[Rd] suppressing stderr output from system() calls

2011-10-05 Thread Mark Cowley
in9.8.0/x86_64 (64-bit) locale: [1] en_AU.UTF-8/en_AU.UTF-8/C/C/en_AU.UTF-8/en_AU.UTF-8 attached base packages: [1] stats graphics grDevices utils datasets methods base > - Mark Cowl

Re: [Rd] suppressing stderr output from system() calls

2011-10-05 Thread Mark Cowley
install.package & all code which has embedded install.packages calls, are there any other ways? @Brian, thanks for the pointer to the news article on connections - I did learn something there cheers, Mark On 06/10/2011, at 3:59 AM, Martin Morgan wrote: > On 10/05/2011 02:36 AM, Mark Co

[Rd] R CMD INSTALL writes to stderr

2011-10-10 Thread Mark Cowley
sages that are produced by install.packages() when R libraries are being installed. So, will it be possible for R CMD INSTALL output be written to stdout in the future? kind regards, Mark - Mark Cowley, PhD Pancreatic Cancer Program | Peter

Re: [Rd] R CMD INSTALL writes to stderr

2011-10-10 Thread Mark Cowley
. Code available if anyone's interested cheers, Mark On 11/10/2011, at 12:23 PM, Simon Urbanek wrote: > > On Oct 10, 2011, at 8:48 PM, Mark Cowley wrote: > >> Dear list, >> (this is a follow up from a previous query) >> >> Why does R CMD INSTALL write most o

[Rd] Unable to reload Rdoc

2012-01-27 Thread Mark Cowley
U.UTF-8/en_AU.UTF-8 attached base packages: [1] tools stats graphics grDevices datasets utils methods [8] base other attached packages: [1] updateR_1.0.4 codetools_0.2-8 devtools_0.4 loaded via a namespace (and not attached): [1] RCurl_1.

Re: [Rd] Unable to reload Rdoc

2012-01-29 Thread Mark Cowley
elp(); > } > }, error = function(ex) { > print(ex); > }) > > That way the URL for the help page remain the same (as long as you > only run one R session) and the internal web server is up and running > (no need for help.start()). > > My $.02 > > /Henrik >

[Rd] R-2.15.1 CMD CHECK output: "Call Sequence"

2012-10-20 Thread Mark Cowley
Hi guRus, i'm running R-2.15.1 and the R CMD CHECK output appears to have changed substantially, in that instead of pointing me to the offending functions or files, I get lots of 'call sequence' traces as below. I've been using R CMD CHECK for years & never seen anything like this before. This

Re: [Rd] R-2.15.1 CMD CHECK output: "Call Sequence"

2012-10-21 Thread Mark Cowley
guilty of not looking beyond the spotlight of the current package. kind regards, Mark On 21/10/2012, at 1:50 AM, Prof Brian Ripley wrote: > On Sat, 20 Oct 2012, Mark Cowley wrote: > >> Hi guRus, > >> i'm running R-2.15.1 and the R CMD CHECK output appears to have