[Rd] Assumption of Gaussian innovations in function stats::arima

be wrong otherwise. Best regards, Peter Ruckdeschel __ R-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-devel

[Rd] Storage of byte code-compiled functions in sysdata.rda

Hi r-devels, we are seeing a new problem with our packages RobAStRDA (just new on CRAN, thanks to Uwe and Kurt!) and RobExtremes (to be submitted). It must be something recent with the way you internally treat/store byte-code compiled functions, as we have no problems with R-3.1.3, but do see a

Re: [Rd] Storage of byte code-compiled functions in sysdata.rda

uot; and (re-)install it and try require(UseInterpolTry) useInterpolFct(5) Steps (1)--(6) work with R-3.1.3, but no longer with R-devel. Am 01.05.2016 um 14:12 schrieb Tierney, Luke: > Can you provide a complete reproducible example? > > Sent from my iPhone > >> On May 1, 2016

Re: [Rd] Storage of byte code-compiled functions in sysdata.rda

(code[[2]]) > code[[3]] <- lapply(code[[3]], disasm.const) > code > } > if (typeof(code) == "closure") { > code <- .Internal(bodyCode(code)) > if (typeof(code) != "bytecode") > stop("function is not c

[Rd] text(1:10, col=NA) is not transparent

Maybe I am missing something, but according to the help page to par (section "Color Specification"), which is referred to in the help to text argument col: ‘"transparent"’ or (integer) ‘NA’ is _transparent_, useful for filled areas (such as the background!), and just invisible for things like line

Re: [Rd] text(1:10, col=NA) is printed in color 1 instead of color 0 (was "is not transparent")

r "transparent", but not for NA-values. This effect seems to be device independent, at least I have checked it for the windows, pdf, and jpeg devices under Windows and in the default graphics device under Linux. Any suggestions welcome, Peter > On Mon, Feb 20, 2012 at 6:09 AM, Pete

Re: [Rd] R-forge, package dependencies

Am 15.01.2013 21:37, schrieb Paul Gilbert: > I'm surprised this works on Windows and Mac, since RMonetDB does not > seem to be on CRAN. I thought it was still a requirement that > dependencies need to be on CRAN (which makes development difficult for > related packages like this). Sorry for my so

[Rd] Problem building (binary) packages for Windows

Hi, I am having a problem building binary packages for Windows recently. Normally, I use the "Murdoch-Sutherland" tool set, http://www.murdoch-sutherland.com/Rtools/ just build source packages by R CMD build and install these with R CMD INSTALL But now, for someone without

Re: [Rd] Problem building (binary) packages for Windows / resolved

Hi Dunchan, thanks for your quick answer. >> Searching the help archives, I found a posting by Uwe Ligges, >>http://article.gmane.org/gmane.comp.lang.r.general/64574/ >> saying that >>R CMD INSTALL --build >> was preferable to >>R CMD build --binary >> --- in which respect

Re: [Rd] Problem building (binary) packages for Windows

So my fault not having updated gratefully ackowledged, it would also be nice to be somewhat more detailed in filling the NEWS file then... > In general if you use R-devel or R-patched you need to update before > reporting any difficulties. 'Under development' needs to be taken >

Re: [Rd] Problem building (binary) packages for Windows

Dear Brian, Martin, and Uwe, thanks for your explanations; I have already replied to you in another mail; so I would only like to add some points here. On Sat, 16 May 2009, Martin Maechler wrote: > On Sat, 16 May 2009, Martin Maechler wrote: > >>> "UweL" == Uwe Ligges >>> on Fri, 15

Re: [Rd] was: Problem building (binary) packages for Windows

Dear Martin, Uwe and Brian thanks for your comments --- point taken: On Sat, 16 May 2009, Martin Maechler wrote: >> "UweL" == Uwe Ligges >> on Fri, 15 May 2009 20:48:03 +0200 writes: >> > > [.] > > >> Thank you for clarifying this and once again a

[Rd] Awkward escaping with five backslashes within \code{ } in new parse_Rd

Hi R-devels, I noticed that you are working quite actively on the new Rd-parser and have made it the default renderer in R-2.10.0dev. So I would like to come back on an issue I have already raised on this list last November ("Two minor escaping issues using \preformatted{} in Rd format") My

Re: [Rd] Awkward escaping with five backslashes within \code{ } in new parse_Rd

Dear R-devels, dear Duncan, just to close this thread... > Peter Ruckdeschel wrote: >> Hi R-devels, >> >> I noticed that you are working quite actively on the new Rd-parser >> and have made it the default renderer in R-2.10.0dev. So I would >> like to come back

[Rd] some (minor) Rd issue: line breaking in \S4method within \usage{}

Hi, this is perhaps not so much an issue, but as you are currently working on the Rd parser anyway... When you want to document specific S4 methods for an S4 generic by \S4method{} within a \usage{} environment, and the second (signature_list) argument is "long", be it because you use multiple di

[Rd] [not extremely urgent:] modifiying messages on overriding implicit S4 generics + intended maskings

Hi r-devels, I am coming with an RFE which is probably not extremely urgent, dealing with (optionally) modifiying messages on overriding implicit S4 generics + intended maskings according to some (optional) pkg-individual files. Details are shown below. Any comments welcome, Best, Peter ==

Re: [Rd] Recent TeX changes and R/package manuals

Dear Prof Ripley thanks (once again) for your alert [snip] > As far as I can tell, the following CRAN package manuals have been > affected: > > distrMod, RCurl, RGtk2, SparseM, VIM, bit, ggplot2, operators, > relations, spam, tensorA > > (and only distrMod fatally). > > Given the current

[Rd] questions as to building R from source under Windows

Hi R-devels, yesterday, on a new computer, in order to check my installation of "The Windows Toolset", I tried building R from source under Windows (in fact under Windows 7) --- and in the end succeeded. Some minor issues though (which I think should not be Windows 7 issues) which might be of mo

Re: [Rd] questions as to building R from source under Windows

Hi Uwe, thanks for your quick reply. [... and sorry for not setting you to the CC explicitely, but I am mailing to this list through gmane ...] >> yesterday, on a new computer, in order to check my installation >> of "The Windows Toolset", I tried building R from source under >> Windows (in fact

Re: [Rd] questions as to building R from source under Windows

once again me --- just some more precise information... [snip] >>> (1) TMPDIR on a different drive: >>> --- not sure whether this was my fault or you could do anything >>> about it: On my system, I have a separate drive for temp (i.e. E:), >>> and had this set in a corresponding TMPDIR environment

Re: [Rd] questions as to building R from source under Windows

Yet another clarification: [snip] >> (4) Did not work for me: build R on D: >> --- a Vista / Windows 7 issue? >> In the end I succeeded with my build on drive C: (NTFS formatted) >> giving the current user full access privileges to the installation >> folders; before, in order to cir

Re: [Rd] questions as to building R from source under Windows / small corrections for R-admin sec. 3.1.7

> Yet another clarification: > > [snip] > >>> (4) Did not work for me: build R on D: >>> --- a Vista / Windows 7 issue? >>> In the end I succeeded with my build on drive C: (NTFS formatted) >>> giving the current user full access privileges to the installation >>> folders; before, i

[Rd] references to (1) R source code in svn repo within .Rd file and (2) to C source code in comments in R code using .Internal() /.Primitive()

Hi R-devels, recently I wanted to quickly look up a C implementation in R-Core code in the official subversion repository; more specifically the code was called from R by means of the .Internal() interface. And: yes, I did read Uwe Ligges' article in R News, R Help Desk: Accessing the sources.

Re: [Rd] : Operator overloading for custom classes

tr (cf CRAN, developped under r-forge). You might want to look at the code in NormalDistribution.R resp. ContDistribution.R HTH Peter Ruckdeschel __ R-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-devel

[Rd] Exchange of information between functions aside from argument/return-value interface

Hi R-devels, I would like to ask for your advice on the preferred way to exchange information between functions aside from the regular argument/return-value interface. I am well aware that, S being a functional language, this is to be avoided where possible. There are exceptions, though: Let myF

Re: [Rd] Exchange of information between functions aside from argument/return-value interface

Thank you, Luke, for your promptous response. [snipped away my original message; to be found on https://stat.ethz.ch/pipermail/r-devel/2007-April/045216.html] > Sounds like lexical scoping should work for this also -- use <<- to > assign to the variable in the containing scope. > > Best, > > l

Re: [Rd] Exchange of information between functions aside from argument/return-value interface

Thank you, Luke, once again. >> [snipped away my original message; to be found on >> https://stat.ethz.ch/pipermail/r-devel/2007-April/045219.html] >> Or did I get something wrong? > > I think you did. You seem to be thinking in terms of dynamic scope, > which looks for variables in the caller a

[Rd] setIs-relation does not entail automatic coercion in S4 method dispatch --- should it?

Hi R-devels, I am a bit puzzled about when/if "setIs-conditional" coercion is performed in S4 method dispatch. Setup: Myclass1 setIs()-conditionally is inheriting from Myclass2. My first guess would have been: If the corresponding test clause in setIs() is TRUE and there is no Myclass1-method f

[Rd] minor flaw in integrate()

Hi, I noticed a minor flaw in integrate() from package stats: Taking up arguments lower and upper from integrate(), if (lower == Inf) && (upper == Inf) or if (lower == -Inf) && (upper == -Inf) integrate() calculates the value for (lower==-Inf) && (upper==Inf). Rather, it shoul

[Rd] inaccuracy in qbinom with partial argument matching

Hi, I found the following strange effect with qbinom & partial argument matching p0 <- pbinom(0, size = 3, prob = 0.25) qbinom(p0, size = 3, prob = 0.25) ## 0 o.k. qbinom(p0-0.05, size = 3, prob = 0.25) ## 0 o.k. ## positional matching: qbinom(p0, 3,0.25) ## 0 o.k. #

Re: [Rd] inaccuracy in qbinom with partial argument matching

Petr Savicky wrote: > Brian Ripley wrote: >> I wrote: >> > ## partial argument matching: >> > qbinom(p0 , s = 3,p= 0.25) ## 1 ??? >> > qbinom(p0-0.05, s = 3,p= 0.25) ## 1 ??? >> > qbinom(p0-0.06, s = 3,p= 0.25) ## 0 o.K. >> > >> > Unfortunately I have no I idea how to

Re: [Rd] minor flaw in integrate()

Thanks Martin and Duncan for your comments, Martin Maechler wrote: >>>>>> "DM" == Duncan Murdoch <[EMAIL PROTECTED]> >>>>>> on Mon, 02 Jul 2007 21:56:23 -0400 writes: > > DM> On 28/06/2007 5:05 PM, Peter Ruckdeschel wro

[Rd] BLAS / LAPACK version information from within R-session?

se information similar to StringFileInfo in other OS's ... Any suggestions appreciated. Best, Peter Ruckdeschel __ R-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-devel

[Rd] Sweave.sty problems under WinXP (English locale) with default settings

Hi R-devels, I encounter the following problem when I want to build a vignette in the package building process under Windows platform i386-pc-mingw32 arch i386 os mingw32 system i386, mingw32

[Rd] relative path to source files in vignette

Hi, this may be slightly off-topic, but as you are the experts: we have written a small vignette, in which we want to refer to .R, .Rd source files by means of relative paths. More specifically, we want to use TeX package "listings" to include source code, [which btw in the mean time works pret

Re: [Rd] relative path to source files in vignette

Gabor Grothendieck schrieb: > See ?system.file with the package= argument. > Thank you Gabor, but this refers to the /installed/ package, while we are needing path information about the not-yet-built source code of the package during R CMD check / build. Peter ___

Re: [Rd] relative path to source files in vignette

Thanks again Gabor, for your quick reply, > Try placing a copy of the files in the inst directory and then > accessing them via system.files("myfile.R", package = "mypackage") > you mean I should do this in an S-chunk in the .Rnw file? I.e., running Sweave on it would then produce the copy into

[Rd] Version information for S4 classes --- elementary version management

Hi, we are about to update some class definitions in our distrXXX family of packages, so I would be eager to know whether there are plans in R Core to implement some version management tools for S4 classes as described in section 7.4 in JMC's "Green Book". In his recent book (continuing the color

Re: [Rd] relative path to source files in vignette [a solution somehow]

Gabor Grothendieck schrieb: > On Fri, Oct 10, 2008 at 7:06 PM, Peter Ruckdeschel > <[EMAIL PROTECTED]> wrote: > [snip] >> This could indeed be an option, but as noted in my reply to Robert, my >> guess is that in the library where you install your packages to

[Rd] puzzled by cat() behaviour when argument '...' is a vector (and argument 'sep' contains "\n")

Hi r-devels, I am a bit puzzled by the behaviour of cat() --- any help is appreciated... At least AFAICS, cat() for vector-valued '...' argument behaves in contradiction to what I understand from the note in the help to cat() which reads " Despite its name and earlier documentation, 'sep' is a

[Rd] Two minor escaping issues using \preformatted{....} in Rd format

Hi r-devels, I have two minor problems with special characters in Rd files when used within a \preformatted{} markup command: -- 1. issue: backslash + single brace -- I would like to write "\

[Rd] Wishlist: optional svn-revision number tag in package DESCRIPTION file

quot;) != "C") && capabilities("iconv")) { ## might have an invalid encoding ... newdesc <- try(lapply(desc, iconv, from=enc, to=encoding)) if(!inherits(newdesc, "try-error")) desc <- newde

Re: [Rd] Wishlist: optional svn-revision number tag in package DESCRIPTION file

och wrote: > | On 3/31/2009 10:41 AM, Peter Ruckdeschel wrote: > | > Could we have one (or maybe more) standardized optional tag(s) > | > for package DESCRIPTION files to cover svn revision info? > | > This would be very useful for bug reporting... > > Indeed. I am do

[Rd] setIs and method dispatch in S4 classes

Dear all, I have a question regarding setIs and method dispatch in S4 classes: Consider the following example: # ## A02 "contains" A01 by setIs: setClass("A01", representation(a="numeric",b="numeric")) setClass("A02", representation(a="numeric",d

Re: [Rd] setIs and method dispatch in S4 classes

Hi Seth , thank you for your reply. Seth Falcon <[EMAIL PROTECTED]> writes: >Peter Ruckdeschel <[EMAIL PROTECTED]> writes: > > >> ## now: B00 mother class to B01 and B02, and again B02 "contains" B01 by >> setIs: >> setClass(&qu

Re: [Rd] setIs and method dispatch in S4 classes

ment methods for that function, maybe along with setAs() >>methods--not setIs(). You mean I should not leave the coercion decision up to the dispatching mechanism? >>It seems likely that such a solution would be cleaner in design, not to >>mention that it would likely work. (see

[Rd] yet another problem with S4 dispatch (with setClassUnion)

Dear John and Seth, dear R-devels, once again the question of method dispatch in S4 -- this time with setClassUnion(); taking up your advice in https://stat.ethz.ch/pipermail/r-devel/2006-April/037200.html https://stat.ethz.ch/pipermail/r-devel/2006-April/037201.html I have been too quick in st

Re: [Rd] yet another problem with S4 dispatch (with setClassUnion)

-BEGIN PGP SIGNED MESSAGE- Hash: SHA1 Dear John, sorry for having bothered you with these problems. > As I think Seth told you before, if you want to control the order > of inheritance at the same level, you need to use the intended order > in the contains= argument to setClass. Apolog

[Rd] contribution offer: df() for non-centrality != 0

Hi R-devels, I noticed that for the scheduled R 2.3.0, there is still no function df() for non-centrality != 0. Easter is quickly approaching, so as my little gift, I would like to offer you some code to fill this gap: After excluding some "unusual" cases, it amounts to differentiating the corre

[Rd] Wishlist: 'quietly' argument for .onAttach() / .First.lib()

Hi R-devels, in "Writing R extensions" as well as in the help to .onAttach(), you mention that one could use this function to issue a start-up message/banner for the package. My little wish for Easter: a 'quietly'-type argument for .onAttach() / .First.lib() which is passed through by functions

Re: [Rd] contribution offer: df() for non-centrality != 0

Hi Martin, Martin Maechler wrote: > but note that this is clearly too late for 2.3.0 : > If you look at the release schedule at >http://developer.R-project.org/ > you see that April 10 was "Feature Freeze". > Yes, don't worry, I have been aware of this; I did not mean to submit the code

Re: [Rd] Wishlist: 'quietly' argument for .onAttach() / .First.lib()

Andy Liaw wrote: > From: Prof Brian Ripley > >/ > />/ On Thu, 13 Apr 2006, Peter Ruckdeschel wrote: > />/ > />/ > Hi R-devels, > />/ > > />/ > in "Writing R extensions" as well as in the help > />/ > to .onAttach(), you mention t

Re: [Rd] Wishlist: 'quietly' argument for .onAttach() / .First.lib()

Summing up the discussions in this thread, I have built a package 'startupmsg' available (in a first version) for the moment at http://www.uni-bayreuth.de/departments/math/org/mathe7/R-devel/startupmsg_0.1.tar.gz (see documentation within) In particular, I took up suggestions from Seth Falcon's

[Rd] Wishlist for promptPackage / index

Hi R-devels, would it be possible to enhance either promptPackage() or the default indexing mechanism for packages so that -- if it exists -- (the contents of) file -package.Rd is sorted first in * the .dvi / .pdf documentation file * the .chm documentation file * the package 00index.htm

Re: [Rd] Wishlist for promptPackage / index

On 4/19/2006 1:49 AM, Duncan Murdoch wrote: >On 4/18/2006 7:02 PM, Peter Ruckdeschel wrote: >> would it be possible to enhance either promptPackage() >> or the default indexing mechanism for packages >> so that -- if it exists -- (the contents of) file >> -pa

Re: [Rd] Wishlist: 'quietly' argument for .onAttach() / .First.lib()

Dear Seth, thank you very much for your helpful comments: >I had a quick look and for what it's worth, a few comments... > >* Seems a bit more code than I would expect. Arguable, yes... > I think you have some use cases that I don't have ;-). hopefully I'm not the only one to have these cases

[Rd] optimize() and extrema at the interval bounds

Dear r-devels, by construction, optimize() only evaluates the objective function *inside* the bounds of argument 'interval'. It does not seem to be an 'extremely' rare case that extrema are attained *at* the bounds of argument 'interval' :-) It is fairly easy to write a wrapper to optimize() enf

[Rd] confused by inheritance...

Hi r-devels, I am stuck in some S4 inheritance problem: setClass("A",representation(a="numeric")) setClass("A1",representation(b="numeric"),contains="A") setClass("A2",representation(c="numeric"),contains="A1") if(!isGeneric("foo")){ setGeneric("foo", function(x,y,z, ...) standardGeneric("fo

Re: [Rd] confused by inheritance...

) ## gives 3 as it should foo(x2,y=2) ## casts to "A1" and gives (2,2) as it should foo(x2) ## now gives 2 as if x2 were permanently cast to "A1" setMethod("foo",signature(x = "A2", y = "missing", z = "missing"), function(x)[EMAIL PROTECTED] ) foo(x2) #

[Rd] New feature for download.packages(): optional resolution of package dependencies

Hi r-devels, may I ask for an enhancement for download.packages() to optionally resolve package dependencies similarly to the respective functionality in install.packages() ? This would be a major help in compiling a large number of packages (e.g. by means of download.view() from pkg ctv) for lat

[Rd] directives to explicitely exclude objects from import into namespaces

import. Or have I overseen some obvious, easier way to achieve this? Best regards, Peter -- Dr. habil. Peter Ruckdeschel, Abteilung Finanzmathematik, F3.17 Fraunhofer ITWM, Fraunhofer Platz 1, 67663 Kaiserslautern Telefon: +49 631/31600-4699 Fax: +49 631/31600-5699 E-Mail : peter.ruckdesc

Re: [Rd] RFC: Matrix package: Matrix products (%*%, crossprod, tcrossprod) involving "nsparseMatrix" aka sparse pattern matrices

> matrix products in another way than by the standard %*%, > crossprod() and tcrossprod() functions. > So one possibility could be to change the standard functions to behave > numerically, > and e.g., use %&% (replace the numeric "*" by a logical "&"

[Rd] large sysdata.rda file --- strategies?

eck issues a warning "Found directory 'R' with no source files" Of course a workaround is adding a comment-only file comment.R to the R folder. Q2: Is there a lazy load / lazy data mechanism available for sysdata.rda ? If so how would one enforce it? Any suggestions appreciated, B

Re: [Rd] large sysdata.rda file --- strategies?

Dear Uwe, > > On 07.02.2013 15:41, Dr. Peter Ruckdeschel wrote: >> Hi, >> >> to speed up computations in our RobASt family of packages, we use >> interpolation on a grid of precomputed values which we save together >> with the interpolating functions (res

[Rd] cryptic message of R CMD check

development (unstable) (2006-00-00 r0)" but we built this R based on the then devel-version on July 29. Could you give us a clue in this Thank you already Peter -- Dr. Peter Ruckdeschel, Abteilung Finanzmathematik, F3.17 Fraunhofer ITWM, Fraunhofer Platz 1, 67663 Kaiserslautern T

[Rd] R CMD check warning "no visible binding for global variable" and hasArg()

ument but "..." is. Clearly, then 'x' in general will have no binding. I am not sure whether this is of general interest, but I think it should not be too difficult to check whether this "missing binding" occurs within a call to hasArg() [and then not to issue the warning].

Re: [Rd] Warning: missing text for item ... in \describe?

esponding recommendation to the "Writing R extensions" manual? I have just uploaded a quick patch for the sqrt() and solve() ".Rd" files of distrMod inserting a "." at the closing brace of \eqn{} in both cases. Should be on CRAN soon... Best, Peter -- Dr.

[Rd] UTF-8 encoding issue with R CMD check with install-args="--latex"

hy this happens, so any hints would be warmly welcome. Some more details on my testing configuration and my first insights into this error can be found here: https://cloudstorage.uni-oldenburg.de/s/kStWp5PNiwJEqfz Best, Peter Ruckdeschel

Re: [Rd] UTF-8 encoding issue with R CMD check with install-args="--latex"

Thanks Ivan and Kurt, for nailing this down, best regards, Peter Am 17.01.2025 um 09:01 schrieb Kurt Hornik: Ivan Krylov via R-devel writes: Thanks. Will try to fix ... Best -k В Thu, 16 Jan 2025 18:09:25 +0100 Peter Ruckdeschel via R-devel пишет: this is to report some minor UTF-8