Re: [Rd] R 2.1.1 slated for June 20

2005-06-12 Thread Uwe Ligges
pment version for R-2.2.0. You want to download R-patched (to be R-2.1.1) instead. Uwe Ligges > Peter Dalgaard wrote: > > >>The next version of R will be released (barring force majeure) on June >>20th, with beta versions available starting Monday. >> >>Plea

Re: [Rd] Citation for R

2005-06-13 Thread Uwe Ligges
ed (not only) the missing citation of software ... (obviously political incorrectly, but I'll do so further on ;-)) Uwe Ligges > Gordon > > __ > R-devel@r-project.org mailing list > https://stat.ethz.ch/mailman/listinfo/r-devel _

Re: [Rd] motivation for setRepositories and chooseCRANmirror

2005-06-18 Thread Uwe Ligges
e.site file (which is intended for configurations that apply to all users): options(repos = c( CRAN = "http://umfragen.sowi.uni-mainz.de/CRAN";, CRANextra = "http://www.stats.ox.ac.uk/pub/RWin";)) Uwe Ligges __ R-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-devel

Re: [Rd] axTicks on a reverse ylog plot (PR#7973)

2005-07-05 Thread Uwe Ligges
? We had a problem with reversed log axis in R-2.1.0. There might be similar underlying code for grid() I was not aware of when suggesting a fix to make reversed log axis work for R-2.1.1 ... I'll take a closer look later this week. Uwe Ligges > -mt > > --please do not edit

Re: [Rd] .Rbuildignore {was: ... upgrading an R (WINDOWS) installation ..}

2005-07-06 Thread Uwe Ligges
Gabor Grothendieck wrote: > On 7/6/05, Martin Maechler <[EMAIL PROTECTED]> wrote: > >>>"Gabor" == Gabor Grothendieck <[EMAIL PROTECTED]> >>>on Wed, 6 Jul 2005 08:24:49 -0400 writes: >> >> ... >> ... >> >> Gabor> I have cleaned up my batch file

Re: [Rd] dyn.load in linux: missing libraries?

2005-07-06 Thread Uwe Ligges
Tyler Smith wrote: > ah, that's better. For an immediate fix I just changed .dll to .so, and No, change it to .Platform$dynlib.ext or do as already recommended: use library.dynam() Uwe Ligges > it appears to work perfectly. I will read through Writing R Extensions >

Re: [Rd] R_alloc problems in R v1.11

2005-07-06 Thread Uwe Ligges
d Hello(int *n) > { > int i,x; > for(i=1;1< *n ; i++) Do you mean i < *n ??? > { > Rprintf('salut!!!\n'); What about using double quotes? > } > x = (int *) R_alloc(5,sizeof(int)); What is this intended to do??? Uwe Ligges > } > > ///

Re: [Rd] upgrading an R installation to next versoin

2005-07-06 Thread Uwe Ligges
Gabor Grothendieck wrote: > On 6/30/05, Gabor Grothendieck <[EMAIL PROTECTED]> wrote: > >>On 6/30/05, J. Hosking <[EMAIL PROTECTED]> wrote: >> >>>Gabor Grothendieck wrote: >>> On 6/30/05, J. Hosking <[EMAIL PROTECTED]> wrote: >>> >>>... >>> >>> >I keep a separate directory ...\R\libr

Re: [Rd] .Rbuildignore {was: ... upgrading an R (WINDOWS) installation ..}

2005-07-06 Thread Uwe Ligges
Gabor Grothendieck wrote: > On 7/6/05, Uwe Ligges <[EMAIL PROTECTED]> wrote: > >>Gabor Grothendieck wrote: >> >> >>>On 7/6/05, Martin Maechler <[EMAIL PROTECTED]> wrote: >>> >>> >>>>>>>>>"Gabor&

Re: [Rd] R_alloc problems in R v1.11

2005-07-07 Thread Uwe Ligges
Kjell Konis wrote: > On 6 Jul 2005, at 22:06, Uwe Ligges wrote: > > >>Marie-Hélène Ouellette wrote: >> >> >>>I'm using the R v1.11 on Macintoch and I seem to have a problem >>>with the >>> >> >>There is no version 1.11, a

Re: [Rd] Hmisc_3.0-1.zip (PR#8005)

2005-07-12 Thread Uwe Ligges
[EMAIL PROTECTED] wrote: > Full_Name: Guy Horev > Version: 2.0.1 > OS: WinXP > Submission from: (NULL) (192.114.161.178) > > > It seems that the file Hmisc_3.0-1.zip in CRAN is corrupted, it should be 1.8M And it is, at least on the CRAN master in Vienna. Uwe Ligges

Re: [Rd] a possible bug in svmlight (PR#8012)

2005-07-18 Thread Uwe Ligges
bug tracking system of R. R Core cannot do anything re. contributed packages, and maintainers of contributed packages cannot mark the bug as "fixed" in the bug tracking system ... Instead, please notify the maintainer. Uwe Ligges > On 7/18/05, Gabor Grothendieck <[EMAIL PROTE

Re: [Rd] tree/graph data structure APIs?

2005-08-03 Thread Uwe Ligges
ourceforge.net/doc/graph.html > > Thanks! > Maybe the people working on graphical models have something you are looking for, see http://www.r-project.org/gR/. Have you looked at the "dynamicGraph" package? Uwe Ligges __ R-devel@r-proj

Re: [Rd] Memory leakage/violation?

2005-08-27 Thread Uwe Ligges
Thomas Lumley wrote: > I can't reproduce this on R2.2.0dev on Windows XP (in a few hundred > tries), or running under Valgrind on AMD64 Linux (in four or five tries). Cannot reproduce either (using R-2.1.1 and an older version of R-devel, though). Maybe a compiler issue? Henrik, do you use exact

Re: [Rd] error in apply help file? (PR#8118)

2005-09-01 Thread Uwe Ligges
code and do not need to read R-devel mails."??!). Hence, I'd like to complain in this case. Uwe Ligges > The apply() Help file says > "... > If the calls to FUN return vectors of different lengths, apply returns a > list of length dim(X)[MARGIN]. " > >

Re: [Rd] R CMD check and interfacing packages

2005-09-03 Thread Uwe Ligges
he license and the requirements for linking against it etc Uwe Ligges > Thanks. > > __ > R-devel@r-project.org mailing list > https://stat.ethz.ch/mailman/listinfo/r-devel __ R-devel@r-pr

Re: [Rd] Install packages to non-default lib on Windows

2005-09-08 Thread Uwe Ligges
te d:/biocbld/R-devel/doc/html/search/index.txt: permission denied I was also annoyed about this point a couple of times. But what are possible solutions? - not updating indices at all? - provide a switch such as --no-indices for the R CMD tools? - ...? short time workaround: simply give users write acc

Re: [Rd] \dontshow

2005-09-10 Thread Uwe Ligges
ecks/example runs: \dontrun{} Examples NOT displayed but executed during checks/example runs: \dontshow{} Examples NOT displayed and NOT executed during checks/example runs: simply don't type them anywhere ;-) Best, Uwe Ligges > > _

Re: [Rd] R.version.string (Re: MikTeX will be assumed in R 2.2.0 in Windows)

2005-09-10 Thread Uwe Ligges
>>You can get the revision number from the startup banner if you download >>a binary build. >> >>Duncan Murdoch >> >> > > > I normally document what version I am using by displaying R.version.string. > If R.versio

Re: [Rd] Issue tracking in packages [was: Re: [R] change in, read.spss, package foreign?]

2005-09-10 Thread Uwe Ligges
sses 600 for each repository... Uwe Ligges __ R-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-devel

[Rd] contributed Windows binary packages for R-2.2.0 alpha

2005-09-12 Thread Uwe Ligges
CRAN master in a few hours). Maintainers of packages that produce an ERROR now and have not produced an ERROR before have just been notified by automatical generated messages. All others might want to check whether there is a WARNING for their packages. Best, Uwe Ligges

Re: [Rd] as.Date() , feature or bug?

2005-09-14 Thread Uwe Ligges
> as.Date("6971-01-01") [1] "1970-01-01" So we cannot represent more than 5000 years into the future, roughly speaking. *Guess* the problem is that we need more than 4 digits for +/- 5000 years (sum=1). Uwe Ligges > Bo. > >

Re: [Rd] as.Date() , feature or bug?

2005-09-14 Thread Uwe Ligges
ate and I do not (yet) see the reason why Date cannot. But I have no time to dig deeper (at least not this week). Uwe Ligges > Bo > > __ > R-devel@r-project.org mailing list > https://stat.ethz.ch/mailman/listinfo/r-devel

Re: [Rd] List of languages supported

2005-09-18 Thread Uwe Ligges
s into which the manuals have been translated The corresponding web page is CRAN/other-docs.html It contains links to the Japanese translations. I do not know of other translations. > I assume that locale support is OS-specific but that the above > are not. Yes. Uw

Re: [Rd] Lists and data frames (PR#8143)

2005-09-19 Thread Uwe Ligges
speaking about, e.g. by giving a chapter's/section's name. The statement on what is referred to page 27 in this thread is completly correct. Note that a list is nothing else than a vector of mode list which contains in each element a list of length one. Hence you *can* say mylist[1:2]

Re: [Rd] undocumented objects in a package

2005-09-23 Thread Uwe Ligges
uch appreciated! E.g. just make one simple help page with keyword "internal" with aliases for all the functions. You do not need to write exact documentation in this case. Uwe Ligges > Best, > Andy > > Andy Liaw, PhD > Biometrics Research PO Box 2000, RY33-300

Re: [Rd] bug in gsub with perl=TRUE (PR#8164)

2005-09-30 Thread Uwe Ligges
hs ago ... Uwe Ligges > OS: Linux toad 2.6.9 #4 SMP Mon Feb 21 16:20:16 GMT 2005 x86_64 AMD > Opteron(tm) Processor 848 AuthenticAMD GNU/Linux > Submission from: (NULL) (129.67.46.247) > > > gsub with perl=TRUE does not work properly. It pads/truncates the resulting > st

Re: [Rd] MiKTeX/yap/Ghostcript issues with R-generated postscript

2005-10-11 Thread Uwe Ligges
inux. > > I'm using yap from MiKTeX 2.4 with the "most popular" installation option. > Hmmm, has not happened for me within the last couple of years I was using R + MikTeX 2.4 ... Can you specify a reproducible example for the R code that produces that PostScript file

Re: [Rd] rgl package demo causes R memory corruption under Windows

2005-10-13 Thread Uwe Ligges
Dominick Samperi wrote: > Hello, > > Running the rgl demo package (demo(rgl)) causes memory corruption when > used with > R 2.2.0 under Windows. I tested on two Windows systems: Windows 2000 and > Windows XP. > > When you terminate R after running the demo you get a message about the > applic

Re: [Rd] Installing R-2.2.0 package

2005-10-13 Thread Uwe Ligges
on manually (this is the only way I figured out how not to remove 00LOCK automatically)? Uwe Ligges > > Much thanks!!! > - > David P Dean > Research Informatics > PGRD Groton Labs > (860)-441-5053 > [EMAIL PROTECTED] > -

Re: [Rd] Installing R-2.2.0 package

2005-10-13 Thread Uwe Ligges
Paul Gilbert wrote: > > > Uwe Ligges wrote: > >> Dean, David P wrote: >> >> >> >>> Dear list, >>> >>> I've just installed R-2.2.0 under Solaris and have a question about >>> installing packages. If a package fails

Re: [Rd] expm1, R-2.2.0 and Windows

2005-10-14 Thread Uwe Ligges
Prof Brian Ripley wrote: > On Fri, 14 Oct 2005, [UTF-8] Göran Broström wrote: > >> A user of 'eha' told me that it failed to load in R-2.2.0 on >> Windows,and ideed, I checked and it fails with the error message >> "Theprocedure entry point expm1 could not be located in the dynamic >> linkliba

Re: [Rd] Matrix (PR#8321)

2005-11-18 Thread Uwe Ligges
not cause any problems. I think Cougar Lawrence has to tell us what "do not load" means, i.e. his setup of packages and libraries, his call to load Matrix as well as the error message. Uwe Ligges > You'll have to be more explicit about "will not load". >

Re: [Rd] problem with \eqn (PR#8322)

2005-11-18 Thread Uwe Ligges
; See the manual "Writing R >>Extensions". > > > Forgive me for not reading R-ext carefully, but Ross's Rd code is > still "obviously" wrong in the lights of the two-argument \eqn: > (really doesn't differ from the 1-arg interpretaion of \eqn) > >

Re: [Rd] winMenuAdd

2005-11-23 Thread Uwe Ligges
ethods" "stats" "graphics" "grDevices" "utils" "datasets" > [7] "base" This seems to be a bug introduced in R-patched (and R-devel). R-2.2.0 release correctly reports: Error in winMenuAdd(menuname, NULL, NULL) :

Re: [Rd] png support for R 2.2.1 (PR#8425)

2005-12-22 Thread Uwe Ligges
e found by R's configure scripts (e.g. into standard locations). 5. Run R's ./configure and check the last lines of the output, png support should be mentioned, if not, check what ./configure told you at the point where it looked for libpng. Uwe Ligges > Sylvain > > _

Re: [Rd] cygwin and tar -- still?

2005-12-25 Thread Uwe Ligges
ster with > this particular minutiae. Could the script that builds the package be fixed? > Is it broken? If it's not broken, what's with the cygdrive stuff? why does > the entire path need to be there? > > Is the tar that'

Re: [Rd] Acknowledgments in package documentation

2005-12-30 Thread Uwe Ligges
icense applies different from the rest of the package, document it in thge License field of DESCRIPTION. You may also mention the other "author" in the DESCRIPTION file. All details on the author should go into the corresponding Rd file. Uwe Ligges > Thanks in advance, > >

Re: [Rd] Minumum memory requirements to run R.

2006-01-21 Thread Uwe Ligges
Liaw, Andy wrote: > From: Kjetil Brinchmann Halvorsen > >>Prof Brian Ripley wrote: >> >>>Quite a while back we set the goal of running R in 16Mb >> >>RAM, as people (I >> >>>think Kjetil) had teaching labs that small. >> >>It's a while since I actually har R used on such small >>machines, I th

Re: [Rd] an unpleasant interaction of environments and generic functions

2006-01-31 Thread Uwe Ligges
? > Maybe sys.source("file", 2)... Seems to work! I'd suggest to dyn.load() the .so and source() the code during early development. So you do not need to R CMD INSTALL the _*package*_ into a library. Uwe Ligges __ R-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-devel

Re: [Rd] Typos in ?regex

2017-12-29 Thread Uwe Ligges
Thanks, fixed in R-devel and R-patched. Best, Uwe Ligges On 22.12.2017 15:28, Korpela Mikko (MML) wrote: I found three little typos in the ?regex manual. Apologies for the lack of a diff, as the utility is not (yet) installed on this machine. 1. "There is a also" should probably

Re: [Rd] R CMD check warning about compiler warning flags

2018-01-03 Thread Uwe Ligges
with each commit (With the possibility to reverse changes), and not verbose e-mails. That works well with svn, and we have the sequential labels which are e.g. important for bisecting changes. I do not see how I can find this out with git easily. Best, Uwe Ligges Juan I strongly disagree

Re: [Rd] bugzilla issues

2018-01-26 Thread Uwe Ligges
Simon, can you take a look, please? Best, Uwe On 26.01.2018 01:41, Ben Bolker wrote: tl;dr is the R bug tracker down or am I being an idiot? Help please ... I decided I would follow up on https://stat.ethz.ch/pipermail/r-devel/2018-January/075410.html (reporting/suggesting a pat

Re: [Rd] CRAN indices out of whack (for at least macOS)

2018-01-31 Thread Uwe Ligges
Thanks, Uwe On 31.01.2018 20:08, Simon Urbanek wrote: Dirk, yes, thanks, the edge server that serves the Mac binaries to CRAN has run out of disk space (due to size of CRAN itself) so the sync was incomplete. It is fixed now -- you can try by using the macos master server as mirror: https://

[Rd] CRAN incoming services and winbuilder down Mar 9-10

2018-03-08 Thread Uwe Ligges
Dear list, due to a full power shutdown in the relevant building at TU Dortmund University we have to shut down winbuilder and the CRAN incoming check service from Mar 9, 5pm CET to Mar 10, 5pm CET Best, Uwe Ligges (CRAN team) __ R-devel@r

Re: [Rd] Base R examples that write to current working directory

2018-03-30 Thread Uwe Ligges
On 30.03.2018 00:08, Duncan Murdoch wrote: On 29/03/2018 5:23 PM, Hadley Wickham wrote: Hi all, Given the recent CRAN push to prevent examples writing to the working directory, is there any interest in fixing base R examples that write to the working directory? A few candidates are the graphi

Re: [Rd] Library lib.loc Option Ignored for Dependencies

2018-07-25 Thread Uwe Ligges
you may want to try some devekopment version of one package agaiunst release versions of the others. This is the purpose of the above: take spam from ~lib and the other from .libPath(). Best, Uwe Ligges Martin > On 07/21/2018 12:34 PM, Martin Maechler wrote: >>>>&

Re: [Rd] Library lib.loc Option Ignored for Dependencies

2018-07-25 Thread Uwe Ligges
equired by ‘statistics’ The latest version of the statistics package is loaded, but the directory of latest packages is ignored by R when it considers the package dependency. See my other mail, I think this is epctected, why don't youi set the .libPaths() correctly? Nor is this self contained a

[Rd] CRAN incoming queue closed from Sep 1 to Sep 9

2018-08-14 Thread Uwe Ligges
Dear developers, the CRAN incoming queue will be closed from Sep 1 to Sep 9. Hence package submissions are only possible before and after that period. Best, Uwe Ligges (for the CRAN team) __ R-devel@r-project.org mailing list https://stat.ethz.ch

[Rd] CRAN incoming queue closed from Dec 21 to Jan 02

2018-12-17 Thread Uwe Ligges
Dear package developers, the CRAN incoming queue will be closed from Dec 21, 2018 to Jan 02, 2019. Hence package submissions are only possible before and after that period. Best, Uwe Ligges (for the CRAN team) __ R-devel@r-project.org mailing list

[Rd] CRAN incoming queue closed from Aug 09 to Aug 18

2019-08-05 Thread Uwe Ligges
Dear package developers, the CRAN incoming queue will be closed from Aug 09, 2019 to Aug 18, 2019. Hence package submissions are only possible before and after that period. CRAN maintainance work and some work on a possibly forthcoming Windows toolchain will be pushed forward. Best, Uwe

Re: [Rd] CHM help does not find help docs in package stats

2010-06-18 Thread Uwe Ligges
libraries where you have installed you package and the otehrs, knowing if these are network paths or local storage, ..... Uwe Ligges Thanks + BR, Thorn -Original Message----- From: Uwe Ligges [mailto:lig...@statistik.tu-dortmund.de] Sent: samedi 12 juin 2010 18:21 To: Thaler,Thorn,LAUSAN

Re: [Rd] format: different S4 behavior in a package

2010-06-23 Thread Uwe Ligges
There is not a single definition of formatMe() in your message, therefore nothing works for me, not even the very first version... Best, Uwe Ligges On 23.06.2010 09:16, Daniel Murphy wrote: R-Devel-ers: I have an S4 method that simply formats an object: setGeneric("formatMe",

Re: [Rd] Problem with dyn.load() under Windows 64bit at CRAN

2010-06-30 Thread Uwe Ligges
Dominick, your messages are all in my Inbox, I just have not yet found the time to look in more detail. On 30.06.2010 15:44, Dominick Samperi wrote: The package cxxPack builds without problems at CRAN under all OS's except Windows 64bit, and in the case of Windows 64bit there is a problem in

Re: [Rd] Problem with dyn.load() under Windows 64bit at CRAN

2010-07-02 Thread Uwe Ligges
On 02.07.2010 16:10, Dominick Samperi wrote: 2010/6/30 Uwe Ligges On 30.06.2010 15:44, Dominick Samperi wrote: Another odd thing about this is that everything worked under Windows 64bit before the changes were made to serialize the build of packages that depend on each other. That&#

Re: [Rd] CRAN updates?

2010-07-29 Thread Uwe Ligges
On 27.07.2010 22:15, Simon Urbanek wrote: On Jul 27, 2010, at 9:56 AM, Dominick Samperi wrote: It appears that after a package is updated the CRAN binaries for some OS's are built automatically and shortly after the update, while other OS's are not updated for some time (weeks in some cases)

Re: [Rd] R CMD check - "there is no package called"

2010-07-29 Thread Uwe Ligges
On 26.07.2010 02:00, Simon Urbanek wrote: On Jul 24, 2010, at 9:02 AM, John Hendrickx wrote: I'm trying to update my "perturb" package to get rid of some small warning messages. The examples in "perturb" use the "Duncan" dataset from the "car" package and I have "car" installed in R. But whe

Re: [Rd] Telling R CMD check where to find libraries

2010-07-29 Thread Uwe Ligges
in this directory as well, which I do not like either (this directory should contain only stable packages and not packages which are still under construction). So which possibilities do I have? Set the environment variable R_LIBS to point to that library. Uwe Ligges BR Thorn _

Re: [Rd] [R] Problems building own package (Error: "package has been build before R-2.10.0")

2010-08-17 Thread Uwe Ligges
being build before version R-2.10.0 and tells me to rebuild it. So the R that is in your PATH is < 2.10.x Change your PATH and add the R version your are actually working with.... Uwe Ligges Could this possibly be due to the fact that I have multiple R versions installed (this also inclu

Re: [Rd] [R] Problems building own package (Error: "package has been build before R-2.10.0")

2010-08-17 Thread Uwe Ligges
Then, you have the package installed under another libarry that is first on your search path. Uwe Ligges On 17.08.2010 22:07, Janko Thyson wrote: -Ursprüngliche Nachricht- Von: Uwe Ligges [mailto:lig...@statistik.tu-dortmund.de] Gesendet: Dienstag, 17. August 2010 22:00 An: Janko

[Rd] winbuilder offline / CRAN windows binaries

2010-09-06 Thread Uwe Ligges
Dear all, the winbuilder service as well as the build system for new / updated CRAN windows binaries will be offline for a day or two. I hope to get it online as soon as possible. Best wishes, Uwe Ligges __ R-devel@r-project.org mailing list https

Re: [Rd] winbuilder offline / CRAN windows binaries

2010-09-06 Thread Uwe Ligges
On 06.09.2010 20:04, Uwe Ligges wrote: Dear all, the winbuilder service as well as the build system for new / updated CRAN windows binaries will be offline for a day or two. I hope to get it online as soon as possible. which could be reduced to 30 minutes. :-) Uwe Best wishes, Uwe

Re: [Rd] R forge : svn + ssh without key

2010-09-13 Thread Uwe Ligges
Works for me, I guess you do not have an appropriate ssh connected to your svn client. Perhaps better ask such questions on the R-forge platform? Best, Uwe Ligges On 24.08.2010 15:56, christophe.genolini wrote: Hi the list, I am trying to use R forge. I created an account. I put my project

Re: [Rd] value returned by by()

2010-09-14 Thread Uwe Ligges
It returns a list with athe class attribut set to "by", just use: x <- by(.) unclass(x) Uwe Ligges On 14.09.2010 00:11, Seb wrote: Hi, I noticed that by() returns an object of class 'by', regardless of what its argument 'simplify' is. ?by says that it

Re: [Rd] More strange R CMD build/check errors on Windows

2010-09-14 Thread Uwe Ligges
On 12.09.2010 12:10, Hervé Pagès wrote: Hi Peter, On 09/12/2010 01:51 AM, Peter Dalgaard wrote: On 09/12/2010 08:10 AM, Hervé Pagès wrote: ... AFAICT those problems were never seen before (i.e. with R< 2.12). They show up randomly everyday for a small number of packages (between 10 and 20 o

Re: [Rd] value returned by by()

2010-09-15 Thread Uwe Ligges
On 14.09.2010 20:50, Seb wrote: On Tue, 14 Sep 2010 12:02:04 +0200, Uwe Ligges wrote: It returns a list with athe class attribut set to "by", just use: x<- by(.) unclass(x) Thanks Uwe, however, that still returns an array when using the data.frame method for by(): R>

Re: [Rd] S3 method for package listed in suggest/enhance

2010-09-15 Thread Uwe Ligges
On 01.09.2010 17:38, Hadley Wickham wrote: Hi all, The profr package provides a method for displaying its output with ggplot: ggplot.print. You don't need this ggplot2 to use profr, so ggplot2 is listed under enhances in the DESCRIPTION file. If I have just S3method(ggplot, profr) in my NAME

Re: [Rd] value returned by by()

2010-09-15 Thread Uwe Ligges
On 15.09.2010 15:00, Seb wrote: On Wed, 15 Sep 2010 11:29:23 +0200, peter dalgaard wrote: On Sep 15, 2010, at 10:55 , Uwe Ligges wrote: On 14.09.2010 20:50, Seb wrote: On Tue, 14 Sep 2010 12:02:04 +0200, Uwe Ligges wrote: It returns a list with athe class attribut set to &qu

Re: [Rd] a small suggestion for improving the building of packages

2010-09-15 Thread Uwe Ligges
On 29.08.2010 22:34, Kyle Matoba wrote: All, I just finished the process of build a package for the first time and found it characteristically (for R) very straightforward and well documented. Whenever I deal with open source software I always endeavor to finish the task I have in mind, and u

Re: [Rd] a small suggestion for improving the building of packages

2010-09-16 Thread Uwe Ligges
On 16.09.2010 20:18, Janko Thyson wrote: From: Uwe Ligges Date: Wed, 15 Sep 2010 15:23:01 +0200 On 29.08.2010 22:34, Kyle Matoba wrote: All, I just finished the process of build a package for the first time and found it characteristically (for R) very straightforward and well documented

Re: [Rd] Matrix install fails because of defunct save in require

2010-09-17 Thread Uwe Ligges
On 17.09.2010 16:04, Thomas Petzoldt wrote: Dear R-Devel, I've just tried to compile the fresh R-devel and found that the install of package Matrix failed: - ** help *** installing help indices ** building package indices ... Error in require(Matrix

Re: [Rd] some problems reported in 00check.log

2010-09-17 Thread Uwe Ligges
ject.name.Rd': object.name This means you cited the help page itself? I think you need to tell us the alias(es) you used as well as the purpose of this one. I don't think that I will have use the name of my package. Why is this related? Best wishes, Uwe Ligge

Re: [Rd] Matrix install fails because of defunct save in require

2010-09-17 Thread Uwe Ligges
On 17.09.2010 19:54, Berwin A Turlach wrote: G'day Uwe, On Fri, 17 Sep 2010 19:22:04 +0200 Uwe Ligges wrote: On 17.09.2010 16:04, Thomas Petzoldt wrote: Dear R-Devel, I've just tried to compile the fresh R-devel and found that the install of package Mat

Re: [Rd] some problems reported in 00check.log

2010-09-18 Thread Uwe Ligges
On 17.09.2010 20:15, carol white wrote: Thank you for your reply. --- On Fri, 9/17/10, Uwe Ligges wrote: From: Uwe Ligges Subject: Re: [Rd] some problems reported in 00check.log To: "carol white" Cc: r-devel@r-project.org Date: Friday, September 17, 2010, 10:45 AM regarding

Re: [Rd] some problems reported in 00check.log

2010-09-23 Thread Uwe Ligges
part of a binary package. A user can ask R to generate the manual or parts of it. The manual will so be generated by CRAN, for example. Uwe Ligges thanks, --- On Wed, 9/22/10, Prof Brian Ripley wrote: From: Prof Brian Ripley Subject: Re: [Rd] some problems reported in 00check.log To: "

Re: [Rd] some problems reported in 00check.log

2010-09-23 Thread Uwe Ligges
On 23.09.2010 18:16, carol white wrote: I used the 2.10.0 version My apologies, I actually meant R >= 2.10.0 and hence it is not a surprise. Best, Uwe Ligges --- On Thu, 9/23/10, Uwe Ligges wrote: From: Uwe Ligges Subject: Re: [Rd] some problems reported in 00check.log To: &qu

Re: [Rd] Function works when custom defined but not when part of a package

2010-09-28 Thread Uwe Ligges
I guess you forgot to import the relevant S4 functionality into your namespace. Best, Uwe On 28.09.2010 02:33, Mike Lawrence wrote: Hi folks, I'm not sure if this is a bug or not so I thought I'd check here first. I came across it while working on an update to my package where I try to get

Re: [Rd] bulding a package for Windows (path problem?)

2010-09-30 Thread Uwe Ligges
You need a recent version of the Rtools from Duncan Murdoch's web page. It includes the file.exe required for checking. Uwe Ligges On 30.09.2010 18:38, jgar...@ija.csic.es wrote: Thanks to Duncan Murdoch and Prof. Ripley for the previous answers. I apologize as I was not updated with

Re: [Rd] Rcmd build 32bit-only package on win7 64 bit platform?

2010-10-19 Thread Uwe Ligges
assoc, coxphf, eco, gcmrec, magnets, proj4, ripa, sampfling, survrec, yaml are only available for 32-bit installations. Best, Uwe Ligges Thanks for any advise, Hans-Peter __ R-devel@r-project.org mailing list https://stat.et

Re: [Rd] new.env does not recognize parents from subclassesof "environment"

2010-10-23 Thread Uwe Ligges
Looks like those ETH pages were nnot updated after the R-2.12.0 release (they do not show current R-tached / R-devel), hence CCing Martin Maechler. Best, Uwe Ligges On 22.10.2010 21:54, Vitally S. wrote: John Chambers writes: You need to update your version of R (r-devel or 2.12

Re: [Rd] new.env does not recognize parents from subclassesof "environment"

2010-10-23 Thread Uwe Ligges
On 23.10.2010 17:08, Uwe Ligges wrote: Looks like those ETH pages were nnot updated after the R-2.12.0 release (they do not show current R-tached / R-devel), hence CCing Martin Maechler. ... which I actually do now... Uwe Best, Uwe Ligges On 22.10.2010 21:54, Vitally S. wrote

Re: [Rd] new.env does not recognize parents from subclassesof "environment"

2010-10-23 Thread Uwe Ligges
On 23.10.2010 17:25, Martin Maechler wrote: 2010/10/23 Uwe Ligges: On 23.10.2010 17:08, Uwe Ligges wrote: Looks like those ETH pages were nnot updated after the R-2.12.0 release (they do not show current R-tached / R-devel), hence CCing Martin Maechler. ... which I actually do now

Re: [Rd] inst/ and hidden files/directories, especially inst/.svn/?

2010-11-03 Thread Uwe Ligges
Yes, ".svn" is special cased. Uwe Ligges On 02.11.2010 23:53, Henrik Bengtsson wrote: In Section 'Package subdirectories' of 'Writing R Extensions', it says about the inst/ directory that: "The contents of the inst subdirectory will be copied recurs

Re: [Rd] inst/ and hidden files/directories, especially inst/.svn/?

2010-11-04 Thread Uwe Ligges
On 03.11.2010 19:26, Henrik Bengtsson wrote: On Wed, Nov 3, 2010 at 9:50 AM, Uwe Ligges wrote: Yes, ".svn" is special cased. Good. Note that it does not seem to be the case for the *.zip archive, only for the *.tar.gz archive, as I showed. Henrik, I do not see how it can

Re: [Rd] installing dependencies: binary vs source

2010-11-13 Thread Uwe Ligges
On 12.11.2010 01:40, Hervé Pagès wrote: Hi, Installing from binaries on Windows: > install.packages("multtest") Warning: dependency 'Biobase' is not available trying URL 'http://cran.fhcrc.org/bin/windows/contrib/2.12/multtest_2.6.0.zip' Content type 'application/zip' length 1645590 bytes (1

Re: [Rd] trouble compiling RMySQL (and others) for 64 bit windows.

2010-11-13 Thread Uwe Ligges
I just found this obviously unanswered message: Yes, you need Rtools installed as described in the manual "R Installation and Administration" which explains what to do in more detail. It makes sense to upgrade to R-2.12.0 if you have not already done so. Best, Uwe Ligges On

Re: [Rd] Compiling R 2.12.0 from source: error (temp dir)

2010-11-18 Thread Uwe Ligges
TMPDIR is an wenvironment variable to be set in your OS, for example. Uwe Ligges On 18.11.2010 11:40, Janko Thyson wrote: I've created a /tmp directory so I wouldn't have to change TMPDIR. So far, so good. But now I get the error below. Anything I forgot regarding tcltk? Thx, Ja

Re: [Rd] Error in generating sweave-tex -> pdf file-cont.

2010-12-23 Thread Uwe Ligges
packages, he shouldn't copy the Sweave.sty in all directores containing Rnw file. You can also add the R subdirectory that includes Sweave.sty and freinds to the search path for your TeX distribution. In that case you won't need to pay attention on Sweave.sty upgrades.

Re: [Rd] Bug filed on unzip() function

2010-12-23 Thread Uwe Ligges
This message contains a good question: Is there any reason why the bug reports are no longer mailed to R-devel? I'd appreciate to get a notice what is going on in the bug repository without having to look on those web pages. Best wishes, Uwe On 21.12.2010 18:50, Ken Williams wrote: Hi, A

Re: [Rd] matrix multiplication speed R

2011-01-14 Thread Uwe Ligges
against optimized BLAS versions or how to substitute the BLAS is mentioned in the R INstallation and Administration manual. Best, Uwe Ligges On Fri, Jan 14, 2011 at 9:09 AM, oyvfos wrote: Hi, A quick bench-mark of an R matrix muliplication 500by500 X 500by1, all random variates

Re: [Rd] "Simulate" package namespace at development stage

2011-01-24 Thread Uwe Ligges
just building/installing/testing the package. Uwe Ligges Thanks a lot! Janko __ R-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-devel __ R-devel@r-project.org mailing list https

Re: [Rd] trojan at current development version?

2011-01-28 Thread Uwe Ligges
On 28.01.2011 13:49, peter dalgaard wrote: On Jan 28, 2011, at 09:47 , Andreas Mayr wrote: Hi, is it possible, that the current development version for Windows ( http://cran.at.r-project.org/bin/windows/base/R-2.13.0dev-win.exe) is infected by a trojan/virus. My antivir-program (www.avira.

Re: [Rd] R limits documented?

2011-02-12 Thread Uwe Ligges
I think it is easiest to point people to the manual "R Internals" for questions on the size of integers, pointers etc. Best, Uwe Ligges On 12.02.2011 03:24, David Winsemius wrote: On Feb 11, 2011, at 8:46 PM, Simon Urbanek wrote: On Feb 11, 2011, at 8:45 PM, Simon Urbanek wr

Re: [Rd] error in: testing if installed package can be loaded

2011-03-28 Thread Uwe Ligges
you testing. Using which command? What's the name of the package? Can we see the package? Do you have recent Rtools installed? [Checking packages works on winbuilder with R-2.13.0 alpha for 64-bit Windows for all CRAN packages without such a message.] Best, Uwe Ligges Is this

Re: [Rd] datalist and data objects in R Package building

2011-03-28 Thread Uwe Ligges
ess the list components afterwards. I think you misunderstood the data concept: You can save objects and load them if the package is installed. That's it. Best, Uwe Ligges 2) I created an image via save.image resulting in foo.rda (containing bar1, bar2, etc). data(foo) now loads bar1 - bar4,

Re: [Rd] datalist and data objects in R Package building

2011-03-28 Thread Uwe Ligges
lazy loading of the data, so you do not need to explicitly load by data are loaded on demand. Best, Uwe Ligges 2011/3/28 Uwe Ligges On 24.03.2011 16:51, andrew stewart wrote: Hello all, I have,say 4 R objects... bar1, bar2, bar3, bar4.. that I'd like to include in an R package &q

Re: [Rd] Suggests and examples

2011-04-03 Thread Uwe Ligges
On 03.04.2011 19:31, Jay Emerson wrote: I apologize in advance for probably missing something obvious, but if someone could point me in the right direction I'd be grateful. This NOTE is not unique to our package (I list a few others, below). Package bcp has several Suggests (strucchange, for

Re: [Rd] R CMD build --resave-data

2011-04-11 Thread Uwe Ligges
On 11.04.2011 02:47, Hervé Pagès wrote: Hi, More about the new --resave-data option As mentioned previously here https://stat.ethz.ch/pipermail/r-devel/2011-April/060511.html 'R CMD build' and 'R CMD INSTALL' handle this new option inconsistently. The former does --resave-data="gzip" by def

Re: [Rd] duplicates() function

2011-04-11 Thread Uwe Ligges
and find that your code and my optimization of it above gives a different undesired answer. Best, Uwe Ligges On 09.04.2011 01:05, B77S wrote: which(duplicated(x)=="TRUE") -- View this message in context: http://r.789695.n4.nabble.com/duplicates-function-tp3436584p3437614.html

Re: [Rd] R CMD build --resave-data

2011-04-13 Thread Uwe Ligges
On 13.04.2011 02:53, Hervé Pagès wrote: Hi Uwe, On 11-04-11 08:13 AM, Uwe Ligges wrote: On 11.04.2011 02:47, Hervé Pagès wrote: Hi, More about the new --resave-data option As mentioned previously here https://stat.ethz.ch/pipermail/r-devel/2011-April/060511.html 'R CMD build&#x

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