Re: [Rd] Project suggestion: Interface between R and graphic devices

2005-10-09 Thread Prof Brian Ripley
Krueger > http://www.biostatistic.de > > __ > R-devel@r-project.org mailing list > https://stat.ethz.ch/mailman/listinfo/r-devel > > -- Brian D. Ripley, [EMAIL PROTECTED] Professor of Applied Statistics,

Re: [Rd] using innov in arima.sim

2005-10-10 Thread Prof Brian Ripley
> that the "warming up" observations were sampled from innov, in case the > innovations are not gaussian? Take a look at the R-devel version of arima.sim. It _would_ be a good idea to read the posting guide and follow its requests. -- Brian D. Ripley, [EMAIL P

Re: [Rd] Post processing need for installing packages in rpms.

2005-10-11 Thread Prof Brian Ripley
t SRPM, which works for me. -- Brian D. Ripley, [EMAIL PROTECTED] Professor of Applied Statistics, http://www.stats.ox.ac.uk/~ripley/ University of Oxford, Tel: +44 1865 272861 (self) 1 South Parks Road, +44 1865 272866 (PA) Oxford OX1 3TG, UK

Re: [Rd] summary of Surv object crashes R 2.2.0 (PR#8203)

2005-10-11 Thread Prof Brian Ripley
gt; > summary(dat) > > I checked that the problem is in > summary(surv) > > Tested on previous versions of R (1.9.0, 2.1.0) in a friend's computer) > gives no results, but doesn't crash R -- Brian D. Ripley, [EMAIL PROTECTED] Professor of Applied Stat

Re: [Rd] Compile problem R 2.2.0 + Solaris 10 x86

2005-10-11 Thread Prof Brian Ripley
: Fatal error: Command failed for target `R' > Current working directory /tmp/apps/R-2.2.0-32/src > *** Error code 1 > The following command caused the error: > for d in m4 tools doc etc share src tests po; do \ > (cd ${d} && make R) || exit 1; \ > done > make: Fatal error: C

Re: [Rd] Error: .First.lib failed for 'SBMLodeSolveR'

2005-10-11 Thread Prof Brian Ripley
for '%s'", libraryPkgName(package)), > domain = NA) > 1: library(package, lib.loc = lib.loc, character.only = TRUE, verbose = FALSE) > Execution halted > See section 'System and foreign language interfaces' of the 'Writing R > Extensions' manual. > * > > > Eryk > &g

Re: [Rd] Manual page example of plot.window needs fixing

2005-10-11 Thread Prof Brian Ripley
+47 55 95 95 43 > e-mail: [EMAIL PROTECTED] > > ______ > R-devel@r-project.org mailing list > https://stat.ethz.ch/mailman/listinfo/r-devel > > -- Brian D. Ripley, [EMAIL PROTECTED] Professor of Applied Statistics, http:/

Re: [Rd] Using matprod from array.c

2005-10-12 Thread Prof Brian Ripley
y the code? > > Any help appreciated, > > Heather > > > Dr H Turner > Research Assistant > Dept. of Statistics > The University of Warwick > Coventry > CV4 7AL > > Tel: 024 76575870 > Url: www.warwick.ac.uk/go/heatherturner > >

Re: [Rd] rgl package demo causes R memory corruption under Windows

2005-10-13 Thread Prof Brian Ripley
eproduce this neither on Windows NT4 SP6 nor on Windows Server > 2003 SP1. > > Uwe > > __ > R-devel@r-project.org mailing list > https://stat.ethz.ch/mailman/listinfo/r-devel > > -- Brian D. Ripley,

Re: [Rd] R, Wine, and multi-threadedness.

2005-10-13 Thread Prof Brian Ripley
al). R under Linux can make use of a multithreaded BLAS, but I know of none available for Windows. -- Brian D. Ripley, [EMAIL PROTECTED] Professor of Applied Statistics, http://www.stats.ox.ac.uk/~ripley/ University of Oxford, Tel: +44 1865 272861 (self) 1 South Pa

Re: [Rd] Building R on Windows

2005-10-13 Thread Prof Brian Ripley
e[3]: *** [all] Error 2 > make[2]: *** [pkg-base] Error 2 > make[1]: *** [rpackage] Error 2 > make: *** [all] Error 2 > > Has anyone seen this error message before? Where can I find shared > library tools? It was built at the bootstrapping phase, or should have been. -- Brian D.

Re: [Rd] R, Wine, and multi-threadedness.

2005-10-13 Thread Prof Brian Ripley
On Thu, 13 Oct 2005, Hin-Tak Leung wrote: > Hin-Tak Leung wrote: >> Prof Brian Ripley wrote: >> >>> On Thu, 13 Oct 2005, Hin-Tak Leung wrote: > >>>> (2) The interesting question: As I understand it (could be wrong), >>>> R Win32 is (partly) mul

Re: [Rd] Installing R-2.2.0 package

2005-10-13 Thread Prof Brian Ripley
>>> >>> >>> >>>> Much thanks!!! >>>> - David P Dean >>>> Research Informatics >>>> PGRD Groton Labs >>>> (860)-441-5053 >>>> [EMAIL PROTECTED] >>>> -

Re: [Rd] R, Wine, and multi-threadedness.

2005-10-13 Thread Prof Brian Ripley
On Thu, 13 Oct 2005, Marc Schwartz (via MN) wrote: > On Thu, 2005-10-13 at 16:45 +0100, Hin-Tak Leung wrote: >> Prof Brian Ripley wrote: >> >>>> Now, the interesting questions are: (1) is Atlas multi-threaded on >>>> *every* platform, or more specifically,

Re: [Rd] Installing R-2.2.0 package

2005-10-13 Thread Prof Brian Ripley
On Thu, 13 Oct 2005, Dean, David P wrote: >> From: Prof Brian Ripley [mailto:[EMAIL PROTECTED] >> Sent: Thursday, October 13, 2005 11:42 AM >> To: Uwe Ligges >> Cc: Paul Gilbert; r-devel@r-project.org; Dean, David P >> Subject: Re: [Rd] Installing R-2.2.0 package &

Re: [Rd] Installing R-2.2.0 package

2005-10-13 Thread Prof Brian Ripley
7; length 280328 bytes > opened URL > == > downloaded 273Kb > > ERROR: failed to lock directory > '/home/asd9/gnu/R/SunOS-sparc32/R-2.2.0/site-library' for modifying > Try removing '/home/asd9/gnu/R/SunOS-sparc3

Re: [Rd] Installing R-2.2.0 package

2005-10-13 Thread Prof Brian Ripley
On Thu, 13 Oct 2005, Dean, David P wrote: >> From: Prof Brian Ripley [mailto:[EMAIL PROTECTED] >> Sent: Thursday, October 13, 2005 12:21 PM >> To: Dean, David P >> Cc: Uwe Ligges; r-devel@r-project.org; Paul Gilbert >> Subject: Re: [Rd] Installing R-2.2.0 package &

Re: [Rd] Building R on Windows

2005-10-13 Thread Prof Brian Ripley
On Thu, 13 Oct 2005, Jennifer Lai wrote: > Prof Brian Ripley wrote: > >> On Thu, 13 Oct 2005, Jennifer Lai wrote: >> >> >>> Hi, >>> I"m a newbie on building R on Windows. I followed the instructions >>> cited here, >>> http://ww

Re: [Rd] expm1, R-2.2.0 and Windows

2005-10-14 Thread Prof Brian Ripley
binary on CRAN was built on Sept 12, before the release of 2.2.0 (and before the beta period). It needs to be built under 2.2.0, when it will work. (Uwe, could you please trigger rebuilds as some things were changed in the alpha period, including the version of the mingw-runtime that

Re: [Rd] extending lattice to S4 classes

2005-10-15 Thread Prof Brian Ripley
t;) dots$data <- as.data.frame(dots$data) >call.list <- c(x = x, dots) > > # needed this to avoid an infinite loop because xyplot is defined only > for "x" >xyplot <- lattice::xyplot >ans <- do.call("xyplot", call.list) >

Re: [Rd] BIC doesn't work for glm(family=binomial()) (PR#8208)

2005-10-16 Thread Prof Brian Ripley
h pointing out that 'nobs' (and hence BIC) is not well-defined for a linear mixed model either: the appropriate multiplier suggested by the theory depends on the type of asymptotics which are assumed. -- Brian D. Ripley, [EMAIL PROTECTED] Professor of Applied Statisti

Re: [Rd] [R-gui] R GUI considerations (was: R, Wine, and multi-threadedness)

2005-10-16 Thread Prof Brian Ripley
esume that is part of the reason why applications flocked to MS-Office style GUIs a few years ago.) People (such as me) who are not comfortable with such styles are not in a good position to judge their needs. [...] -- Brian D. Ripley, [EMAIL PROTECTED] Pr

[Rd] MBCS support and iconv

2005-10-16 Thread Prof Brian Ripley
internationalization features in R-patched/R-devel (thanks in good part to Ei-ji Nakama), including support for postscript()/pdf() in non-Latin-1 languages. -- Brian D. Ripley, [EMAIL PROTECTED] Professor of Applied Statistics, http://www.stats.ox.ac.uk/~ripley/ University of

Re: [Rd] Display a plot in an applet.

2005-10-17 Thread Prof Brian Ripley
play a scatter plot(X axis data:1,2,4,5 and > Y-axis data:4,6,5, 7)produced in R as an Applet. How can this be done? > Please let me know. > Thanks, > Vasu. > > [[alternative HTML version deleted]] PLEASE do read the posting guide, and not send HTML mail. Is this the approp

[Rd] sort() and attributes

2005-10-18 Thread Prof Brian Ripley
Since it seems to have minimal impact this seems the best way forward, but I am open to counter-proposals. -- Brian D. Ripley, [EMAIL PROTECTED] Professor of Applied Statistics, http://www.stats.ox.ac.uk/~ripley/ University of Oxford, Tel: +44 1865 272861 (self) 1

Re: [Rd] RFC: API to allow identification of warnings and errors in the output stream

2005-10-18 Thread Prof Brian Ripley
lot of the internals work, and some developments are being held up by that. So this has to weighed against considering proposals which would appear to help just one user. I suspect that we will only want to go forward if a concise and strong case can be made from a group of developer

Re: [Rd] gfortran Makefile for windows

2005-10-18 Thread Prof Brian Ripley
ay so. Will add the URL to the R-admin manual, and request you add a mention of MinGW on your Wiki. -- Brian D. Ripley, [EMAIL PROTECTED] Professor of Applied Statistics, http://www.stats.ox.ac.uk/~ripley/ University of Oxford, Tel: +44 1865 272861 (self) 1 South

Re: [Rd] calling fortran from C

2005-10-20 Thread Prof Brian Ripley
normally no different from C to C). In this case you will be calling from a DLL either into an executable or a DLL and that will be slower than calling within a DLL, how much depending on the platform. -- Brian D. Ripley, [EMAIL PROTECTED] Professor of Applied Statistics, htt

Re: [Rd] image() with all NAs fails (PR#8228)

2005-10-20 Thread Prof Brian Ripley
gt; that is throwing the error. We want the error if a user specifies > diff(zlim) < 0 or non-finite z limits, we just don't want it if all the > z's are NA. But a test all(is.na(z)) looks a bit expensive for such a > rare case. It is not actually documented that zlim

Re: [Rd] Error in building package indices

2005-10-20 Thread Prof Brian Ripley
, > "mother", : >length of 'dimnames' [2] not equal to array extent > Execution halted > ERROR: installing package indices failed > ERROR > Installation failed. > > We believe that this could be due to package versioning, but are not sure. Not su

Re: [Rd] read.table error upon package installation (PR#8230)

2005-10-21 Thread Prof Brian Ripley
>> However, if I remove one of the spaces between A and B or B and C, the >> package compiles fine: >> x\t y >> A BC \t DEF >> >> I can only guess that there is some kind of parsing problem when there >> is more than one space be

Re: [Rd] R_MakeExternalPtr

2005-10-24 Thread Prof Brian Ripley
like > > SETLENGTH(sexp,1); > > Best wishes from sunny Austria, > > Thomas Baier > > __ > R-devel@r-project.org mailing list > https://stat.ethz.ch/mailman/listinfo/r-devel > > -- Brian D. Ripley, [EMAIL PROTECTED] Pr

Re: [Rd] R_MakeExternalPtr

2005-10-24 Thread Prof Brian Ripley
On Mon, 24 Oct 2005, TB wrote: > Brian, > > Prof Brian Ripley <mailto:[EMAIL PROTECTED]> wrote: >> This is one of those undocumented things (AFAIK): LENGTH applies only >> to 'vectors'. So don't use t and definitely don't set it for others.

Re: [Rd] download problem: Windows binaries - patched/devel versions

2005-10-24 Thread Prof Brian Ripley
gt; I'm guessing there's something haywire in my setup. > > Note that I can ftp the files without problem. -- Brian D. Ripley, [EMAIL PROTECTED] Professor of Applied Statistics, http://www.stats.ox.ac.uk/~ripley/ University of Oxford, Tel: +44 1865 2728

Re: [Rd] Problems with example(Grid) in grid package

2005-10-24 Thread Prof Brian Ripley
right now) Because many (maybe even most) png viewers do not handle transparency correctly. -- Brian D. Ripley, [EMAIL PROTECTED] Professor of Applied Statistics, http://www.stats.ox.ac.uk/~ripley/ University of Oxford, Tel: +44 1865 272861 (self) 1 South Parks Ro

Re: [Rd] X11 redraw events dropped? (PR#8250)

2005-10-24 Thread Prof Brian Ripley
indows to cover, and then reveal, the various plot windows, until -- > one > or more > of your graphs disappears. Move the graphs over each other to get the graphs > to > come > back. Etc. > > __ > R-devel@r-proje

Re: [Rd] Small issue with R's C API

2005-10-25 Thread Prof Brian Ripley
t as you seem to be assuming a C analogue of is.vector. -- Brian D. Ripley, [EMAIL PROTECTED] Professor of Applied Statistics, http://www.stats.ox.ac.uk/~ripley/ University of Oxford, Tel: +44 1865 272861 (self) 1 South Parks Road, +44 1865 272866

Re: [Rd] How to uninstall R when installed with "make install"

2005-10-25 Thread Prof Brian Ripley
On Tue, 25 Oct 2005, Rainer M. Krug wrote: > How can I uninstall R when I installed it with "make install"? Did you try 'make uninstall' as the manual says? Works for me. -- Brian D. Ripley, [EMAIL PROTECTED] Professor of Applied Statistics, http://www

Re: [Rd] Small issue with R's C API

2005-10-25 Thread Prof Brian Ripley
An R NULL does not map to a C NULL. Please learn to distinguish documented facts from uninformed guesswork. On Tue, 25 Oct 2005, Dominick Samperi wrote: > Prof Brian Ripley wrote: >> This is nothing to do with the C API: isVector and isMatrix are not >> part of the API (see Writi

Re: [Rd] performance of nchar

2005-10-25 Thread Prof Brian Ripley
; [1] 0.66 > > Is there any faster way of getting the length of string in R? > > Thank you in advance for your help! > > > Sincerely, > Jennifer > > ______ > R-devel@r-project.org mailing list > https://stat.ethz.ch/mailma

Re: [Rd] strptime problem for 2004-10-03 02:00:00

2005-10-25 Thread Prof Brian Ripley
1 <- ISOdatetime(2004, 10, 3, 1, 0, 0, tz = "GMT")) > ## [1] "2004-10-03 01:00:00 GMT" > > (t2 <- ISOdatetime(2004, 10, 3, 2, 0, 0, tz = "GMT")) > ##[1] "2004-10-03 03:00:00 GMT" > > ## difference of 2 hours - why? > t2 - t1 > ## Time difference of 2 hours > > > #

Re: [Rd] error from make: gcc -shared -L/usr/local/lib64 ... relocation R_X86_64_32...

2005-10-25 Thread Prof Brian Ripley
lready being compiled with -fPIC. I did struggle > with getting all the right development packages installed, so maybe I am > missing some critical package? > > Any help, suggestions, or pointers to 64-bit RedHat EL4 would be greatly > appreciated. -- Brian D. Ripley,

Re: [Rd] pairs(oma) warnings (PR#8252)

2005-10-25 Thread Prof Brian Ripley
xis annotation, 'mgp' and 'xaxp' or 'yaxp' for positioning, 'tck' or 'tcl' for tick mark length and direction, 'las' for vertical/horizontal label orientation, or 'fg' instead of 'col&

Re: [Rd] pb with dyn.load - fortran code now attached

2005-10-26 Thread Prof Brian Ripley
king for the following > >> is.loaded(symbol.For("sub")) > > The call to .Fortran use the (lowercase) name of the subroutine > as it would appear in the Fortran source code. > > .Fortran("sub", ...) Not at all the whole story. First (unfortunately), th

Re: [Rd] Borland C++ and [R] dyn.load() for windows

2005-10-26 Thread Prof Brian Ripley
I don't see any evidence that you asked for any to be and the example in README.packages uses __declspec(dllexport) in the original source. You are advised to look up the reference given there for further details. -- Brian D. Ripley, [EMAIL PROTECTED

[Rd] X11 resources

2005-10-27 Thread Prof Brian Ripley
e one would think it is implied by the tests that are done, but please let me know if this causes a problem. -- Brian D. Ripley, [EMAIL PROTECTED] Professor of Applied Statistics, http://www.stats.ox.ac.uk/~ripley/ University of Oxford, Tel: +44 1865 272861 (self) 1

Re: [Rd] R-devel CHTML problem

2005-10-27 Thread Prof Brian Ripley
> > Any help will be appreciated, > > Andy > > > __ > Andy Jaworski > 518-1-01 > Process Laboratory > 3M Corporate Research Laboratory > - > E-mail: [EMAIL PROTECTED] > Tel: (651) 733-6092 > Fax: (651) 736-3122

Re: [Rd] Error in ?strsplit

2005-10-28 Thread Prof Brian Ripley
the vector of splits of \code{x[i]}. > } > \details{ > - Arguments \code{x} and \code{split} will be coerced to character, so > + Argument \code{split} will be coerced to character, so > you will see uses with \code{split = NULL} to mean > \code{split = character(0)}, including i

Re: [Rd] model.response() as a generic function?

2005-10-28 Thread Prof Brian Ripley
if > model.response() is also a generic function so that we can make use of the > same function name for a large class of models we are working on. Is there > any possibility that this change can be made in the future version of R? > Thank you very much for your consideratio

Re: [Rd] S4 classes in existing packages

2005-11-01 Thread Prof Brian Ripley
lme4 matlab monoProc orientlib partsm pixmap tuneR on CRAM, stats4 in the R sources and most (all?) of BioC. -- Brian D. Ripley, [EMAIL PROTECTED] Professor of Applied Statistics, http://www.stats.ox.ac.uk/~ripley/ University of Oxford, Tel: +44 1865 2728

Re: [Rd] Yates' correction for continuity in chisq.test (PR#8265)

2005-11-01 Thread Prof Brian Ripley
On Mon, 31 Oct 2005, Prof Brian Ripley wrote: > On Sun, 30 Oct 2005, P Ehlers wrote: > >> [EMAIL PROTECTED] wrote: >>> Full_Name: foo ba baz >>> Version: R2.2.0 >>> OS: Mac OS X (10.4) >>> Submission from: (NULL) (219.66.32.183) >>> &

Re: [Rd] shared-mime-info (PR#8278)

2005-11-03 Thread Prof Brian Ripley
O__ Peter Dalgaard Øster Farimagsgade 5, Entr.B c/ /'_ --- Dept. of Biostatistics PO Box 2099, 1014 Cph. K (*) \(*) -- University of Copenhagen Denmark Ph: (+45) 35327918 ~~ - ([EMAIL PROTECTED]) FAX: (+45) 35327907

Re: [Rd] typo in browse.pkgs

2005-11-03 Thread Prof Brian Ripley
ich(!is.na(idx))] > vers2[xx] <- i.vers[which(!is.na(idx))] > i.vers <- vers2 > want.update <- rep(FALSE, length(i.vers)) > .Internal(pkgbrowser(c.pkgs, c.vers, i.vers, label, want.update)) > } > >> > > ____

Re: [Rd] typo in browse.pkgs

2005-11-03 Thread Prof Brian Ripley
On Thu, 3 Nov 2005, G. Sawitzki wrote: > At 15:44 + 03.11.2005, Prof Brian Ripley wrote: >> I believe you will find this is already fixed in R-patched and R-devel as >> the logs say (2005-10-07) >> >> r35790 Fixed a typo in aqua R code >> >> an

Re: [Rd] Alpha and Beta testing of R versions

2005-11-04 Thread Prof Brian Ripley
#x27;THANKS' file > {but that may not entice those who are already listed}, > or even in the NEWS of the new relase > or on the "Hall of fame of R beta testers" > > In order to discourage an increased number of non-bug reports we > may have to also open a "

Re: [Rd] Changes to environments in R-devel

2005-11-04 Thread Prof Brian Ripley
t; parent. Searches for variables in such an environment will not > automatically proceed to baseenv(), as searches do in current R releases. > > Duncan Murdoch > > ______ > R-devel@r-project.org mailing list > https://stat.ethz.ch/mailman/list

Re: [Rd] R-2.2.0 Compile problem on Slackware 10.2

2005-11-04 Thread Prof Brian Ripley
gt; > Anand > > __ > R-devel@r-project.org mailing list > https://stat.ethz.ch/mailman/listinfo/r-devel > > -- Brian D. Ripley, [EMAIL PROTECTED] Professor of Applied Statistics, http://www.stats.ox.ac.uk/~ri

Re: [Rd] clarification of library/require semantics

2005-11-04 Thread Prof Brian Ripley
dependent namespaces it loads. I think I would want the same semantics (whatever they are) for loadNamespace and library. I set my standard libraries in R_LIBS, so when I use lib.loc it is for experimental things. So I would neither want the .libPaths changed nor be affected if they were. -- B

Re: [Rd] mosaicplot() update

2005-11-07 Thread Prof Brian Ripley
ersity > > __ > R-devel@r-project.org mailing list > https://stat.ethz.ch/mailman/listinfo/r-devel > > -- Brian D. Ripley, [EMAIL PROTECTED] Professor of Applied Statistics, http://www.stats.ox.ac.uk/~ri

Re: [Rd] dgamma error condition?

2005-11-07 Thread Prof Brian Ripley
; >Any thoughts? No one has come up with any, so let us remove the errors in R-devel. Note that rgamma is not protected at C level: try rgamma(10, -2), or (worse) rgamma(10, -20) after removing the stop() call. -- Brian D. Ripley, [EMAIL PROTECTED] Professor of Applied

Re: [Rd] R-2.2.0: malloc probelm in regex code (PR#8287)

2005-11-08 Thread Prof Brian Ripley
te a small space (which shodul be free()d soon anyway). > > The actual regex whcih triggers this during the build is: > > ^tools($|_) > > __ > R-devel@r-project.org mailing list > https://stat.ethz.ch/mailman/listinfo/r-deve

Re: [Rd] Recursive dependencies(Rcmdr)

2005-11-11 Thread Prof Brian Ripley
ev 35749 language R .libPaths() [1] "/home/bs/pd/Rlibrary" "/usr/lib64/R/library" -- O__ Peter Dalgaard Øster Farimagsgade 5, Entr.B c/ /'_ --- Dept. of Biostatistics PO Box 2099, 1014 Cph. K (*) \(*) -- University of Copenhagen Denmark

[Rd] optimized BLAS

2005-11-14 Thread Prof Brian Ripley
there are no such versions of AMD64 to my knowledge). It runs on my Athlon XP systems, and even under Windows. I've added comments in R-admin.texi and Windows support, in both R-patched and R-devel. -- Brian D. Ripley, [EMAIL PROTECTED] Professor of Applied St

Re: [Rd] Bug or a feature that I completely missed?

2005-11-16 Thread Prof Brian Ripley
ction(x, ..., drop = T) whereas in R > args("[.data.frame") function (x, i, j, drop = Since [ is primitive you cannot use args() on it, but its argument list is more like S's (which is f(x, ..., drop = T) for the generic and all methods). I don't believe this

Re: [Rd] Problem with R.2.2 "No rule to make target `d:/prog/r/rw2011/include/R.h"

2005-11-16 Thread Prof Brian Ripley
irectory. Please remove any *.d and Makedeps files. -- Brian D. Ripley, [EMAIL PROTECTED] Professor of Applied Statistics, http://www.stats.ox.ac.uk/~ripley/ University of Oxford, Tel: +44 1865 272861 (self) 1 South Parks Road, +44 1865 272866 (PA) Oxf

Re: [Rd] two-way communication using Unix pipes

2005-11-16 Thread Prof Brian Ripley
nothing with stdin, so standard rules about e.g. line-buffering apply. And --no-readline is only relevant if R is `connected to a terminal', since R_ReadConsole talks directly to stdin (via fgets) if !R_Interactive. R is Open Source and you can get definitive answers by reading the code.

Re: [Rd] R-exts.texi in SVN version 36380

2005-11-17 Thread Prof Brian Ripley
nd fixed within hours. There were other markup problems, e.g. we use @R{} for R. -- Brian D. Ripley, [EMAIL PROTECTED] Professor of Applied Statistics, http://www.stats.ox.ac.uk/~ripley/ University of Oxford, Tel: +44 1865 272861 (self) 1 South Parks Road,

Re: [Rd] using a factor as col argument in plot:

2005-11-18 Thread Prof Brian Ripley
return R_TRANWHITE; indx = REAL(x)[i] - 1; if(indx < 0) return Rf_dpptr(CurrentDevice())->bg; else return R_ColorTable[indx % R_ColorTableSize]; } return 0; /* should not occur */ } but I could see no checks of type in any of t

Re: [Rd] NAMESPACE, S4, and .onLoad

2005-11-22 Thread Prof Brian Ripley
discussed this with John Chambers, his preference was that the 'methods' package be loaded and attached whenever S4 methods are in use. The advice does reflect that (rather than, say, advising that the 'methods' namespace be imported.) -- Brian D. Ripley,

Re: [Rd] make check fails for R 2.3.0 (PR#8343)

2005-11-23 Thread Prof Brian Ripley
to remember that the R-devel sources are not thoroughly tested and are not intended to be in working order on all platforms. (Automated testing lags a day or two behind, and fixing can lag further.) So if you are able to report something that is not obvious with an identified cause it is very he

Re: [Rd] winMenuAdd

2005-11-23 Thread Prof Brian Ripley
;> [7] "base" > > This seems to be a bug introduced in R-patched (and R-devel). > > R-2.2.0 release correctly reports: > > Error in winMenuAdd(menuname, NULL, NULL) : > unable to add menu (Only 16 menus are allowed) > > > Uwe Ligges > > __

Re: [Rd] [PATCH] Add fpicflags for Intel(R) Fortran Compiler (PR#8344)

2005-11-23 Thread Prof Brian Ripley
- > Hash: SHA1 > > Dear Prof. Ripley, > > Prof Brian Ripley schrieb: > | 1) The documented way to specify this is to set FPICFLAGS in > | config.site: see the example in R-admin for the PG compilers. When you > | tried that, what went wrong? > Nothing went wrong. Howeve

Re: [Rd] [PATCH] Add fpicflags for Intel(R) Fortran Compiler (PR#8344)

2005-11-23 Thread Prof Brian Ripley
/ifort, so this will need to wait until it is put back on a P4 box.) On Wed, 23 Nov 2005, Prof Brian Ripley wrote: > I've some playing with the Intel compilers, currently only on ia32. As far > as I can see Intel provides compilers for only two OSes and on 50% of those > -fPIC is

Re: [Rd] Infinite recursion in S3 methods crashes R on windows (related to PR#8203?)

2005-11-23 Thread Prof Brian Ripley
stack overflow. and the Windows CHANGES file says The maximum C stack size for RGui.exe and Rterm.exe has been increased to 10Mb (from 2Mb); this is comparable with the default on Linux systems and may allow some larger programs to run without crashes. -- Brian D. Ripley, [

Re: [Rd] qbinom returns NaN

2005-11-23 Thread Prof Brian Ripley
all your efforts to make R what it is today. > Best Wishes, > spencer graves > > -- > Spencer Graves, PhD > Senior Development Engineer > PDF Solutions, Inc. > 333 West San Carlos Street Suite 700 > San Jose, CA 95110, USA > > [EMAIL PROTECTED] > www.

Re: [Rd] winMenuAdd

2005-11-24 Thread Prof Brian Ripley
alone as much as possible because testing them is so tedious.) [Not copied to the poster as he does not do so.] -- Brian D. Ripley, [EMAIL PROTECTED] Professor of Applied Statistics, http://www.stats.ox.ac.uk/~ripley/ University of Oxford, Tel: +44 1865 272861 (self) 1

Re: [Rd] write.csv

2005-11-24 Thread Prof Brian Ripley
>> R-devel@r-project.org mailing list >> https://stat.ethz.ch/mailman/listinfo/r-devel >> > > ______ > R-devel@r-project.org mailing list > https://stat.ethz.ch/mailman/listinfo/r-devel > > -- Bri

Re: [Rd] write.csv ignores 'row.names'

2005-11-24 Thread Prof Brian Ripley
inates the first "interesting" colum. >>> col.names is not accepted by r (do i habe to start a package first? which >>> one?) >>> >>> thx >>> >>> sven >>> >>> [[alternative HTML version deleted]] >>>

Re: [Rd] Buliding a package (on Windows) does not produce libs directory

2005-11-25 Thread Prof Brian Ripley
> installing indices > preparing package blockmodeling for lazy loading > adding MD5 sums > > > > packaged installation of package 'blockmodeling' as blockmodeling_0.1.0.zip > * DONE (blockmodeling) > > ______ > R-devel@r-project.org mailing list > https:

Re: [Rd] segfault on write.dcf with gzfile connection

2005-11-27 Thread Prof Brian Ripley
system which produces and maintains automatic annotation on >system which produces and maintains automatic annotation on >system which produces and maintains automatic annotation on >system which produces and maintains automatic annotation on >system

Re: [Rd] segfault on write.dcf with gzfile connection

2005-11-28 Thread Prof Brian Ripley
re much more common these days. > Thinking out loud: Does writecon need to be variadic? It is only > called once with a fixed format string "%s%s". It does not, but the print method for gzfile connections does. -- Brian D. Ripley, [EMAIL PROTECTED] Professor of

Re: [Rd] No Rmath.h when making just standalone library

2005-11-28 Thread Prof Brian Ripley
failing steps > are: > > tar xzf ../R-2.2.0.tar.gz > ./configure > cd src/nmath/standalone > make > > Would be nice if this worked, or if the issue were just > mentioned in src/nmath/standalone/README. It used to work as documented, and now does again.

Re: [Rd] Proposed Patch for table.Rd

2005-11-28 Thread Prof Brian Ripley
mentioned in relevant posts where it was suggested by the > responder to see ?table. > > HTH, > > Marc Schwartz > > -- Brian D. Ripley, [EMAIL PROTECTED] Professor of Applied Statistics, http://www.stats.ox.ac.uk/~ripley/ University of Oxford,

Re: [Rd] Building a windows binary of a package on Linux

2005-11-30 Thread Prof Brian Ripley
nux. We don't understand why some people have reported failures, but as this is not supported (and so is not tested regularly) we removed it from the documentation a while back. But both Marc Schwartz and I succeeded a month or two ago. -- Brian D. Ripley, [EMAIL PROT

Re: [Rd] \dQuote{} in \code{} not processed

2005-11-30 Thread Prof Brian Ripley
t, using @code{typewriter} font if possible. Is `literal example' not warning enough? I'll add an explicit statement, but this is the first time I have seen any indication that anyone thought otherwise. -- Brian D. Ripley, [EMAIL PROTECTED] Professor of Applied St

[Rd] tuned BLAS

2005-12-01 Thread Prof Brian Ripley
x27;s lack of interest as all our current compute servers are AMD. The revelation was ACML: fast, easy to use even on Windows and completely gcc-compatible. -- Brian D. Ripley, [EMAIL PROTECTED] Professor of Applied Statistics, http://www.stats.ox.ac.uk/~ripley/ University

Re: [Rd] (not just!) Windows R CMD build leftovers

2005-12-02 Thread Prof Brian Ripley
g copy) >> @@ -434,6 +434,8 @@ >> if($doit && R_system($cmd)) { >> $log->error(); >> $log->print("Installation failed.\n"); >> +$log->print("Removing '$libdir'\n"); >> +rmtree($libdir); >>

Re: [Rd] Enlightenment sought and a possible buglet in vector.Rd

2005-12-02 Thread Prof Brian Ripley
t; So my question is why does R, when "foo(3)" is issued on the command > line, not print the value returned by the function? R does not print the value of a while() loop. Try x <-3 z <- x/4 while( abs(z*z*z-x) > 1e-10 ){ z <- (2*z+x/z^2)/3 } .Last.value a

Re: [Rd] Enlightenment sought and a possible buglet in vector.Rd

2005-12-02 Thread Prof Brian Ripley
par.def <- par(no.readonly=TRUE) on.exit(par(par.def)) g(tt <- sys.on.exit()) str(tt) invisible() } f2() illuminating. -- Brian D. Ripley, [EMAIL PROTECTED] Professor of Applied Statistics, http://www.stats.ox.ac.uk/~ripley/ University of Ox

Re: [Rd] Problem with fitdistr for gamma in R 2.2.0

2005-12-06 Thread Prof Brian Ripley
83, 11.06, 11.64, 11.85, 12.02, >>>> 12.4, 12.64, 12.96, 13.44, 14.06, 14.07, 14.37, 15.4, 15.6, 15.92, >>>> 16.23, 16.6, 16.97, 17.06, 17.8, 18.69, 18.73, 19.2, 19.51, 19.54, >>>> 20.57, 21.05, 22.23, 27.02) >>>> >>>> Lep pozdrav / With regards, >&g

Re: [Rd] typo in `eurodist'

2005-12-07 Thread Prof Brian Ripley
es(eurodist)$Labels[9] > [1] "Gibralta" > > should be `Gibraltar'. labels(eurodist) is clearer. -- Brian D. Ripley, [EMAIL PROTECTED] Professor of Applied Statistics, http://www.stats.ox.ac.uk/~ripley/ University of Oxford, Te

Re: [Rd] qt for df < 1

2005-12-08 Thread Prof Brian Ripley
t I'm curious about whether someone has already looked into > this can of worms. Note from the help page: df: degrees of freedom (> 0, maybe non-integer). 'df = Inf' is allowed. For 'qt' only values of at least one are currently support

Re: [Rd] Blocking problem with embeded R (windows)

2005-12-09 Thread Prof Brian Ripley
be greatly appreciated, > Simon Knapp > > __ > R-devel@r-project.org mailing list > https://stat.ethz.ch/mailman/listinfo/r-devel > > -- Brian D. Ripley, [EMAIL PROTECTED] Professor of Applied Statistics, http://w

Re: [Rd] How to implement package-specific options?

2005-12-09 Thread Prof Brian Ripley
possible to have your own options.Rd and help() will detect this and report there are two or more, but end-users may be confused. Or is it better to implement a separate mechanismn, perhaps something like ps.options()? I think package sm() has a good solution. -- Brian D. Ripley

Re: [Rd] external pointers

2005-12-12 Thread Prof Brian Ripley
ect.org, but my recollection is that is was not up to date (and in particular not re finalizers). On my TODO list is to add end-user documentation to `Writing R Extensions'. -- Brian D. Ripley, [EMAIL PROTECTED] Professor of Applied Statistics, http://www.stats.ox.ac.uk/

Re: [Rd] [R] data.frame() size

2005-12-12 Thread Prof Brian Ripley
gger sum(sapply(d, object.size))/1024^2 [1] 7.629501 # or is it ?If its not really 10 times bigger, why 10 times longer above ? Row names!! r <- as.character(1:1e6) object.size(r) [1] 7256 object.size(r)/1024^2 [1] 68.6646

Re: [Rd] external pointers

2005-12-12 Thread Prof Brian Ripley
On Mon, 12 Dec 2005, Byron Ellis wrote: > There's also Luke's own site, in particular http://www.stat.uiowa.edu/ > ~luke/R/weakfinex.html Hmm, that _is_ a link on the page I pointed you to, under its actual subject, weak references. > On Dec 12, 2005, at 12:16 AM, Prof

Re: [Rd] 0/1 vector for indexing leads to funny behaviour (PR#8389) (maybe a documentation deficiency?)

2005-12-13 Thread Prof Brian Ripley
quot;a". But as many times as there is a 1 in a. >> >> Best regards, >> Axel >> >> >> Appendix: >> >> b = c("a","b","c","d") >> a = c(0,1,1,0) >> b[as.logical(a)] >> b[a] >> a = c(1,0,1,0) &g

Re: [Rd] R_PROFILE on Windows

2005-12-13 Thread Prof Brian Ripley
t's the > correct way to specify the R_PROFILE variable and have R use it on > Windows? > >Ps: I've tested it on R 2.2.0 and on r-devel r36675, on Windows > XP SP2. Sorry if this is a non-bug. I'm a poor linux user trying to > survive on Windows, so I might have

[Rd] Building R with f2c - still needed?

2005-12-13 Thread Prof Brian Ripley
Does anyone have a need to use f2c rather than a Fortran compiler to build R? It is yet one more thing to test, and as it only works on 32-bit platforms it is something that I will shortly no longer be able to test. -- Brian D. Ripley, [EMAIL PROTECTED] Professor of Applied

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