Re: [Rd] libcurl support and curlGetHeaders warning message in R CMD check

2015-02-01 Thread Uwe Ligges
is rather new and may have changed the days before you wrote. Best, Uwe Ligges best, -skye __ R-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-devel __ R-devel@r-project.o

Re: [Rd] Imports problem

2015-02-16 Thread Uwe Ligges
On 16.02.2015 14:35, Duncan Murdoch wrote: On 16/02/2015 8:20 AM, Therneau, Terry M., Ph.D. wrote: > I'm testing out a new version of coxme and R CMD check fails with "could not find function > ranef" (or random.effects or fixef, or anything from nlme). The NAMESPACE file has t

Re: [Rd] Small typo in german translation

2015-02-16 Thread Uwe Ligges
Please send comments related to transaltions to the corresponding translation teams: http://developer.r-project.org/TranslationTeams.html In this case I am CCIng Detlef Steuer. Best, Uwe Ligges On 16.02.2015 09:29, Rainer Hurling wrote: Dear developers, I found a small typo in the german

Re: [Rd] Title case in DESCRIPTION for package where a word is a function name

2015-04-24 Thread Uwe Ligges
sed in single quotes. Best, Uwe Ligges Ben Bolker __ R-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-devel __ R-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-devel

Re: [Rd] CRAN submit page down

2015-04-26 Thread Uwe Ligges
r the inconvenience and best wishes, Uwe Ligges Bill On Apr 23, 2015, at 2:52 PM, Dirk Eddelbuettel wrote: Andrie noticed that first, and I can confirm: from our end, it looks as if the backend to http://cran.r-project.org/submit.html is currently down. Dirk -- http://dirk.eddelbuette

Re: [Rd] Package check error: cannot extract package

2015-05-07 Thread Uwe Ligges
, or if not)? 3. How can I fix this? By telling us. :-) Seems to be a hicc up of the CRAN machine that builds the bianries. Will work on it. Should be resolved within a day or so. Best, Uwe Ligges Thanks Sören __ R-devel@r-project.org mailing list

Re: [Rd] That 'make check-all' problem with the survival package

2015-05-16 Thread Uwe Ligges
Not sure why this goes to R-devel. You just could have asked the maintainer. Terry Therneau is aware of it and promised he will fix it. Best, Uwe Ligges On 16.05.2015 07:22, Hin-Tak Leung wrote: 'make check-all' for current R has been showing this error in the middle for a few

Re: [Rd] MetaCran website v1.0.0-alpha

2015-05-24 Thread Uwe Ligges
ran.r-project.org/mirrors.html when pointing to CRAN. Best, Uwe Ligges On 24.05.2015 11:44, Rainer M Krug wrote: Gábor Csárdi writes: Dear All, [ I was wondering if this should have gone to the new mailing list. Maybe. ] As some of you maybe know from my earlier posts, I am building a simpl

Re: [Rd] MetaCran website v1.0.0-alpha

2015-05-25 Thread Uwe Ligges
On 25.05.2015 02:29, Gábor Csárdi wrote: On Sun, May 24, 2015 at 7:40 PM, Uwe Ligges mailto:lig...@statistik.tu-dortmund.de>> wrote: Thanks for letting us know about the new website. Some comments: - Download statistics: Where are they from? CRAN does not monitor dow

Re: [Rd] BitSet equivalent? Java code usable?

2011-10-08 Thread Uwe Ligges
ly but it would greatly simplify the task for me. See the rJava package. Best, Uwe Ligges Regards, Joachim Harloff __ R-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-devel _

Re: [Rd] how to make a true binary package?

2011-10-11 Thread Uwe Ligges
ons of the same package, so that i could load either of them? I am sure this could be done, just cannot find this in docs. You can install each version of the package into a separate library. Uwe Ligges I am using R 2.12.1 on Red Hat Lunix -- View this message in context: http://r

Re: [Rd] NOTE: unstated dependencies in examples

2011-10-13 Thread Uwe Ligges
I looked at the code and since this is not that trivial to change, I think we can well live with typing grep -r gplots ./man which is not too hard to run on the source package, I believe. Best wishes, Uwe On 13.10.2011 03:00, Yihui Xie wrote: You have this in Jevons.Rd: # show as balloon

Re: [Rd] NOTE: unstated dependencies in examples

2011-10-14 Thread Uwe Ligges
declare that. Sure, you can put all sorts of conditional tests into your code so that it avoids using the new facility in older versions, but isn't it simpler to just declare the dependency and avoid cluttering your code with those tests? Indeed, I think you should update your package and

Re: [Rd] NOTE: unstated dependencies in examples

2011-10-14 Thread Uwe Ligges
On 14.10.2011 18:52, Jari Oksanen wrote: On 14/10/11 19:00 PM, "Uwe Ligges" wrote: On 14.10.2011 16:15, Duncan Murdoch wrote: On 14/10/2011 10:10 AM, Jari Oksanen wrote: On 14/10/11 16:26 PM, "Duncan Murdoch" wrote: On 14/10/2011 9:18 AM, Jari Oksanen wrote:

Re: [Rd] NOTE: unstated dependencies in examples

2011-10-14 Thread Uwe Ligges
Windows. Therefore, I believe (I haven't seen the package) this discussion is meaningless anyway. Best, Uwe Ligges Nick Sabbe -- ping: nick.sa...@ugent.be link: http://biomath.ugent.be wink: A1.056, Coupure Links 653, 9000 Gent ring: 09/264.59.36 -- Do Not Disapprove _

Re: [Rd] .onLoad failing because could not find function "loadMethod"

2011-10-15 Thread Uwe Ligges
On 15.10.2011 02:53, Hervé Pagès wrote: On 11-10-14 05:47 PM, Hervé Pagès wrote: On 11-10-14 05:46 PM, Hervé Pagès wrote: [...] I've put 2 toy packages here that illustrate the problem: https://rapidshare.com/files/4043144391/pkgA_1.0.tar.gz https://rapidshare.com/files/1959508331/pkgB_1.0

Re: [Rd] .onLoad failing because could not find function "loadMethod"

2011-10-15 Thread Uwe Ligges
and you are able to reproduce the check messages. You can avoid n-1 Warnings/Errors in the checks by adding library("methods") in your .onLoad function, but of course you cannot get rid of the check that checks that the package can be loaded with the base namespace only. Best, Uwe Ligg

Re: [Rd] RFC: 'igraph' package update and backward compatibility

2011-10-20 Thread Uwe Ligges
were/are *not* intended for "production use". Best, Uwe Ligges __ R-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-devel __ R-devel@r-project.org mailing

Re: [Rd] Question about multiple-precision floating-point computations

2011-10-29 Thread Uwe Ligges
See, for example, package Rmpfr. Uwe Ligges On 29.10.2011 05:33, Yi Zhao wrote: Dear all, I am trying to programming a R package in C++, which need calculate the number 25 digits after the dot. Is there any package offer this function? I am still a beginner. Please help me! Thanks a lot

Re: [Rd] Question about how to compile .zip for Windows

2011-10-29 Thread Uwe Ligges
doesn't install the MPFR. I want to try to compile it directly on my computer. I stuck here. See the examples in package Rmpfr. You can make use of the same setting on winbuilder. Uwe Ligges Thanks Yi Zhao [[alternative HTML version deleted]] __

Re: [Rd] R CMD check and error in an \Sexpr in an Rd file

2011-10-31 Thread Uwe Ligges
included in this version? I will try now with R-rc_2011-10-27_r57452.tar.gz. Try R-2.14.0, it is already released. Or R-devel. Best, Uwe Ligges Renaud On 28/10/2011 17:25, Duncan Murdoch wrote: On 28/10/2011 10:53 AM, Duncan Murdoch wrote: On 28/10/2011 10:49 AM, Renaud Gaujoux wrote: >

Re: [Rd] R CMD check and error in an \Sexpr in an Rd file

2011-10-31 Thread Uwe Ligges
e/R-2/R-2.14.0.tar.gz Uwe Ligges On 31/10/2011 14:19, Uwe Ligges wrote: On 31.10.2011 13:13, Renaud Gaujoux wrote: Thank you Duncan. I tried with: * using R version 2.14.0 RC (2011-10-24 r57417) * using platform: x86_64-unknown-linux-gnu (64-bit) But I still get the errors for verbatim mult

Re: [Rd] Error in gzfile(file, mode) when checking a package with rcmd check

2011-11-06 Thread Uwe Ligges
On 06.11.2011 18:46, Patrick Giraudoux wrote: Following Uwe Ligges' instructions (off list) I have updated Duncan Murdoch's toolchain, with no effect. The trouble was solved when I moved the package to a directory with a shorter path (U:\Documents and Settings\pgiraudo\Bureau in

Re: [Rd] NAMESPACE file generation issue R 2.14.0 on Debian Squeeze

2011-11-08 Thread Uwe Ligges
packages or - you belive you are using R-2.14.0 but you are actually using an older version. Uwe ligges On 08.11.2011 10:49, Art Eschenlauer wrote: When I did install.packages("sqldf") on Windows and Mac OSX, it installed fine. However, when I did it on my Debian Squeeze box under R

Re: [Rd] NAMESPACE file generation issue R 2.14.0 on Debian Squeeze

2011-11-08 Thread Uwe Ligges
On 08.11.2011 16:31, Gabor Grothendieck wrote: 2011/11/8 Uwe Ligges: I think many people like to help, but we cannot: You say you are under R-2.14.0 and whn you R CMD INSTALL a package with that version of R, it does not have a NAMESPACE in the end? Then - your R installation is broken or

Re: [Rd] NAMESPACE file generation issue R 2.14.0 on Debian Squeeze

2011-11-08 Thread Uwe Ligges
On 08.11.2011 17:04, Gabor Grothendieck wrote: 2011/11/8 Uwe Ligges: On 08.11.2011 16:31, Gabor Grothendieck wrote: 2011/11/8 Uwe Ligges: I think many people like to help, but we cannot: You say you are under R-2.14.0 and whn you R CMD INSTALL a package with that version of R, it does

Re: [Rd] NAMESPACE file generation issue R 2.14.0 on Debian Squeeze

2011-11-08 Thread Uwe Ligges
On 08.11.2011 17:56, Gabor Grothendieck wrote: 2011/11/8 Uwe Ligges: On 08.11.2011 17:04, Gabor Grothendieck wrote: 2011/11/8 Uwe Ligges: On 08.11.2011 16:31, Gabor Grothendieck wrote: 2011/11/8 Uwe Ligges: I think many people like to help, but we cannot: You say you are under R

Re: [Rd] NAMESPACE file generation issue R 2.14.0 on Debian Squeeze

2011-11-08 Thread Uwe Ligges
On 08.11.2011 19:08, Gabor Grothendieck wrote: 2011/11/8 Uwe Ligges: On 08.11.2011 17:56, Gabor Grothendieck wrote: 2011/11/8 Uwe Ligges: On 08.11.2011 17:04, Gabor Grothendieck wrote: 2011/11/8 Uwe Ligges: On 08.11.2011 16:31, Gabor Grothendieck wrote: 2011/11/8 Uwe Ligges: I

Re: [Rd] NAMESPACE file generation issue R 2.14.0 on Debian Squeeze

2011-11-09 Thread Uwe Ligges
On 09.11.2011 13:52, Gabor Grothendieck wrote: 2011/11/8 Uwe Ligges: On 08.11.2011 19:08, Gabor Grothendieck wrote: 2011/11/8 Uwe Ligges: On 08.11.2011 17:56, Gabor Grothendieck wrote: 2011/11/8 Uwe Ligges: On 08.11.2011 17:04, Gabor Grothendieck wrote: 2011/11/8 Uwe Ligges

Re: [Rd] NAMESPACE file generation issue R 2.14.0 on Debian Squeeze

2011-11-09 Thread Uwe Ligges
On 09.11.2011 15:23, Gabor Grothendieck wrote: 2011/11/9 Uwe Ligges: On 09.11.2011 13:52, Gabor Grothendieck wrote: 2011/11/8 Uwe Ligges: On 08.11.2011 19:08, Gabor Grothendieck wrote: 2011/11/8 Uwe Ligges: On 08.11.2011 17:56, Gabor Grothendieck wrote: 2011/11/8 Uwe Ligges

Re: [Rd] cygwin R-2.14.0 build fail

2011-11-12 Thread Uwe Ligges
ther better off over on https://lists.sourceforge.net/lists/listinfo/cygwin-ports-general Or much simpler: use the native version. Uwe Ligges __ R-devel@r-project.org mailing list https://stat.ethz.ch/mailman/l

Re: [Rd] Including multiple third party libraries in an extension

2011-11-13 Thread Uwe Ligges
file is executed for each architecture. And why does R_ARCH start with a '/'? ;) It is typically used as part of a path's name. Uwe Ligges thanks again! Tyler Cheers, Simon [[alternative HTML version deleted]] _

Re: [Rd] Including multiple third party libraries in an extension

2011-11-14 Thread Uwe Ligges
On 14.11.2011 03:55, Tyler Pirtle wrote: On Sun, Nov 13, 2011 at 6:25 PM, Simon Urbanek wrote: On Nov 13, 2011, at 6:48 PM, Tyler Pirtle wrote: On Sun, Nov 13, 2011 at 7:27 AM, Uwe Ligges< lig...@statistik.tu-dortmund.de> wrote: On 13.11.2011 05:22, Tyler Pirtle wrote: On Sa

Re: [Rd] cygwin R-2.14.0 build fail

2011-11-17 Thread Uwe Ligges
ahead and tackle the problems, but don't distribute incorrectly working versions of R. Best, Uwe Ligges Regards Marco __ R-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-devel ___

Re: [Rd] cygwin R-2.14.0 build fail

2011-11-17 Thread Uwe Ligges
On 17.11.2011 12:33, marco atzeri wrote: On 11/17/2011 10:11 AM, Uwe Ligges wrote: Everybody in this discussion invested too much time on it already. If you want to provide cygwin support for others, go ahead and tackle the problems, but don't distribute incorrectly working versions

Re: [Rd] strange behavior from cex="*"

2011-11-19 Thread Uwe Ligges
On 18.11.2011 10:14, Patrick Burns wrote: Someone ambitious could find problems like this using random input testing like I talked about at useR last summer. http://www.burns-stat.com/pages/Present/random_input_test_annotated.pdf Testing graphics would be more labor intensive than the testing

Re: [Rd] Patched R build available today is missing some info (data and release number)

2011-11-21 Thread Uwe Ligges
umber? On the page http://cran.r-project.org/bin/windows/base/rpatched.html the release number is r0 as well. Cheers Joris Duncan Murdoch wrote yesterday he fixed this. So please just wait until the new binary is propagated to the master / mirrors. Uwe L

Re: [Rd] Case: package removed from CRAN, but not orphaned

2011-11-25 Thread Uwe Ligges
ricter policies to reduce the workload of CRAN maintainers. Best wishes, Uwe Ligges * Confidentiality Note: The information contained in this ...{{dropped:10}} __ R-devel@r-proj

Re: [Rd] Case: package removed from CRAN, but not orphaned

2011-11-25 Thread Uwe Ligges
On 25.11.2011 16:04, Rainer M Krug wrote: 2011/11/25 Uwe Ligges On 25.11.2011 11:56, Pfaff, Bernhard Dr. wrote: Dear R-Devel subscriber, I would like to raise a topic and ask for your advice, guidance. Today on R-help an issue with a certain package popped up that has been removed from

Re: [Rd] warning for inefficiently compressed datasets

2011-12-07 Thread Uwe Ligges
On 06.12.2011 23:28, Hervé Pagès wrote: Hi, Recently added to doc/NEWS.Rd: 'R CMD check' now gives a warning rather than a note if it finds inefficiently compressed datasets. With 'bzip2' and 'xz' compression having been available since R 2.10.0, there is no excuse for not using them. Why is

Re: [Rd] Unable to collate and parse R files with R CMD check

2011-12-07 Thread Uwe Ligges
means R cannot even parse the code. So try to source() each file in your ./R directory separately. You will find that at least one won't work. Uwe Ligges ^ ERROR: unable to collate and parse R files for package 'pkg' * removing 'C:/PROGRA~1/R/R-214~1.0/bin/x64/PKG~1.RCH/pkg

Re: [Rd] Problems in building a DLL in 64-bit Windows

2011-12-12 Thread Uwe Ligges
? If this is a typo: Is your OS 64 bit? Have you used the right compiler collection for making 64-bit code according to the manual? Best, Uwe Ligges file not recognized : File format not recognized collect2: ld returned 1 exit status How can I solve this? The problem is with R 2-14.0 and 2

Re: [Rd] Problems in building a DLL in 64-bit Windows

2011-12-12 Thread Uwe Ligges
ognize .../bin/x64/R.dll Sure, since a 32-bit compiler does not know about 64-bit binaries. Uwe Ligges (-L is overriden by R CMD SHLIB, it puts i386 in the end...) Once again, thank you for your suggestion, I'll give it a try. Rui Barradas Citando Prof Brian Ripley : What is R.ddl

Re: [Rd] Detecting typo in function argument

2011-12-12 Thread Uwe Ligges
This is valid syntax, so what should we check for?. Uwe On 12.12.2011 22:10, John C Nash wrote: With some chagrin after spending a couple of hours trying to debug a script, I realized I had typed in something like ans<-optimx(start, myfn, mygr, lower<-lo, upper=up) that is, the "<-" rather

Re: [Rd] problems with iconv

2011-12-13 Thread Uwe Ligges
follow the advice given there (for R-release in Section C.5), as Brian asked you already. If something is not clear enough, tell us what you do not understand. Saying that it does not work if you do not follow the advice is not helpful at all for people who try to help! Uwe Ligges -- View th

Re: [Rd] bug in sum() on integer vector

2011-12-14 Thread Uwe Ligges
On 14.12.2011 17:19, peter dalgaard wrote: On Dec 14, 2011, at 16:19 , John C Nash wrote: Following this thread, I wondered why nobody tried cumsum to see where the integer overflow occurs. On the shorter xx vector in the little script below I get a message: Warning message: Integer over

Re: [Rd] bug in sum() on integer vector

2011-12-14 Thread Uwe Ligges
"interesting" as parallel computation causes different summation orderings on sums of large numbers of items. JN On 12/14/2011 03:58 PM, Uwe Ligges wrote: On 14.12.2011 17:19, peter dalgaard wrote: On Dec 14, 2011, at 16:19 , John C Nash wrote: Following this thread, I wondered why no

Re: [Rd] DESCRIPTION Suggests entry help

2011-12-15 Thread Uwe Ligges
If it is only in the Suggests and you test for its existence before its usage, it should be OK. For old R versions my CRAN checks set the nvironment variable: _R_CHECK_FORCE_SUGGESTS_=FALSE Best, Uwe Ligges On 15.12.2011 19:53, Roebuck,Paul L wrote: How should the Suggests entry be written

Re: [Rd] latest Rtools missing "inconsolita.sty"

2011-12-17 Thread Uwe Ligges
On 17.12.2011 17:26, Spencer Graves wrote: On 12/17/2011 4:27 AM, Duncan Murdoch wrote: On 11-12-17 1:43 AM, Spencer Graves wrote: Hello: What do you suggest I do to overcome "LaTeX Error: File 'inconsolata.sty' not found", which I got running "R CMD check" on a package using Rtools I downl

Re: [Rd] Issues with building package with C src on windows [R CMD INSTALL ignoring makefile]

2011-12-19 Thread Uwe Ligges
ing R Extensions that tells you to write a Makefile.win which is used under Windows. Best, Uwe Ligges Thanks Jonathan __ R-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-devel ___

Re: [Rd] Why is the 64bit Windows version of package RSVGTipsDevice not available on CRAN?

2011-12-20 Thread Uwe Ligges
ooltips on each these points > invisible(sapply(1:7, function(x) + {setSVGShapeToolTip(title=paste("point", x)) + points(x+1, 8-x, cex=3, pch=1, col='black')})) > setSVGShapeToolTip(title="Text", desc="can have a tool tip too!") > text(x=4, y=9, la

Re: [Rd] adding packages R 2.14.0

2011-12-23 Thread Uwe Ligges
ults_Rcpp.html Please talk to the package maintainer in such a case. Will the packages not now available because available over time? ? How do I report/fix the compiling errors? Please talk to the package maintainer in such a case. Best, Uwe Ligges Thanks in advance! Roger -- View this mes

Re: [Rd] How to list package dependency on a Bioconductor package?

2012-01-03 Thread Uwe Ligges
orresponding platform / R version. Uwe Ligges Thank you! -Steve __ R-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-devel __ R-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-devel

Re: [Rd] Updated Windows toolchain

2012-01-10 Thread Uwe Ligges
On 10.01.2012 18:51, Dan Tenenbaum wrote: On Mon, Nov 28, 2011 at 11:56 PM, Prof Brian Ripley wrote: An updated toolchain is now being used for Windows' builds of R-devel: details are in the R-admin manual and at http://www.murdoch-sutherland.com/Rtools/ and http://www.stats.ox.ac.uk/pub/Rto

Re: [Rd] lubridate does not install on FreeBSD any more

2012-01-11 Thread Uwe Ligges
ious '/usr/local/lib/R/library/lubridate' Do you have any idea what is going on here? Yes: locked bindings cannot be changed in R-devel any more, and lubridate does that. The maintainer has been asked for an update already. Uwe Ligges Thanks in advance, Rainer Hurlin

Re: [Rd] Changed behaviour of 'R CMD INSTALL'

2012-01-11 Thread Uwe Ligges
s, among other, the line: --no-multiarchbuild only the main architecture or if you want to build and don't care about loading: --no-test-loadskip test of loading installed package Uwe Ligges Cheers, Berwin __ R-dev

Re: [Rd] importing S3 methods with importFrom

2012-01-11 Thread Uwe Ligges
This is a problem in the lmtest package: "lrtest.default" is exported as a function rather than declared as an S3method in its NAMESPACE. I am CCing the maintainer. For the meantime, you hav to import the default function explicitly, I believe. Best, Uwe Ligges On 10.01.

Re: [Rd] Copying objects prior to .Call

2012-01-11 Thread Uwe Ligges
On 11.01.2012 18:49, Simon Urbanek wrote: On Jan 11, 2012, at 12:08 PM, Taylor Arnold wrote: R-devel, I have noticed that making a copy of an object in R prior to using .Call on the original object can cause the C code to alter not only the object passed to it but also the copy in R. Plea

Re: [Rd] How to modify the start-up message

2012-01-15 Thread Uwe Ligges
those who provided the binary package for a source version. Uwe Ligges Thanks for your help. __ R-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-devel __ R-devel@r

Re: [Rd] checking complied code found 'abort'

2012-01-15 Thread Uwe Ligges
ignores. Best, Uwe Ligges On 13.01.2012 16:15, Zhu Wang wrote: Hello, The package cts on CRAN generated a note on some systems. For instance: checking compiled code ... NOTE File ‘/home/ripley/R/Lib32/cts/libs/cts.so’: Found ‘abort’, possibly from ‘abort’ (C) which can be found from the link

Re: [Rd] How to modify the start-up message

2012-01-16 Thread Uwe Ligges
the stuff. Best, Uwe Ligges Thanks, - Original Message - From: Uwe Ligges To: Ron Michael Cc: "r-devel@r-project.org" Sent: Monday, 16 January 2012 12:03 AM Subject: Re: [Rd] How to modify the start-up message On 12.01.2012 16:27, Ron Michael wrote: Hi all, I got a

Re: [Rd] Updated Windows toolchain

2012-01-18 Thread Uwe Ligges
these are the version you need for old versions of R that are included in the Rtools, but it has a third gcc in subdir gcc-4.6.3 which is the one you should have first in the path in order to use the new toolchain. Uwe Ligges (ii) There are various bug-fixes to the toolchain: notably x^n an

Re: [Rd] how to check all CRAN dependencies for my package, before submitting

2012-01-18 Thread Uwe Ligges
On 18.01.2012 09:28, Edzer Pebesma wrote: Suppose I'm author of a package on which quite a few other packages depend. When I submit to CRAN, I run R CMD check on it, Kurt does that too, and if things work out fine, it is accepted. When one or more of the packages that depend on it break because

Re: [Rd] Updated Windows toolchain

2012-01-19 Thread Uwe Ligges
For the records: This rsync infelicity has been solved in the meantime. Uwe Ligges On 19.01.2012 02:03, Dan Tenenbaum wrote: Hi Uwe, 2012/1/18 Uwe Ligges: On 18.01.2012 01:09, Dan Tenenbaum wrote: Hello, On Mon, Jan 9, 2012 at 12:28 AM, Prof Brian Ripley wrote: CRAN Windows binary

Re: [Rd] Failure to get compactPDF to compact a pdf file

2012-01-25 Thread Uwe Ligges
On 24.01.2012 22:22, John Maindonald wrote: Quoting from the R-2.14.1 help page for compactPDF: " This by default makes use of 'qpdf', available fromhttp://qpdf.sourceforge.net/> (including as a Windows binary) and included with the CRAN Mac OS X distribution of R. If 'gs_cmd' is no

Re: [Rd] [R] x11() graphic device, displaying raster

2012-01-25 Thread Uwe Ligges
ion that is recent - it works for me. Uwe Ligges I first tried it with R 2.13.2 and raster version 1.9-64 (16-January-2012). Now I also installed the most recent version R 2.14.1 (Platform: i386-pc-mingw32/i386 (32-bit)) and raster version 1.9-64 (16-January-2012). But in both cases no success

Re: [Rd] Silently loading and Depends: versus NAMESPACE imports

2012-01-28 Thread Uwe Ligges
On 27.01.2012 15:57, Dirk Eddelbuettel wrote: On 12 January 2012 at 12:12, Hervé Pagès wrote: | Hi Dirk, | | On 01/11/2012 11:42 AM, Dirk Eddelbuettel wrote: |> |> R CMD check really hates it when my .onLoad() function contains |> suppressMessages(library(foo)) | | Note that you can alw

Re: [Rd] location of check.Renviron on Windows

2012-02-01 Thread Uwe Ligges
that supposed to be the user directory? Or is it some other directory? I have this _R_CHECK_FORCE_SUGGESTS_=false (have also tried FALSE) in C:\Users\username\.R ~ is proably "c:/Users/%USERNAME%/My Documents" (cannot remember exactly - on XP right now). Uwe Ligges I have al

Re: [Rd] Options for keeping files when package re-install or update.

2012-02-08 Thread Uwe Ligges
User defined files are not touched if you update a package *unless* you put it into the directory structure of the package, where a user defined file is not intended to be ... Uwe On 08.02.2012 01:02, 전희원 wrote: Hi! All I want to keep some file which user defined when re-installing or updat

Re: [Rd] Using custom R_LIBS with R CMD install

2012-02-08 Thread Uwe Ligges
On 07.02.2012 19:13, Hadley Wickham wrote: Hi all, Am I using the correct syntax to set a custom R_LIBS when running R CMD INSTALL from the command line? I get: R_LIBS=/Users/hadley/R-dev R CMD INSTALL aL3xa-rapport-08e68ca/ # Desktop : R_LIBS=/Users/hadley/R-dev R CMD INSTALL aL3xa-rapport-

Re: [Rd] Using custom R_LIBS with R CMD install

2012-02-08 Thread Uwe Ligges
On 08.02.2012 19:36, Hadley Wickham wrote: I wonder it works that far. It won't for me on Windows nor Linux, because system2 passes the whole thing shQuoted to the shell. Hence it is highly shell dependent what happens with the ill formed command. Well I was using the env argument to system2,

Re: [Rd] Using custom R_LIBS with R CMD install

2012-02-09 Thread Uwe Ligges
On 08.02.2012 21:05, Hadley Wickham wrote: 2012/2/8 Uwe Ligges: On 08.02.2012 19:36, Hadley Wickham wrote: I wonder it works that far. It won't for me on Windows nor Linux, because system2 passes the whole thing shQuoted to the shell. Hence it is highly shell dependent what happens

Re: [Rd] Task views

2012-02-11 Thread Uwe Ligges
On 11.02.2012 18:55, Patrick Burns wrote: On 11/02/2012 08:25, Hans W Borchers wrote: Vartanian, Ara indiana.edu> writes: All, I am looking for ... Why is it necessary over and over again to point to the Optimization Task View? ... Now it could be that people are not trying ve

Re: [Rd] Silently loading and Depends: versus NAMESPACE imports

2012-02-23 Thread Uwe Ligges
On 23.02.2012 06:40, Suraj Gupta wrote: Dirk - I'm having the same issue. Could you provide the details of your solution? By moving the startup message generation to .onAttach? Uwe Ligges On Sat, Jan 28, 2012 at 11:15 AM, Dirk Eddelbuettel wrote: On 28 January 2012 at 16:52

Re: [Rd] Silently loading and Depends: versus NAMESPACE imports

2012-02-24 Thread Uwe Ligges
On 24.02.2012 07:45, Hervé Pagès wrote: On 01/28/2012 08:15 AM, Dirk Eddelbuettel wrote: On 28 January 2012 at 16:52, Uwe Ligges wrote: | | | On 27.01.2012 15:57, Dirk Eddelbuettel wrote: |> |> On 12 January 2012 at 12:12, Hervé Pagès wrote: |> | Hi Dirk, |> | |> | On 01/1

Re: [Rd] function remains loaded in the search space after detaching the package

2012-02-24 Thread Uwe Ligges
as I would naively assume removing them when unloading a namespace seems more useful? Because there are no mechanisms implemented that keep the old information, i.e. before things got registered. - How do you remove them without having to restart R? That is not possible. Uwe L

Re: [Rd] Silently loading and Depends: versus NAMESPACE imports

2012-02-24 Thread Uwe Ligges
ou start it via suppressPackageStartupMessages( library("PerformanceAnalytics")) right? Uwe Ligges googoleVis shows: "Please read the Google Visualisation& Maps API Terms of Use before you use the package: ..." my .onAttach is pretty simple: .onAttach<- function(...) {

Re: [Rd] Silently loading and Depends: versus NAMESPACE imports

2012-02-24 Thread Uwe Ligges
suppressPackageStartupMessages**( library("PerformanceAnalytics"**)) # no message are shown search() # PerformanceAnalytics is now in the seach list beneath R_Global as expected OK, and can you please elaborate what is your problem finally? Uwe Ligges 2012/2/24 Uwe Ligges On 24.02.2012 18:02, S

Re: [Rd] Silently loading and Depends: versus NAMESPACE imports

2012-02-24 Thread Uwe Ligges
On 24.02.2012 18:52, Suraj Gupta wrote: My problem is the same problem that Dirk first asked about. I want to reduce the verbose noise. I want my Imports to not show any startup messages when I load my own package. Are you going to pull me? Use suppressPackageStartupMessages()! Uwe Ligges

Re: [Rd] Silently loading and Depends: versus NAMESPACE imports

2012-02-24 Thread Uwe Ligges
On 24.02.2012 18:53, Uwe Ligges wrote: On 24.02.2012 18:52, Suraj Gupta wrote: My problem is the same problem that Dirk first asked about. I want to reduce the verbose noise. I want my Imports to not show any startup messages when I load my own package. Are you going to pull me? Use

Re: [Rd] Unexpected behavior in factor level ordering

2012-02-25 Thread Uwe Ligges
e levels? Because xlevels was a character and you coerced it to a factor by calling data.frame(xf=xlevels) on it without telling anything about the orderiung, hence it got sorted lexicographically. Uwe Ligges __ R-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-devel

Re: [Rd] Replace back slashes with forward slashes?

2012-02-29 Thread Uwe Ligges
On 29.02.2012 19:19, Spencer Graves wrote: Hi, Simon: On 2/29/2012 10:04 AM, Simon Urbanek wrote: On Feb 29, 2012, at 12:37 PM, Spencer Graves wrote: Hello, All: What can people tell me about converting back slashes to forward slashes in character strings? That's it's trivially done wi

Re: [Rd] missing value break my if clause and crash my program

2012-03-01 Thread Uwe Ligges
it to some value. Uwe Ligges Thanks [[alternative HTML version deleted]] __ R-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-devel __ R-devel@r-project.org mail

Re: [Rd] make check fails for R.2.14.1 / SUSE Linux Enterprise Server 11 (x86_64) / intel compiler 11.1

2012-03-02 Thread Uwe Ligges
1. Have you followed the hints about configuration with Intel compilers in the R Installation and Administration manual? 2. Havbe you tried R-2.14.2 which is the current reelase version (since two days)? Uwe Ligges On 02.03.2012 14:10, Denis Croizé-Fillon wrote: Hi, On a linux (suse 11p1

Re: [Rd] "note: symbols.rds is not available"

2012-03-13 Thread Uwe Ligges
This is used for checking unsave symbols in compiled code (such as abort, exit or printf calls). For some reason you could not generate the symbols and hence a note. Therefore, this does not indicate a problem with the package. Uwe Ligges On 13.03.2012 17:52, Ben Bolker wrote: I&#x

Re: [Rd] How to install sqldf to R with version 2.10?

2012-03-17 Thread Uwe Ligges
ws on a cluster. The point is that the new sqldf may not be compatible with the old release of R - and I don't have such an old versionarounf for testing. Anyway: Go to CRAN and the package's archive, you will find old versions of the package that may work with the old R-2.10.x Uwe

Re: [Rd] merge bug fix in R 2.15.0

2012-03-17 Thread Uwe Ligges
Ligges $Rdevel --vanilla DF1 = data.frame(a=1:3,b=4:6) DF2 = data.frame(a=1:3,b=7:9) merge(DF1,DF2,by="a",suffixes=c("",".1")) Error in merge.data.frame(DF1, DF2, by = "a", suffixes = c("", ".1")) : there is already a column named ‘b’

Re: [Rd] Namespace dependency not required

2012-03-18 Thread Uwe Ligges
depends on the other one: It could not be loaded without having the other one installed now. Uwe Ligges [[alternative HTML version deleted]] __ R-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-devel

Re: [Rd] Namespace dependency not required

2012-03-18 Thread Uwe Ligges
On 18.03.2012 16:08, Patrick Giraudoux wrote: Le 18/03/2012 14:57, Uwe Ligges a écrit : On 18.03.2012 11:21, Patrick Giraudoux wrote: Hi, I am working at adding namespace to my packages, carefully following the doc "Writing R extensions" and some threads on the web. However I c

Re: [Rd] Namespace dependency not required

2012-03-18 Thread Uwe Ligges
On 18.03.2012 19:27, Patrick Giraudoux wrote: Le 18/03/2012 18:02, Uwe Ligges a écrit : On 18.03.2012 16:08, Patrick Giraudoux wrote: Le 18/03/2012 14:57, Uwe Ligges a écrit : On 18.03.2012 11:21, Patrick Giraudoux wrote: Hi, I am working at adding namespace to my packages, carefully

Re: [Rd] uncompressed saves warning

2012-03-21 Thread Uwe Ligges
On 21.03.2012 14:58, Michael Friendly wrote: [Env: Windows XP Pro / R 2.14.1 / StatET / R-Forge] A package of mine now generates a Warning under R 2.15.0 beta on CRAN checks: * checking data for ASCII and uncompressed saves ... WARNING Note: significantly better compression could be obtained

Re: [Rd] overriding "summary.default" or "summary.data.frame". How?

2012-03-21 Thread Uwe Ligges
Simple answer: Never ever override R base functionality. Best, Uwe Ligges On 20.03.2012 16:24, Paul Johnson wrote: I suppose everybody who makes a package for the first time thinks "I can change anything!" and then runs into this same question. Has anybody written out informatio

Re: [Rd] uncompressed saves warning

2012-03-23 Thread Uwe Ligges
On 22.03.2012 13:43, Michael Friendly wrote: On 3/21/2012 1:22 PM, Uwe Ligges wrote: What is the equivalent R command to compress these files in my project tree? Michael, if you use R CMD build --resave-data to build the tar archive, the versions therein are recompressed. But AFAIK, in

Re: [Rd] Missing Windows binary for R-2.15RC?

2012-03-24 Thread Uwe Ligges
On 24.03.2012 06:58, Daniel Nordlund wrote: -Original Message- From: Dan Tenenbaum [mailto:dtene...@fhcrc.org] Sent: Friday, March 23, 2012 5:48 PM To: Daniel Nordlund Cc: r-devel@r-project.org Subject: Re: [Rd] Missing Windows binary for R-2.15RC? On Fri, Mar 23, 2012 at 4:52 PM, Dani

Re: [Rd] Missing Windows binary for R-2.15RC?

2012-03-24 Thread Uwe Ligges
On 24.03.2012 19:31, Simon Urbanek wrote: On Mar 24, 2012, at 12:43 PM, Duncan Murdoch wrote: On 12-03-24 10:53 AM, Uwe Ligges wrote: On 24.03.2012 06:58, Daniel Nordlund wrote: -Original Message- From: Dan Tenenbaum [mailto:dtene...@fhcrc.org] Sent: Friday, March 23, 2012 5:48

Re: [Rd] CRAN policies

2012-03-27 Thread Uwe Ligges
Uwe Ligges Brian Ripley __ R-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-devel __ R-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-devel

Re: [Rd] CRAN policies

2012-03-27 Thread Uwe Ligges
On 27.03.2012 17:22, Paul Gilbert wrote: On 12-03-27 10:59 AM, Uwe Ligges wrote: On 27.03.2012 16:17, Paul Gilbert wrote: One of the things I have noticed with the R 2.15.0 RC and --as-cran is that the I have to bump the version number of the working copy of my packages immediately after

Re: [Rd] CRAN policies

2012-03-27 Thread Uwe Ligges
except by trial and error. Right, it needs human inspection to identify false positives. We believe most package maintainers are able to see if he or she is hit by such a false positive. Uwe Ligges __ R-devel@r-project.org mailing list https://st

Re: [Rd] CRAN policies

2012-03-27 Thread Uwe Ligges
for Notes (but we will if Warnings are not fixed), but we may not accept new submissions with significant Notes. Best, Uwe Ligges Is the process by which this happens documented somewhere? Jeff On 3/27/12 11:09 AM, "Gabor Grothendieck" wrote: 2012/3/27 Uwe Ligges: O

Re: [Rd] CRAN policies

2012-03-28 Thread Uwe Ligges
y files from examples and pollute, e.g., the owkring directory. Uwe Ligges Hadley __ R-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-devel

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