Re: [Rd] Patch for r-intro to update xgobi to ggobi

2006-05-08 Thread Uwe Ligges
hadley wickham wrote: > Patch attached. > > If this is acceptable, would someone please be able to check this in for > me? Probably you do not wanted to post this to R-edev (where the attachment has been stripped off anyway) Uwe Ligges > Than

Re: [Rd] Patch for r-intro to update xgobi to ggobi

2006-05-08 Thread Uwe Ligges
Uwe Ligges wrote: > hadley wickham wrote: > >> Patch attached. >> >> If this is acceptable, would someone please be able to check this in >> for me? > > > > Probably you do not wanted to post this to R-edev (where the attachment > has been stripp

Re: [Rd] cpu usage stays at 100% (PR#8903)

2006-05-26 Thread Uwe Ligges
better using R-2.3.1 beta)? We have not had any other report on such a behaviour so far. Uwe Ligges > __ > R-devel@r-project.org mailing list > https://stat.ethz.ch/mailman/listinfo/r-devel ___

Re: [Rd] Bitmap device available for R CMD check?

2006-06-01 Thread Uwe Ligges
Friedrich Leisch wrote: >>On Wed, 31 May 2006 10:57:54 -0400, >>Kuhn, Max (KM) wrote: > > > > Hi, > > I have a package that I'd like to submit to CRAN that does Sweave-like > > processing on Open Document format files from Open Office. > > Sounds very interesting! > > > > If I

Re: [Rd] task view errors

2006-06-02 Thread Uwe Ligges
Paul Gilbert wrote: > I am getting several errors about Windows only packages when I use task > views. Is this suppose to be a Windows-centric utility? Paul, not at all, but the 3 packages mentioned below only work under Windows, because they depend on software such as DCOM, OpenBUGS and MIM,

Re: [Rd] task view errors

2006-06-02 Thread Uwe Ligges
Achim Zeileis wrote: > Paul, > > ctv is a contributed package... > > >>I am getting several errors about Windows only packages when I use >>task views. Is this suppose to be a Windows-centric utility? > > > No. > I'll see whether there is an easy way to keep install.views() from > installing

Re: [Rd] Editing a package with a NAMESPACE in place

2006-06-06 Thread Uwe Ligges
kage source, then reinstalling and reloading? > > Thanks, > Sean > See ?assignInNamespace and ?fixInNamespace During developing, I suggest to remove the NAMESPACE temporarily. Uwe Ligges __ R-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-devel

Re: [Rd] Making a windows packages with zip

2006-06-12 Thread Uwe Ligges
ip file was a hack in the first place, but is there > any way to continue to make windows packages easily, or should I grit > my teeth and install the cross compilation tool chain? Either the latter or ask the Windows users to install the source package. Uwe Ligges > Thanks, &g

Re: [Rd] Making a windows packages with zip

2006-06-12 Thread Uwe Ligges
this is what a user reported) Oh well, certainly the user forgot to install the required tools as mentioned in the "R Installation and Administration" manual. Uwe Ligges > Hadley __ R-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-devel

Re: [Rd] about integration of a library into package creation

2006-06-12 Thread Uwe Ligges
p) > useDynLib(ade4) > importFrom("dist.dudi", "ade4") Please do it the right way (package name first!): importFrom("ade4", "dist.dudi") Uwe Ligges > importFrom("solve.QP", "quadprog") > importFrom("mstree", "

Re: [Rd] about integration of a library into package creation

2006-06-13 Thread Uwe Ligges
If you want to use the CRAN package quadprog, you should import its functionality, but do NOT load its dynamic library with useDynLib(), this will be done by the namespace mechanismsm. Why do you want to put its dll anywhere? Simply install the package quadprog and use it in your namespa

Re: [Rd] Bug in nortest cvm.test package (PR#8980)

2006-06-16 Thread Uwe Ligges
rt to the package maintainer. Please do not send bug reports on contributed packages to R-bugs! Uwe Ligges > I've been running some normality tests using the nortest package. For > some of my datasets the Cramer-von Mises normality test generates an > extremely high probabilit

Re: [Rd] Package Unit Testing

2006-07-02 Thread Uwe Ligges
miguel manese wrote: > Hello, > > Do we have like an official unit testing framework for packages? Like > we do R CMD check, and say the scripts in /test are executed? The scripts are executed with R CMD check. What else do you need? Uwe Ligges > Or do we roll out our own outs

Re: [Rd] options("quit.with.no.save"), and Windows installer changes

2006-07-04 Thread Uwe Ligges
, using the *.txt (or > *.html) help files? Well, the user has to ask help(topic, chmhelp = FALSE) in this case, or (s)he get the message: No CHM help for 'foo' in package 'pkg' is available: the CHM file for the pack

Re: [Rd] options("quit.with.no.save"), and Windows installer changes

2006-07-05 Thread Uwe Ligges
n already did! From CHANGES: "The installer can set defaults for MDI/SDI display, help style, and default action on q(). Custom builds of R can change these defaults." Uwe Ligges > Thanks for considering this proposition. > Best, > >

[Rd] R sources: .tgz oder .tar.gz

2006-07-31 Thread Uwe Ligges
This is a minor documentation inconsistency: While the R Installation and Administration manual speaks about the file "R-x.y.z.tgz", this has to be replaced by "R-x.y.z.tar.gz" for x > 1. Uwe Ligges __ R-devel@r-project

Re: [Rd] building windows packages under wine/linux and cross-compiling.

2006-08-02 Thread Uwe Ligges
ount > for doing cross-compile's. I cannot imagine: Why should one want to perform difficult cross compiling if you have Windows available? And why should I run R under wine? If I like Windows, I use Windows, if I have like Linux, there is no reason to run R under wine. Uwe Ligges >

Re: [Rd] Request to Windows NT4 users

2006-08-03 Thread Uwe Ligges
Duncan Murdoch wrote: > I have just updated the MinGW tools to the latest versions. These don't > include a patch that was intended to ensure NT 4 compatibility, but I > don't know if the patch is still necessary. > > If anyone is still using NT4, could you please download R-patched, and > s

Re: [Rd] how to test packages under platforms we don't have?

2006-08-04 Thread Uwe Ligges
do this on systems > they don't have, because "CRAN does check" is used in a wide sense and includes, among others, also my *Windows* server in Dortmund that does the Windows checks. (If you have some Windows license, a virtual machine can do the job.) Uwe Ligges

Re: [Rd] dev.copy()

2006-08-06 Thread Uwe Ligges
.) should do it itself. There is an example on the help page ?dev.copy. So: What is difficult here (it is hard for us to anticipate what you are not understanding)? What about giving an example of code that shows how you undertsood that page, so we can try to correct. Uwe Ligges >

Re: [Rd] Customized Makefiles (C++ and R)

2006-08-07 Thread Uwe Ligges
You might want to publish you package on some URL and perhaps someone reading this list looks at it and is able to help, but without seeing the details, it wil be hard and only guesswork. Uwe Ligges Selwyn-Lloyd McPherson wrote: > If I do R CMD CHECK, R uses the makefile that came with

Re: [Rd] how to include a windows dll in a package

2006-08-15 Thread Uwe Ligges
package is GPL, R is GPL, so this part should be fine. > >>> Or in general is there a better way than supplying the dll to use a >>> third-party library (libxml2) in a package which should build on windows as >>> well? >> As I understand it, several

Re: [Rd] Internal flag for S4 objects

2006-09-03 Thread Uwe Ligges
again under current R-devel tomorrow. They won't appear on CRAN master before Wednesday. In the meantime, the link to R-2.3.x packages will remain active and some packages simply won't work. Best, Uwe Ligges __ R-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-devel

Re: [Rd] Failure to build home-made package on WINDOWS 2000 professional

2006-09-11 Thread Uwe Ligges
l: No such file or directory. Stop. > make: *** [pkg-log2html] Error 2 > *** Installation of log2html failed *** > Removing 'D:/tmp/log2html.Rcheck/log2html' > > Can anybody provide me with hints how to solve this > pro

Re: [Rd] problems in installing packages with R version 2.4.0 alpha (2006-09-05 r39134)

2006-09-12 Thread Uwe Ligges
Prof Brian Ripley wrote: > At least some of this will go away if you use a current version of 2.4.0 > alpha rather than one that is a week old (as the posting guide does ask). > We are now at r39258, and some of those binary packages were built against > a substantially later version of 2.4.0

Re: [Rd] NAMESPACE

2006-09-22 Thread Uwe Ligges
not use NAMESPACE. > > Is there a way to "export" a name so that the current package > user can see it, but other packages cannot see it? My working > assumption is that this is not possible, so I use a prefix like > the package name to keep function names "local.&quo

Re: [Rd] R CMD build when the package name is different from the directory name

2006-09-29 Thread Uwe Ligges
from >> each other. > > You can distinguish the tarballs according their version number and patch > level (they are called "--.tar.gz" > >> Perhaps you can make this work for you by using a more meaningful >> description than version number in your br

Re: [Rd] Build error/zlib question

2006-09-29 Thread Uwe Ligges
elp. The entry points are no longer exported, you probably have to specify the zlib header files (which reside in R/src/extra/zlib). Uwe Ligges > Some snippets from the build process: > > R-2.3.1 > > making DLL ... > gcc -Ic:/R-2.3.1/src/extra/zlib -DHAVE_ZLIB -Ic:/R-2.3.

Re: [Rd] Rcmd install mypkg

2006-10-01 Thread Uwe Ligges
Gabor Grothendieck wrote: > This would seem to violate the user interface stereotype that > command lines are case insensitive on Windows. This is an improvement. R tries to be as unique as possible on all platforms. Uwe Ligges > On 10/1/06, Duncan Murdoch <[EMAIL PROTECTED]>

Re: [Rd] pdf() and postscript() fails (PR#9268)

2006-10-02 Thread Uwe Ligges
to load default encoding > In addition: Warning message: > failed to load encoding file 'WinAnsi.enc' Have you removed some files from your installation? Uwe Ligges >> postscript() > Error in postscript() : failed to load encoding > In addition: Wa

Re: [Rd] http://cran.r-project.org/contrib/extra/

2006-10-19 Thread Uwe Ligges
Gabor Grothendieck wrote: > I can't seem to find any way to get from the main R page to > >http://cran.r-project.org/contrib/extra/ Everything in there is linked on CRAN -> Software - Other Uwe Ligges > via any series of links. Does such a path

Re: [Rd] sort function (PR#9309)

2006-10-20 Thread Uwe Ligges
, my try does not transpose anything: x <- 5:1 x sort(x) So, please Uwe Ligges > __ > R-devel@r-project.org mailing list > https://stat.ethz.ch/mailman/listinfo/r-devel __ R-devel@r

Re: [Rd] [R] R-2.4.0 and MS Vista OS - installing packages

2006-10-21 Thread Uwe Ligges
Vista, it would be nice to be able (i.e. knowing what to do) to apply relevant changes before the next major release (R-2.5.0?). Best, Uwe Charles Annis, P.E. wrote: > Problem solved! > > Thanks to all and especially Clint Bowman and Uwe Ligges who pointed to the > fly in the o

Re: [Rd] sort function (PR#9309)

2006-10-21 Thread Uwe Ligges
annot expect sort to do anything meaningful when applied to matrices or arrays other than returning a sorted vector of the elements, and that is what sort does nowadays. Best, Uwe Ligges > Regards, Ulrike > > -- Original Message --- > From: Uwe Ligges <[EMAIL PROTECTE

Re: [Rd] ANN/RFC: package providing TAB completion for readline-based R

2006-10-24 Thread Uwe Ligges
Deepayan Sarkar wrote: > Announcement: > > (For those every-once-in-a-while occasions when you run R from a > terminal instead of Emacs, and then wish something would happen when > you hit TAB...) > > Last week, I started looking at the GNU Readline documentation to see > if I could figure out

Re: [Rd] R CMD check warning about boot ?

2006-11-30 Thread Uwe Ligges
Dirk Eddelbuettel wrote: > Running R CMD check on a local package, I get > > * checking Rd files ... OK > * checking Rd cross-references ... WARNING > Error in .find.package(package, lib.loc) : > there is no package called 'boot' Probably the boot installation in one of your libraries i

Re: [Rd] Error importing data (PR#9409)

2006-12-05 Thread Uwe Ligges
Please, how do you define a "blank" value? The following works perfectly for me: File looks like: SpaceTabSpace 1Tab2 R> read.table(file, sep="\t") V1 V2 1 NA NA 2 1 2 Uwe Ligges [EMAIL PROTECTED] wrote: > Full_Name: Miguel Andrade > Version: 2.3.1

Re: [Rd] Cannot run R (PR#9411)

2006-12-07 Thread Uwe Ligges
That it does not run does not mean there is a bug in R, so why do you submit a bug report that must be handled manually by some R Core member? Please tell us the error message, we cannot help you unless you provide us with the relevant details. Uwe Ligges [EMAIL PROTECTED] wrote: > Full_N

Re: [Rd] Problem with tuned Rblas from CRAN with R-2.4.0

2006-12-12 Thread Uwe Ligges
I just looked into the one for P4 and it does export zdrot_ and works for me. Is your one from CRAN master? Uwe Ligges Daniel Nordlund wrote: > I encountered the following problem in R-2.4.0 for Windows binary downloaded > from CRAN (data from R-help post by Ethan Johnsons). I was also

Re: [Rd] bug in sqlSave with fast=F option (PR#9429)

2006-12-23 Thread Uwe Ligges
Please read how to report bugs: 1. sqlSave is not part of R's base packages, hence please do not submit a bug report here but ask the package maintainer of the corresponding package. 2. You have tested with an outdated version of R (2.4.1 is recent). Uwe Ligges [EMAIL PROTECTED]

[Rd] Windows binary package builder and checker

2006-12-23 Thread Uwe Ligges
funding the machine, electricity, space and bandwidth. Best, Uwe Ligges __ R-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-devel

Re: [Rd] Package is not on the repository (PR#9450)

2007-01-13 Thread Uwe Ligges
! Particularly, SAGx is a Bioconductor package: http://bioconductor.org/packages/1.9/bioc/html/SAGx.html Hence please look at the BioC repository and ask on the corresponding mailing list, in case there is really something wrong! Uwe Ligges [EMAIL PROTECTED] wrote: > Full_Name: Alexandra R Mendes

Re: [Rd] R 2.4.0 on Solaris 10 (PR#9441)

2007-01-13 Thread Uwe Ligges
(but on the mailing list R-help rather than submitting a bug report!) if you still fail with the attempts to install R. Uwe Ligges [EMAIL PROTECTED] wrote: > Full_Name: Ricardo Aponte > Version: R 2.4.0 > OS: Solaris 10 > Submission from: (NULL) (200.71.37.195) > > > Hel

Re: [Rd] Whine in dual core Windows PC if R uses full CPU capacity

2007-01-15 Thread Uwe Ligges
Ulrike, It can happen that different types of simulations and programs can put load on different regions of the CPU and comsume different amounts of power or simply are causing different patterns in the power consumptions Two things might cause the noise (at least, I have seen these things in

Re: [Rd] write_PACKAGES's fields default

2025-03-11 Thread Uwe Ligges
l to reuse repository data. Many thanks for your consideration, LluĂ­s PD: From CRAN perspective CRAN_packages_db() function can be used to get Additional_repositories, but this is limited to CRAN and won't work for BiocViews on Bioconductor or for other arbitrary fields like '&quo

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