Re: [Rd] Problem with S4 inheritance: unexpected re-initialization?

2007-04-06 Thread cstrato
Dear Herve Although I am currently learning to use S4 classes, and thus I am probably not the person to comment on S4 classes, I completely agree with you. Coming from C++ (most of my code is C++), this is what I have intuitively expected, although I was not able to formulate it. I am glad that

Re: [Rd] [Bioc-devel] promptClass

2007-05-27 Thread cstrato
v(parent.frame())) { > -mname <- mlistMetaName(f, where) > +mname <- mlistMetaName(f, getPackageName(where)) > if(exists(mname, where = where, inherits = missing(where))) > get(mname, where) > else > > Seth Falcon <[EMAIL PR

[Rd] Inconsistent behavior of sQuote and dQuote

2007-10-14 Thread cstrato
Dear all When comparing sQuote("text") and dQuote("text") on MacOS X and Linux FC4 I get an inconsistent behavior (using the new release version R-2.6.0): sQuote: On Mac I get the correct result "'text'", but on FC4 the incorrect result "`text´". dQuote: On Mac I get the correct result "\"text\"

Re: [Rd] Inconsistent behavior of sQuote and dQuote

2007-10-14 Thread cstrato
to sQuote() and dQuote(), too, with default being ASCII behavior. However, this is only my personal opinion. Best regards Christian Marc Schwartz wrote: > On Sun, 2007-10-14 at 11:56 -0400, Duncan Murdoch wrote: > >> On 14/10/2007 10:44 AM, cstrato wrote: >> >>

[Rd] Problem with initialize of S4 classes

2007-12-23 Thread cstrato
alize gets also called in my package? > sessionInfo() R version 2.6.1 (2007-11-26) i386-apple-darwin8.10.1 locale: C attached base packages: [1] stats graphics grDevices utils datasets methods base other attached packages: [1] xps_0.4.0 loaded via a namespace (an

Re: [Rd] Problem with initialize of S4 classes

2007-12-24 Thread cstrato
; of arguments can be done (in the constructor) before > calling 'new' (I find this helpful, to avoid have to be too careful > when constructing initialize methods that deal with both the class and > classes derived from the class). > > Martin > > cstrato <[EMAIL PROT

[Rd] Vector binding on harddisk

2008-02-14 Thread cstrato
framework, from which you say: "it is hard to beat a framework that stores (contiguous) data that is optimized for reading and/or writing". Best regards Christian _._._._._._._._._._._._._._._._ C.h.i.s.t.i.a.n S.t.r.a.t.o.w.a V.i.e.n.n.a A.u.s.t.r.i.a e.m.a.i.l: cstrato

[Rd] Problem creating Makefile.win to build package using Visual C++

2008-03-02 Thread cstrato
/out:mypkg.dll *.obj Rdll.lib but it is not clear to me how to convert this example to my makefile? Thank you in advance Best regards Christian _._._._._._._._._._._._._._._._ C.h.i.s.t.i.a.n S.t.r.a.t.o.w.a V.i.e.n.n.a A.u.s.t.r.i.a e.m.a.i.l:cstrato at aon.at _._._._._._._._._._._._._._

[Rd] Problem with Makefile.win and environment variable

2008-03-21 Thread cstrato
Dear all, When porting my package to WinXP I have the following problem: I need to create an environment variable "MYVAR=c:\mypath" which I have saved in the control panel "System->My Computer" (under the `Advanced' tab). I have two files which need to access MYVAR: config.win, Makefile.win Wh

Re: [Rd] Problem with Makefile.win and environment variable

2008-03-21 Thread cstrato
nd any solution to this last problem. Do you have some other ideas which I could test? Thank you. Best regards Christian _._._._._._._._._._._._._._._._ C.h.i.s.t.i.a.n S.t.r.a.t.o.w.a V.i.e.n.n.a A.u.s.t.r.i.a _._._._._._._._._._._._._._._._ Prof Brian Ripley wrote: > On Fri, 21 Mar 2

Re: [Rd] Problem with Makefile.win and environment variable

2008-03-21 Thread cstrato
._._._._._._._._._._._._ Prof Brian Ripley wrote: >> cl /Ic:\root/include /MT /EHsc /Ox /D "MSVC" /D "WIN32" /c TMLMath.cxx > > will AFAIK not work when passed to the shell used (which is ash), and > in any case will not work for paths with spaces in. >

Re: [Rd] Problem with Makefile.win and environment variable

2008-03-21 Thread cstrato
the example you showed is the second. > > The shell you use to can Rcmd INSTALL is not relevant: our software > ensures that a POSIX shell is used for the make. (This is quite > different from nmake.) > > Thank you once again and "Happy Eastern" Best regards Christia

[Rd] Error in R CMD INSTALL on Windows XP using Rtools28

2008-12-05 Thread cstrato
amme/R/R-2.8.0/doc/html/packages.html' nicht erzeugen. Grund 'Permission denied' 2: In tools:::win.packages.html(.Library) : kann HTML Paketindex nicht aktualisieren installing help >>> Building/Updating help pages for package 'xps

Re: [Rd] Error in R CMD INSTALL on Windows XP using Rtools28

2008-12-05 Thread cstrato
pley wrote: This is a PATH error: you must have Rtools/bin before Windows system directories in your path. As the R-admin manual tells you explicitly fortune("WTFM") applies. On Fri, 5 Dec 2008, cstrato wrote: Dear all When trying to install my package on Windows XP on my Mac,

Re: [Rd] Error in R CMD INSTALL on Windows XP using Rtools28

2008-12-05 Thread cstrato
t; on my laptop with Rtools27 seems not to be necessary. May I suggest that this could be clarified in "R Installation and Administration" since there only the user variable "PATH" is mentioned (as far as I see). Thank you all one more time. Best regards Christian Dunc

Re: [Rd] Error in R CMD INSTALL on Windows XP using Rtools28

2008-12-05 Thread cstrato
://batchfiles.googlecode.com which automatically sets all environment variables for you including the PATH making it unnecessary to set your PATH or any environment variables. On Fri, Dec 5, 2008 at 4:06 PM, cstrato <[EMAIL PROTECTED]> wrote: Dear Duncan Thank you for this explicit explanation, you are

Re: [Rd] Error in R CMD INSTALL on Windows XP using Rtools28

2008-12-05 Thread cstrato
Prof Brian Ripley wrote: On Fri, 5 Dec 2008, cstrato wrote: Dear Duncan Thank you for this explicit explanation, you are right: When setting the system variable "Path" (as administrator) in addition to setting the user variable "PATH" (as user), now everything works f

Re: [Rd] Error in R CMD INSTALL on Windows XP using Rtools28

2008-12-06 Thread cstrato
seems to be a problem of my complicated setup and not a general problem, so adding this information may confuse other people. Best regards Christian Gabor Grothendieck wrote: On Sat, Dec 6, 2008 at 8:08 AM, Duncan Murdoch <[EMAIL PROTECTED]> wrote: cstrato wrote: Prof Brian

Re: [Rd] Error in R CMD INSTALL on Windows XP using Rtools28

2008-12-06 Thread cstrato
h to MiKTeX too (if you have it in a standard location). On Sat, Dec 6, 2008 at 9:41 AM, cstrato <[EMAIL PROTECTED]> wrote: Dear Duncan, dear Gabor, Thank you for this additional information and all these great tips. Setting the system path in the following way solved my problem: c:\Rtoo

Re: [Rd] Error in R CMD INSTALL on Windows XP using Rtools28

2008-12-07 Thread cstrato
I understand, thank you, Christian Gabor Grothendieck wrote: Any Windows batch script that uses the Windows find command. On Sat, Dec 6, 2008 at 1:08 PM, cstrato <[EMAIL PROTECTED]> wrote: Dear Gabor, Sorry, my mistake, here are my correct path settings: System Path: C:\Rtools

[Rd] How to add a slot to S4 class of an existing package?

2008-12-22 Thread cstrato
ility or special trick, which would avoid this error message? Are there other possibilities to access an additional data.frame from an existing class? Is there something like an "evolution" of S4 classes, which distinguishes the different im

Re: [Rd] How to add a slot to S4 class of an existing package?

2008-12-29 Thread cstrato
o section 6 of this: http://www.bioconductor.org/packages/2.4/bioc/vignettes/Biobase/inst/doc/BiobaseDevelopment.pdf Best wishes Wolfgang Wolfgang Huber EMBL-EBI http://www.ebi.ac.uk/huber cstrato wrote: Dear all, Since my package

[Rd] Compiler options for Makefile.win

2009-03-29 Thread cstrato
know why I can build my package w/o problems when using option /MT but not when using option /MD? As a note, I am using "R-2.9.0alpha-win32.exe" which I have downloaded today. Thank you in advance. Best regards Christian _._._._._._._._._._._._._._._._._._ C.h.r.i.s.t.i.a.n

Re: [Rd] Compiler options for Makefile.win

2009-04-02 Thread cstrato
of R users under Windows that make use of a non-gcc compiler and is reading this list is quite close to 0. Hence you will probably have to find it out yourself. Uwe Ligges cstrato wrote: Dear all, For certain reasons I have to compile the source code of my package on Windows XP using Mi

Re: [Rd] Compiler options for Makefile.win

2009-04-02 Thread cstrato
trying to load "library(xps)". Best regards Christian Gábor Csárdi wrote: On Sun, Mar 29, 2009 at 9:31 PM, cstrato wrote: [...] - - - - - - - - Created c:\home\Rabbitus\CRAN\xps\chm\xps.chm, 166,306 bytes Compression decreased file by 442,726 bytes. ** building package i

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