 8:43 a.m. > To: r-help@r-project.org > Subject: [R] Matching Up Values > > > Dear all, >

[R] nested calls, variable scope

2008-07-17 Thread Jacob Wegelin
Below is an example of a problem I encounter repeatedly when I write functions. A call works at the command line, but it does not work inside a function, even when I have made sure that all required variables are available within the function. The only way I know to solve it is to make the re

[R] Matching Up Values

2008-07-17 Thread Steve Murray
Dear all, I have two files, both of similar formats. In column 1 are Latitude values (real numbers, e.g. -179.25), column 2 has Longitude values (also real numbers) and in one of the files, column 3 has Population Density values (integers); there is no column 3 in the other file. However, the

Re: [R] Sampling distribution (PDF & CDF) of correlation

2008-07-17 Thread Charles C. Berry
On Thu, 17 Jul 2008, Mike Lawrence wrote: Hi all, I'm looking for an analytic method to obtain the PDF & CDF of the sampling distribution of a given correlation (rho) at a given sample size (N). See Fisher (1915) Biometrika. It is non-central t up to a monotone transformation. Finding th

Re: [R] ubuntu and rgl package vs suse ?? static plots

2008-07-17 Thread H. Paul Benton
This is really odd. Because in Suse I could have compiz on and still have rotating rgl plots. I did have kde in suse and now gnome in ubuntu but I wouldn't have thought that would make the difference. It must be a ubuntu thing. Very odd. Paul Duncan Murdoch wrote: On 7/17/2008 2:54 PM, H. Pa

Re: [R] ubuntu and rgl package vs suse ?? static plots

2008-07-17 Thread Duncan Murdoch
On 7/17/2008 2:54 PM, H. Paul Benton wrote: Hello all, I've switched over my OS to ubuntu from Suse 10.3. In suse I was able to load up the 'rgl' library in R and then move my plots around after I had plotted them. Which I assumed was part of the openGL. However, since switching to ubuntu I a

[R] ubuntu and rgl package vs suse ?? static plots

2008-07-17 Thread H. Paul Benton
Hello all, I've switched over my OS to ubuntu from Suse 10.3. In suse I was able to load up the 'rgl' library in R and then move my plots around after I had plotted them. Which I assumed was part of the openGL. However, since switching to ubuntu I am unable to 'move' my plot around, they are j

Re: [R] Display variables when running a script

2008-07-17 Thread Stephan Kolassa
?print ?cat HTH Stephan [EMAIL PROTECTED] schrieb: Hi, I know this must be a stupid question, and sorry in advance for being such a noob. But, is there way to get R to display only certain variables when running a script. I know if you want to see the value of a variable when using the interfa

Re: [R] REvolution computing

2008-07-17 Thread Marc Schwartz
on 07/17/2008 12:40 PM Mariana Carla Gambarotta wrote: Hi, everybody. Sorry to bring up the subject again but I have visited the revolution computing web page, but its not clear when or what will be the new release be. Does anybody have information about that?. Does anybody know if the version t

Re: [R] Display variables when running a script

2008-07-17 Thread Erik Iverson
Depending on your motivation here, you may want to search for 'debugging in R' or something to that effect to look at the various options available. I like the debug package available on CRAN. Also see ?browser and ?trace if you want to debug a function. [EMAIL PROTECTED] wrote: Hi, I kn

Re: [R] Display variables when running a script

2008-07-17 Thread jim holtman
?print ?cat On Thu, Jul 17, 2008 at 1:47 PM, <[EMAIL PROTECTED]> wrote: > Hi, > > I know this must be a stupid question, and sorry in advance for being such a > noob. But, is there way to get R to display only certain variables when > running > a script. I know if you want to see the value of a

Re: [R] Comparing differences in AUC from 2 different models

2008-07-17 Thread Frank E Harrell Jr
Monica Pisica wrote: Hi, I would like to compare differences in AUC from 2 different models, glm and gam for predicting presence / absence. I know that in theory the model with a higher AUC is better, but what I am interested in is if statistically the increase in AUC from the glm model to th

[R] Display variables when running a script

2008-07-17 Thread naw3
Hi, I know this must be a stupid question, and sorry in advance for being such a noob. But, is there way to get R to display only certain variables when running a script. I know if you want to see the value of a variable when using the interface, you just type it in and hit enter, but is there a c

[R] REvolution computing

2008-07-17 Thread Mariana Carla Gambarotta
Hi, everybody. Sorry to bring up the subject again but I have visited the revolution computing web page, but its not clear when or what will be the new release be. Does anybody have information about that?. Does anybody know if the version that will be released will be validated?. I have been

Re: [R] Labelling curves on graphs

2008-07-17 Thread Ted Harding
On 17-Jul-08 02:32:41, Frank E Harrell Jr wrote: > Barry Rowlingson wrote: >> 2008/7/16 Ted Harding <[EMAIL PROTECTED]>: >> >>> Hi Folks, >>> I'd be grateful for good suggestions about the following. >>> >>> I'm plotting a family of (X,Y) curves (for different levels >>> of another variable, Z): s

Re: [R] Hiding information about functions in newly developed packages

2008-07-17 Thread Bert Gunter
You seems to be confused here. A function is "invoked" -- i.e. "called" -- via the expression fun(...) ## *Note the parentheses.* The function body is *not* printed. The expression fun ## note: no parentheses is not a call to the function. Rather, it is by default a call to the **print** m

Re: [R] Hiding information about functions in newly developed packages

2008-07-17 Thread Peter Dalgaard
Tudor Bodea wrote: Dear UseRs: I intend to write a package to handle the basic operations a revenue management analyst has to deal with on a regular basis (e.g., demand untruncation, capacity allocation, pricing decisions, etc.). Following the directions posted by Peter Rossi (Making R Packages

Re: [R] help with data layout

2008-07-17 Thread jim holtman
Does this do at least the means for you: > x <- read.csv(textConnection("Col1 , Col2 + A, 3 + , 2 + , 3 + B, 4 + , 5 + , 4 + C , 1 + , 4 + , 3"), strip.white=TRUE) > x Col1 Col2 1A3 2 2 3 3 4

Re: [R] Hiding information about functions in newly developed packages

2008-07-17 Thread Marc Schwartz
on 07/17/2008 10:57 AM Tudor Bodea wrote: Dear UseRs: I intend to write a package to handle the basic operations a revenue management analyst has to deal with on a regular basis (e.g., demand untruncation, capacity allocation, pricing decisions, etc.). Following the directions posted by Peter R

Re: [R] negative P-values with shapiro.test

2008-07-17 Thread Martin Maechler
> "MM" == Martin Maechler <[EMAIL PROTECTED]> > on Wed, 16 Jul 2008 18:02:47 +0200 writes: > "MC" == Mark Cowley <[EMAIL PROTECTED]> > on Wed, 16 Jul 2008 15:32:30 +1000 writes: MC> Dear list, MC> I am analysing a set of quantitative proteomics data MC> from 1

Re: [R] help with data layout

2008-07-17 Thread Stephen Tucker
Hi, hope this will help: txt <- "Col1,Col2 A,3 , 2 ,3 B,4 , 5 , 4 C,1 , 4 , 3" ## read data dat <- read.csv(textConnection(txt),na.string="") ## fill in empty cells with correct category dat$Col1[] <- Reduce(function

Re: [R] help with data layout

2008-07-17 Thread Mike Lawrence
Nice tip on filling missing col1 values. I've always just done the filling in excel by hand. I then use that same hand to smack the person that gave me data in excel format :Op On 17-Jul-08, at 1:19 PM, Erik Iverson wrote: Iain Gallagher wrote: Hello list I have been given some Excel sheet

Re: [R] help with data layout

2008-07-17 Thread Henrique Dallazuanna
Try this: #x <- read.csv('your_file.csv') x$Col1 <- rep(as.character(x$Col1[x$Col1!="" ]), each = unique(diff(which(x$Col1 != "" with(x, sapply(c(sd, mean), function(x)tapply(Col2, Col1, x))) On Thu, Jul 17, 2008 at 12:50 PM, Iain Gallagher <[EMAIL PROTECTED]> wrote: > Hello li

Re: [R] help with data layout

2008-07-17 Thread Erik Iverson
Iain Gallagher wrote: Hello list I have been given some Excel sheets with data laid like this: Col1Col2 A 3 2 3 B 4 5 4 C 1 4 3 I was hoping to import this into R as a csv and then get the mean and SD for each letter in column 1. Could someone give me some guidance

[R] Can mvtnorm calculate a sequence of probabilities?

2008-07-17 Thread di jianing
Hi all, I know pnorm() is able to calculate a sequence of probabilities by providing a vector of means, and a single number for location and standard deviation. For example, pnorm(0.5,c(0.5,2),1) will produce [1] 0.500 0.0668072. However, I wonder if its multivariate counterpart mvtnorm can do

Re: [R] Sampling distribution (PDF & CDF) of correlation

2008-07-17 Thread Maria Rizzo
See Chapter 22 in N.L. Johnson, S. Kotz, and N. Balakrishnan, "Continuous Univariate Distributions", Volume 2, Second Edition, 1995. Maria On Thu, Jul 17, 2008 at 11:29 AM, Mike Lawrence <[EMAIL PROTECTED]> wrote: > Hi all, > > I'm looking for an analytic method to obtain the PDF & CDF of the s

[R] Hiding information about functions in newly developed packages

2008-07-17 Thread Tudor Bodea
Dear UseRs: I intend to write a package to handle the basic operations a revenue management analyst has to deal with on a regular basis (e.g., demand untruncation, capacity allocation, pricing decisions, etc.). Following the directions posted by Peter Rossi (Making R Packages under Windows: A Tut

[R] Newbie's question about lm

2008-07-17 Thread Ptit_Bleu
Hello, I would like to fit data with the following formula : y=V*(1+alpha*(x-25)) where y and x are my data, V is a constant and alpha is the slope I'm looking for. How to translate this into R-language ? At the moment, I only know : lm(y ~ x) Sorry for such a basic question. I thought I could

[R] keeping seperate row.names

2008-07-17 Thread Patrick Richardson
I have microarray data with gene names in the first column, gene id in the second and the expression data in the remaining columns. When trying use read.table I get the error, . . . "more columns than column names". Is there any way to keep both columns of "names" without having to discard one.

[R] help with data layout

2008-07-17 Thread Iain Gallagher
Hello list I have been given some Excel sheets with data laid like this: Col1Col2 A 3 2 3 B 4 5 4 C 1 4 3 I was hoping to import this into R as a csv and then get the mean and SD for each letter in

Re: [R] Colours in R

2008-07-17 Thread Earl F. Glynn
"Leandro Marino" <[EMAIL PROTECTED]> wrote in message news:[EMAIL PROTECTED] But this pearson want to specify the colours. This person want me to create an pallete of colours like that: Name of color - Code - Colour White - 0xFF - color white (like an box with this color) This page shows

[R] Sampling distribution (PDF & CDF) of correlation

2008-07-17 Thread Mike Lawrence
Hi all, I'm looking for an analytic method to obtain the PDF & CDF of the sampling distribution of a given correlation (rho) at a given sample size (N). I've attached code describing a monte carlo method of achieving this, and while it is relatively fast, an analytic solution would obvio

Re: [R] enscript states file for R scripts?

2008-07-17 Thread Peter Dalgaard
Dirk Eddelbuettel wrote: On 15 July 2008 at 17:23, hadley wickham wrote: | An alternative to enscript is highlight, | http://www.andre-simon.de/doku/highlight/en/highlight.html, which does | come with R highlighting built in. Another alternative is GNU a2ps which has definitions for R source, do

Re: [R] Histogram with two colors depending on condition

2008-07-17 Thread Greg Snow
Here are a couple of ways: > dat<-rnorm(1000,1,2) > hist(dat, col='red') > tmp <- par('usr') > clip(0,tmp[2],tmp[3],tmp[4]) > hist(dat, col='green', add=TRUE) > > # or > > library(TeachingDemos) > hist(dat, col='red') > clipplot( hist(dat, col='green', add=TRUE), c(0, par('usr')[2]) ) > Hope this

[R] Odp: Graph

2008-07-17 Thread Petr PIKAL
Hi [EMAIL PROTECTED] napsal dne 17.07.2008 16:14:33: > Hi, > I need to draw a barplot with the value numbers on the bars. In > particular I would draw a barplot(beside=T) with on the bars the value > numbers and in the middle of the bars a parcentage. > > -- >

[R] Odp: Colours in R

2008-07-17 Thread Petr PIKAL
Hi Maybe there is some neat function for it but apply(data.frame(t(col2rgb(colours()[1:10]))),1,function(x) paste(as.character.hexmode(x),collapse="")) gives you hex values for colours specified. Then you can use colours()[1:10] to get names (or you can invent your own) and you can print real

Re: [R] Colours in R

2008-07-17 Thread Duncan Murdoch
On 7/17/2008 10:25 AM, Leandro Marino wrote: Hi list, I will help an person that will use some graphics of R in internet. But this pearson want to specify the colours. This person want me to create an pallete of colours like that: Name of color - Code - Colour White - 0xFF - col

Re: [R] Problem with mpi.close.Rslaves()

2008-07-17 Thread Lyman, Mark
I have found a solution that appears to work. Instead of calling mpi.close.Rslaves() to shut down the slaves, I use mpi.bcast.cmd(q("no")) and rely on the scheduler/mpirun to shut down anything else. However, because I really don't know what I am doing, I would appreciate it if anyone who sees some

[R] Graph

2008-07-17 Thread Marco Chiapello
Hi, I need to draw a barplot with the value numbers on the bars. In particular I would draw a barplot(beside=T) with on the bars the value numbers and in the middle of the bars a parcentage. -- | 12.34% | 150

[R] histogram plot default

2008-07-17 Thread Xin
Dear All: I am trying to plot a series of data using histogram plot. But I want to change the default of setting for histogram plot. For example, I want to set frequency plot starting with zero. Many Thanks Xin [[alternative HTML version deleted]] _

[R] RES: Colours in R

2008-07-17 Thread Leandro Marino
I know that! But i will select about 10 colurs and show him But he needs in that format! thanks@ -Mensagem original- De: Duncan Murdoch [mailto:[EMAIL PROTECTED] Enviada em: quinta-feira, 17 de julho de 2008 11:32 Para: Leandro Marino Cc: [EMAIL PROTECTED] Org Assunto: Re: [R] Colo

[R] errors using step function

2008-07-17 Thread silvia narduzzi
Dear R users, I have had a problem using the "step" function for the selection of the variables from a gamma model with log link function. CODE: step.glm.gam1.infroma <- step(glm.gam1.infroma, direction = "backward", k=2) ERROR MESSAGE: Error in glm.fit(x[, jj, drop = FALSE], y, wt, offset = obj

[R] Colours in R

2008-07-17 Thread Leandro Marino
Hi list, I will help an person that will use some graphics of R in internet. But this pearson want to specify the colours. This person want me to create an pallete of colours like that: Name of color - Code - Colour White - 0xFF - color white (like an box with this color) I know

[R] Comparing differences in AUC from 2 different models

2008-07-17 Thread Monica Pisica
Hi, I would like to compare differences in AUC from 2 different models, glm and gam for predicting presence / absence. I know that in theory the model with a higher AUC is better, but what I am interested in is if statistically the increase in AUC from the glm model to the gam model is signifi

[R] Re : Re : float and double precision with C code

2008-07-17 Thread JS Ubei
ok, sorry, my mistake was the C printf. Thank you for your good answer Regards - Message d'origine De : JS Ubei <[EMAIL PROTECTED]> À : jim holtman <[EMAIL PROTECTED]> Cc : r-help@r-project.org Envoyé le : Jeudi, 17 Juillet 2008, 15h25mn 07s Objet : [R] Re : float and double precision

Re: [R] lm() question

2008-07-17 Thread Christoph Scherber
Dear Steven, Your xlim() function is what changes the behavior of the x axis values; If you remove the xlim() statement from your function, you get a "correct" x axis: ## YC=82:91 Age=rev(seq(2,11,1)) Num=c(2,0,8,21,49,18,79,28,273,175) box44=data.frame(YC,Age,Num) mod1=lm(log(Num+1)~YC, dat

[R] Re : float and double precision with C code

2008-07-17 Thread JS Ubei
thank you for your quick answer, I'm far of the digits capacity and my values are not the result of a computation. I'm developping a R package to acces a specific data source. And I need precision a few better. How can I do ? When I try this In R console, this is correct and what I need : >

Re: [R] Problems with lm()

2008-07-17 Thread Christoph Scherber
Dear Hsin-Ya, The problem here is that subject is a factor with 14 levels, and sequence again is a factor with 2 levels; so the subject:sequence interaction already uses up another (13*1)=13 d.f.; given that there are only 28 replicates, it is not surprising that there are no residual degrees o

Re: [R] spliting a string

2008-07-17 Thread Wacek Kusnierczyk
haven't even peeked into the docs, have you? try: strsplit(String, ".", fixed=TRUE) strsplit(String, "[.]") vQ Kurapati, Ravichandra (Ravichandra) wrote: > Hi > > > > String<-"130.5" > > > > Df<-Strsplit(".",":",String) > > > > Then Df get > >"" "" "" "" > >

Re: [R] float and double precision with C code

2008-07-17 Thread jim holtman
FAQ 7.31 Also read "What Every Computer Scientist Should Know About Floating-Point Arithmetic", ACM Computing Surveys, 23/1, 5–48, also available via http://docs.sun.com/source/806-3568/ncg_goldberg.html. On Thu, Jul 17, 2008 at 8:47 AM, JS Ubei <[EMAIL PROTECTED]> wrote: > Hi all, > > There is

[R] how to split the string

2008-07-17 Thread Kurapati, Ravichandra (Ravichandra)
Hi Str<-"130.1,2.2,3.1,..." I want the o/p like Dataframe1 row 130 2 3 . . Dataframe2 Col 1 2 1 .

[R] float and double precision with C code

2008-07-17 Thread JS Ubei
Hi all, There is a mistake for wich I need your ligths : /// I have a small C code : SEXP testData() { SEXP result; void * rans; float * my_data; int my_data_length; my_data_length = 2; my_data = new float[my_data_length]; m

Re: [R] spliting a string

2008-07-17 Thread Jim Lemon
On Thu, 2008-07-17 at 17:56 +0530, Kurapati, Ravichandra (Ravichandra) wrote: > Hi > > > > String<-"130.5" > > > > Df<-Strsplit(".",":",String) > > > > Then Df get > >"" "" "" "" > > But I want Df should contains > > > >Df > > "130" > > "5"

Re: [R] barchart with bars attached to y=0-line

2008-07-17 Thread Felix Andrews
## add horizontal grid: barchart(data=df,Ratio~reorder(Compound, as.numeric(Class))|Class, origin = 0, scales = list(x = "free"), panel=function(...) { panel.grid(h=-1, v=0); panel.barchart(...)}) ## make bars all the same width: library(latticeExtra) update(trel

[R] spliting a string

2008-07-17 Thread Kurapati, Ravichandra (Ravichandra)
Hi String<-"130.5" Df<-Strsplit(".",":",String) Then Df get "" "" "" "" But I want Df should contains Df "130" "5" If any body knows how to do it.tel me Thanks K.Ravichandra [[alternative HTML version deleted]] ___

Re: [R] barchart with bars attached to y=0-line

2008-07-17 Thread Henning Wildhagen
Dear Deepayan and other users, thanks a lot, that was exactly what i intended to get. However, there are some aspects of the plot that can be improved. It would be nice to have the same wisth of the bars in all panels. I saw the bow.width-argument, but as I understood it is no help to get a fix

[R] fastICA

2008-07-17 Thread Mikhail Spivakov
Hi everyone It looks like repeated runs of fastICA produce quite significantly different mixing matrices (not only in terms of sign and row order). I'm not a specialist, so would appreciate any advice on whether this should really be the case: > res3 = > fastICA(af[,2:20],4,alg.typ="parallel",fu

Re: [R] Labelling curves on graphs

2008-07-17 Thread Frank E Harrell Jr
Barry Rowlingson wrote: Why use color when you can use black and label the curves where they are most separated? This solves problems with color blindness, xeroxing, and faxing. Where should I put the labels in this example: > set.seed(123) > z=matrix(runif(6*50),50,6) > matplo

Re: [R] Likelihood ratio test between glm and glmer fits

2008-07-17 Thread Douglas Bates
On Thu, Jul 17, 2008 at 2:50 AM, Rune Haubo <[EMAIL PROTECTED]> wrote: > 2008/7/16 Dimitris Rizopoulos <[EMAIL PROTECTED]>: >> well, for computing the p-value you need to use pchisq() and dchisq() (check >> ?dchisq for more info). For model fits with a logLik method you can directly >> use the foll

Re: [R] calculate differences - strange outcome

2008-07-17 Thread Duncan Murdoch
Kunzler, Andreas wrote: Dear List, I ran into some trouble by calculating differences. For me it is important that differences are either 0 or not. So I don't understand the outcome of this calculation 865.56-(782.86+0+63.85+18.85+0) [1] -1.136868e-13 I run R version 2.71 on WinXP I could so

Re: [R] NAMESPACE vs internal.Rd

2008-07-17 Thread Berwin A Turlach
G'day Christophe, On Wed, 16 Jul 2008 18:22:49 +0200 [EMAIL PROTECTED] wrote: > Thanks for your answer. My pleasure. > > I guess writing > > a regular expression that says "export everything that does not > > start with a dot but do not export foo and bar" would be not > > trivial to write (at

Re: [R] calculate differences - strange outcome

2008-07-17 Thread Mark Difford
Hi Andreas, It's because you are dealing with binary or floating point calculations, not just a few apples and oranges, or an abacus (which, by the way, is an excellent calculating device, and still widely used in some [sophisticated] parts of the world). http://en.wikipedia.org/wiki/Floating_po

[R] Odp: calculate differences - strange outcome

2008-07-17 Thread Petr PIKAL
Hi [EMAIL PROTECTED] napsal dne 17.07.2008 11:47:42: > Dear List, > > I ran into some trouble by calculating differences. For me it is > important that differences are either 0 or not. So you shall not use computers. They do not work with infinite precision. See Faq 7.31 Regards Petr > > So

Re: [R] calculate differences - strange outcome

2008-07-17 Thread Berwin A Turlach
On Thu, 17 Jul 2008 11:47:42 +0200 "Kunzler, Andreas" <[EMAIL PROTECTED]> wrote: > I ran into some trouble by calculating differences. For me it is > important that differences are either 0 or not. If that is the case, restrict yourself to calculating with integers. :) > So I don't understand th

[R] model.tables standard errors

2008-07-17 Thread iwhite
Not sure how to interpret standard errors produced by model.tables(object, type="effects", se=T) For example, simplest possible case is single stratum anova with two equally replicated treatments (n observations each). The effects displayed are plus and minus half the difference between the tw

[R] calculate differences - strange outcome

2008-07-17 Thread Kunzler, Andreas
Dear List, I ran into some trouble by calculating differences. For me it is important that differences are either 0 or not. So I don't understand the outcome of this calculation 865.56-(782.86+0+63.85+18.85+0) [1] -1.136868e-13 I run R version 2.71 on WinXP I could solve my problem by using ro

Re: [R] Histogram with two colors depending on condition

2008-07-17 Thread hadley wickham
On Thu, Jul 17, 2008 at 5:13 PM, Mohammad Ehsanul Karim <[EMAIL PROTECTED]> wrote: > Dear List, > > Say, we generate data like this- > > dat<-rnorm(1000,1,2) > hist(dat) library(ggplot) qplot(dat, geom="histogram", colour = factor(dat < 0)) Hadley -- http://had.co.nz/

[R] How to compute loglikelihood of Lognormal distribution

2008-07-17 Thread Gundala Viswanath
Hi, I am trying to learn lognormal mixture models with EM. I was wondering how does one compute the log likelihood. The current implementation I have is as follows, which perform really bad in learning the mixture models. __BEGIN__ # compute probably density of lognormal. dens <- function(lamb

Re: [R] help with bivariate density plot question

2008-07-17 Thread Mark Difford
Hi Daniela, Spencer (? Graves) is not at home. Seriously, this is a list that many people read and use. If you wish to elicit a response, then you would be wise to give a better statement of what your difficulty is. The function you enquire about is well documented with an example, see ## libra

Re: [R] Histogram with two colors depending on condition

2008-07-17 Thread jim holtman
Here is something that is close: > x <- rnorm(1) > y <- hist(x, plot=FALSE) > plot(y, col=ifelse(y$mid<0,'red','green')) > On Thu, Jul 17, 2008 at 5:13 AM, Mohammad Ehsanul Karim <[EMAIL PROTECTED]> wrote: > Dear List, > > Say, we generate data like this- > > dat<-rnorm(1000,1,2) > hist(dat)

[R] Histogram with two colors depending on condition

2008-07-17 Thread Mohammad Ehsanul Karim
Dear List, Say, we generate data like this- dat<-rnorm(1000,1,2) hist(dat) How do i make the histogram, say, red (col = 2) before X = dat = 0, and rest say, green (col = 3) beyond X = dat = 0 in R? The resulting histogram could be like this http://ehsan.karim.googlepages.com/histogram.JPG (e

Re: [R] Likelihood ratio test between glm and glmer fits

2008-07-17 Thread Rune Haubo
2008/7/16 Dimitris Rizopoulos <[EMAIL PROTECTED]>: > well, for computing the p-value you need to use pchisq() and dchisq() (check > ?dchisq for more info). For model fits with a logLik method you can directly > use the following simple function: > > lrt <- function (obj1, obj2) { >L0 <- logLik(

Re: [R] Labelling curves on graphs

2008-07-17 Thread Barry Rowlingson
> Why use color when you can use black and label the curves where they are > most separated? This solves problems with color blindness, xeroxing, and > faxing. > Where should I put the labels in this example: > set.seed(123) > z=matrix(runif(6*50),50,6) > matplot(z,type='l',col=1,lty=1) A lab

Re: [R] plot(linear model) without lines

2008-07-17 Thread Uwe Ligges
See ?plot.lm [EMAIL PROTECTED] wrote: running R 2.5.1 on WinXP. plot(model formula here) produces 4 useful residual diagnostic plots. Two questions about them: 1. How can I isolate just one of the four, and have only that one be shown? str(plot(model)) didn't give me any insight. 2.

Re: [R] Fw: how i can install Rgraphviz in R2.7.1

2008-07-17 Thread Uwe Ligges
Please ask BioConductor related questions on the corresponding mailing list. In this case: Rgraphviz is an interface package to graphviz. With the current Windows binary of Rgraphviz you will need to install graphviz itself as well - in the older version 2.16 (newer versions of graphviz do not

Re: [R] shapiro wilk normality test

2008-07-17 Thread Emmanuel Charpentier
This one should (I am tempted to write "must") make its way to fortune ()... Thankyouthankyouthankyou ... Emmanuel Charpentier On Mon, 14 Jul 2008 14:58:13 -0600, Greg Snow wrote : > For those people who feel the need for a p-value to test normality on >

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