Re: [Rd] Problem using model.frame with argument subset in own function

2009-08-09 Thread Gavin Simpson
On Sun, 2009-08-09 at 11:32 -0500, Douglas Bates wrote: > On Sat, Aug 8, 2009 at 1:31 PM, Gavin Simpson wrote: > > Dear List, > > > I am writing a formula method for a function in a package I maintain. I > > want the method to return a data.frame that potentially only

Re: [Rd] eurodist example dataset is malformed

2009-08-13 Thread Gavin Simpson
his in a clean session with an up-to-date R or R-Devel then send details of your R back to the list for further investigation. HTH G -- %~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~% Dr. Gavin Simpson [t] +44 (0)20 7679 0522 ECRC, UCL Geography, [f

[Rd] Standard non-standard evaluation problem with 2.10-0

2009-11-03 Thread Gavin Simpson
1] stats graphics grDevices utils datasets methods [7] base other attached packages: [1] analogue_0.6-21 MASS_7.2-48 lattice_0.17-25 [4] vegan_1.15-3 loaded via a namespace (and not attached): [1] grid_2.10.0 tools_2.10.0 Thanks in advance, G -- %~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%

[Rd] SOLVED: Re: Standard non-standard evaluation problem with 2.10-0

2009-11-03 Thread Gavin Simpson
ersion, and it was my mistake in using '[[' where I meant '['. All the best, Gavin On Tue, 2009-11-03 at 20:05 +, Gavin Simpson wrote: > Dear List > > I am getting an error when checking my analogue package with > R2.10.0-patched. The error comes when runni

Re: [Rd] [R] Prime Numbers Pkgs - Schoolmath is broken

2010-06-14 Thread Gavin Simpson
osting guide http://www.R-project.org/posting-guide.html > and provide commented, minimal, self-contained, reproducible code. -- %~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~% Dr. Gavin Simpson [t] +44 (0)20 7679 0522 ECRC, UCL Geography,

Re: [Rd] [R] Prime Numbers Pkgs - Schoolmath is broken

2010-06-15 Thread Gavin Simpson
On Tue, 2010-06-15 at 13:54 +0200, Peter Dalgaard wrote: > Gavin Simpson wrote: > > On Mon, 2010-06-14 at 07:16 -0700, Red Roo wrote: > > >> primes() and primlist are broken in Schoolmath pkg on CRAN. > >> My analysis can be found here http://j.mp/9BNI9q >

Re: [Rd] Rscript on Windows

2007-02-17 Thread Gavin Simpson
;>>>>> > > >>>>>> ?shQuote contains a link with the following perl script example: > > >>>>>> ===8<=== > > >>>>>> @echo off > > >>>>>> :: hello.bat > > >>>>>>

[Rd] Wishlist: Make screeplot() a generic (PR#9541)

2007-03-02 Thread gavin . simpson
Full_Name: Gavin Simpson Version: 2.5.0 OS: Linux (FC5) Submission from: (NULL) (128.40.33.76) Screeplots are a common plot-type used to interpret the results of various ordination methods and other techniques. A number of packages include ordination techniques not included in a standard R

Re: [Rd] Wishlist: Make screeplot() a generic (PR#9541)

2007-03-17 Thread Gavin Simpson
If this is preferred I can provide a patch for this scenario for consideration? All the best, Gav On Fri, 2007-03-02 at 17:53 +0100, [EMAIL PROTECTED] wrote: > Full_Name: Gavin Simpson > Version: 2.5.0 > OS: Linux (FC5) > Submission from: (NULL) (128.40.33.76) > > >

Re: [Rd] CRAN packages maintained by you

2007-04-10 Thread Gavin Simpson
l the best, G > > Best > -k > > -- %~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~% Gavin Simpson [t] +44 (0)20 7679 0522 ECRC & ENSIS, UCL Geography, [f] +44 (0)20 7679 0565 Pearson Building, [e] gavin.simpsonATNOSPAMucl.ac.uk Gower

Re: [Rd] CRAN packages maintained by you

2007-04-10 Thread Gavin Simpson
at the machine running the prerel checks has no latin1 locales. > Will generate these (and in fact this time all possible ones). > > Best > -k > > > > On Tue, 10 Apr 2007, Gavin Simpson wrote: > > >> On Sat, 2007-04-07 at 08:40 +0200, Kurt Hornik wrote: >

Re: [Rd] Quick notes on R with F7

2007-06-06 Thread Gavin Simpson
he decision on the > > part of the Fedora leadership folks that TeXLive is not yet ready for > > prime time. > > > > > > Other than that, things seem to be well, but I suspect that there will > > be many updates coming in the first 30 days or so...the Fedora lists

Re: [Rd] step() in sink() and Sweave()

2007-06-13 Thread Gavin Simpson
onal but searching NEWS did not > give any information or reasoning. Would it be sensible to go back to > the old behaviour? I found some Swoven files from R 2.4.0 that still put > both parts of the output to the same place. For the sake of Sweave and > sink, I'd prefer the one pl

Re: [Rd] step() in sink() and Sweave()

2007-06-13 Thread Gavin Simpson
On Wed, 2007-06-13 at 08:04 -0700, Seth Falcon wrote: > Jari Oksanen <[EMAIL PROTECTED]> writes: > > > On Wed, 2007-06-13 at 13:33 +0100, Gavin Simpson wrote: > >> Dear Developers, > >> > >> This change also just bit me whilst updating Sw

Re: [Rd] formula(CO2)

2007-07-16 Thread Gavin Simpson
c | Plant as this can then be directly used in lme > lme(CO2) Linear mixed-effects model fit by REML Data: CO2 Log-restricted-likelihood: -283.1447 Fixed: uptake ~ conc (Intercept)conc 19.50028981 0.01773059 But like Gabor, I'm struggling to see where this [formula(data.frame)]

Re: [Rd] Error while fitting Partial Proportional Odds model using vglm

2007-07-17 Thread Gavin Simpson
a you are providing are what VGAM expects, and if the problem still persists, email Thomas with a reproducible example. G -- %~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~% Gavin Simpson [t] +44 (0)20 7679 0522 ECRC [f]

[Rd] correct Rd markup for \value{}

2007-08-03 Thread Gavin Simpson
R version.string R version 2.5.1 Patched (2007-07-05 r42131) -- %~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~% Gavin Simpson [t] +44 (0)20 7679 0522 ECRC, UCL Geography, [f] +44 (0)20 7679 0565 Pearson Building, [e] gavin.simpsonATNOSPAMucl.ac.uk Gower

Re: [Rd] Problem with points/lines (PR#10472)

2007-11-29 Thread Gavin Simpson
s, xaxt = xaxt) } else stop("only for 1-D table") } ## example to run with: set.seed(1234) x <- sample(1:10, 30, replace = TRUE) y <- x / 2 plot(table(x), type = "p") points(table(y), col = "red", type = "p", pch = 2) ## And if you

Re: [Rd] Problem with points/lines (PR#10472)

2007-11-29 Thread Gavin Simpson
On Thu, 2007-11-29 at 17:34 +0100, Peter Dalgaard wrote: > Gavin Simpson wrote: > > On Thu, 2007-11-29 at 16:36 +0100, Peter Dalgaard wrote: > > > >> [EMAIL PROTECTED] wrote: > >> > >>> Full_Name: Carlos Gershenson > >>> Ver

Re: [Rd] help files for load and related functions

2007-12-17 Thread Gavin Simpson
functions to have). I can understand > > there could be another point of view on that. However, I > > definitely think that there should be a Side Effects section > > in the help files of functions whose whole point is a side > > effect. > > > > Patrick Burns >

Re: [Rd] pheno package (PR#10674)

2008-02-01 Thread Gavin Simpson
heir time for free you can understand they might be a bit miffed that you appear to have failed to heed any of the advice and requests in the posting guide and instructions on what is and is not a bug in R from the FAQ. -- %~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~% Dr. Ga

Re: [Rd] bug using matplot (PR#10676)

2008-02-01 Thread Gavin Simpson
_ > R-devel@r-project.org mailing list > https://stat.ethz.ch/mailman/listinfo/r-devel -- %~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~% Dr. Gavin Simpson [t] +44 (0)20 7679 0522 ECRC, UCL Geography, [f] +44 (0)20 7679 05

Re: [Rd] 0.45<0.45 = TRUE (PR#10744)

2008-02-12 Thread Gavin Simpson
l work for one the the R Core Development Team who will now have to deal with your bug report in the R bug tracker. HTH G > > Cheers! > > Jacques. > > -- %~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~% Dr. Gavin Simpson [t] +44 (0)20 7679

[Rd] r44608 fails make check-all in scatter.smooth example

2008-02-25 Thread Gavin Simpson
s.smooth -> simpleLoess -> .Fortran Execution halted This is on Fedora 8. Plots on the new X11() device look very nice though! Cheers, G -- %~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~% Dr. Gavin Simpson [t] +44 (0)20 7679 0522 ECRC, UCL Geography, [

Re: [Rd] r44608 fails make check-all in scatter.smooth example

2008-02-25 Thread Gavin Simpson
interchanged. Fixed in 44609, I hope. Dear Prof. Ripley, Yep, works for me. Cheers, Gavin > > > On Mon, 25 Feb 2008, Gavin Simpson wrote: > > > Dear List, > > > > Having had my appetite sufficiently whetted by Prof. Ripley's email > > about the new gr

[Rd] 2.7.0 beta (rev 45263) failing 'make vignettes'

2008-04-12 Thread Gavin Simpson
-- %~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~% Dr. Gavin Simpson [t] +44 (0)20 7679 0522 ECRC, UCL Geography, [f] +44 (0)20 7679 0565 Pearson Building, [e] gavin.simpsonATNOSPAMucl.ac.uk Gower Street, London [w] http://www.ucl.ac.

Re: [Rd] 2.7.0 beta (rev 45263) failing 'make vignettes'

2008-04-12 Thread Gavin Simpson
On Sat, 2008-04-12 at 17:48 +0100, Prof Brian Ripley wrote: > On Sat, 12 Apr 2008, Gavin Simpson wrote: > > > Dear list, > > > > On Fedora 8 I downloaded the beta version of R via svn. make and make > > check-all worked fine, but make vignettes is failing with: >

Re: [Rd] Linux installation

2008-05-09 Thread Gavin Simpson
T > > > > __ > > R-devel@r-project.org mailing list > > https://stat.ethz.ch/mailman/listinfo/r-devel > > > > > ****** > The contents of this email are f

[Rd] example() and "ask"

2008-06-18 Thread Gavin Simpson
svn rev45948 language R version.string R version 2.8.0 Under development (unstable) (2008-06-18 r45948) Many tha

[Rd] bug in (and patch for) example preserving device 'ask' state [Was Re: example() and "ask"]

2008-06-18 Thread Gavin Simpson
code. If anyone knows of such an example, I'd be happy to run it in my local R devel build and see how the new code performs. All the best, G On Wed, 2008-06-18 at 13:28 +0100, Gavin Simpson wrote: > Dear list, > > Is it intentional that example() opens a new device and leaves i

[Rd] Patch for minor typo in legend.Rd

2008-06-25 Thread Gavin Simpson
d. All the best, G -- %~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~% Dr. Gavin Simpson [t] +44 (0)20 7679 0522 ECRC, UCL Geography, [f] +44 (0)20 7679 0565 Pearson Building, [e] gavin.simpsonATNOSPAMucl.ac.uk Gower Street, London [w] http://www.ucl.ac.uk

[Rd] Missing links on Windows and \link[bar]{foo}; clarification

2009-01-13 Thread Gavin Simpson
/ package? Is this different when referring to a function in another, non-recommended package (i.e. that \code{\link{panel.xyplot}} is preferred in most situations)? Thanks in advance, Gavin -- %~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~% Dr. Gavin Simpson

Re: [Rd] Missing links on Windows and \link[bar]{foo}; clarification

2009-01-13 Thread Gavin Simpson
f the reasons I was going through my Rd files was to fix-up some problems with the mark-up that the new parser identified. Some changes I made (not related to the parser version 2 warnings) triggered these warnings on R-Forge. All the best, Gavin > > On Tue, 13 Jan 2009, Gavin Simpson wrot

Re: [Rd] [R] pdf() and pch problems

2009-01-22 Thread Gavin Simpson
61 (self) > >> 1 South Parks Road, +44 1865 272866 (PA) > >> Oxford OX1 3TG, UKFax: +44 1865 272595 > >> > >> __ > >> r-h...@r-project.org mailing list >

Re: [Rd] [R] pdf() and pch problems

2009-01-22 Thread Gavin Simpson
On Thu, 2009-01-22 at 15:08 +, Brian D Ripley wrote: > On Thu, 22 Jan 2009, Gavin Simpson wrote: > > > On Thu, 2009-01-22 at 15:21 +0100, Martin Maechler wrote: > >>>>>>> "TZ" == T Zumbrunn > >>>>>>> on Thu, 22 Ja

Re: [Rd] undesirable rounding off due to 'read.table' (PR#8974)

2006-06-13 Thread Gavin Simpson
Ps. Wasn't sure about the etiquette of replying to R-bugs in recipients, so deleted it in case this caused further work for the maintainer(s) of the bug repository. Sorry if this isn't desirable. -- %~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~% * Note new Address, Telephone

[Rd] problem getting R 2.3.1 svn r38481 to pass make check-all

2006-07-04 Thread Gavin Simpson
Hi, I noticed this problem on my home desktop running FC4 and again on my laptop running FC5. Both have previously compiled and passed make check-all on 2.3.1 svn revisions from 10 days ago or so. On both these machines, make check-all is consistently failing (4 out of 4 attempts on the FC 4 deskt

Re: [Rd] problem getting R 2.3.1 svn r38481 to pass make check-all

2006-07-05 Thread Gavin Simpson
ve > now done so. Thanks for confirming and fixing this. G -- %~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~% Gavin Simpson [t] +44 (0)20 7679 0522 ECRC & ENSIS, UCL Geography, [f] +44 (0)20 7679 0565 Pearson Building, [e] gavin.sim

Re: [Rd] BUG in " == " ? (PR#9065)

2006-07-07 Thread Gavin Simpson
al <- as.logical(all.equal(x, y)) retval[is.na(retval)] <- FALSE retval }, y) } which(v.all.equal(x, 0.7)) # 1 72 103 Again, maybe this is a bad thing...? In which case, I guess I'm about to get told so... ;-) G -- %~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%

[Rd] Using \u2030 in plot axis label -> stack smashing

2006-09-18 Thread Gavin Simpson
Under development (unstable) major 2 minor 5.0 year 2006 month 09 day18 svn rev39383 language R version.string R version 2.5.0 Under development (unstable) (2006-09-18 r39383) -- %~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%

Re: [Rd] Using \u2030 in plot axis label -> stack smashing

2006-09-18 Thread Gavin Simpson
On Mon, 2006-09-18 at 19:02 +, Gregor Gorjanc wrote: > Gavin Simpson ucl.ac.uk> writes: > > > > Dear List > > > > I just noticed the following behaviour in R 2.3.1 Patched (2006-06-13 > > r38342) and confirmed similar behaviour in R 2.4.0 alpha (2006-09-

Re: [Rd] Using \u2030 in plot axis label -> stack smashing

2006-09-19 Thread Gavin Simpson
= 0; int i, ext; size_t res; > > - char buff[9]; Rboolean delim = FALSE; > > + char buff[MB_BUF]; Rboolean delim = FALSE; > >if((c = xxgetc()) == '{') delim = TRUE; else xxungetc(c); > >for(i = 0; i < 8;

Re: [Rd] Using \u2030 in plot axis label -> stack smashing

2006-09-19 Thread Gavin Simpson
ing > in maintainer-mode. > > The fundamental issue is that there are some build tools we don't want > to assume that everybody has (here: YACC/Bison), and also that build > times don't usually survive SVN checkouts, so gram.y may well appear > to be more recent than

[Rd] Status of R 2.4.0 in svn repository and R-Admin manual

2006-10-04 Thread Gavin Simpson
nce, G -- %~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~% Gavin Simpson [t] +44 (0)20 7679 0522 ECRC & ENSIS, UCL Geography, [f] +44 (0)20 7679 0565 Pearson Building, [e] gavin.simpsonATNOSPAMucl.ac.uk Gower Street, London [

Re: [Rd] Status of R 2.4.0 in svn repository and R-Admin manual

2006-10-04 Thread Gavin Simpson
On Wed, 2006-10-04 at 15:03 +0200, Peter Dalgaard wrote: > Gavin Simpson <[EMAIL PROTECTED]> writes: > > > Dear list, > > > > I have been using and testing the alpha/betas of R 2.4.0, sources for > > which I got from svn.r-project.org/R/branches/R-2-4-br

Re: [Rd] Compiling R 2.4.0 in ubuntu/linux

2006-10-11 Thread Gavin Simpson
oth R-Help *and* R-devel; posting to one list is quite sufficient and only R-devel is the appropriate list for questions of this nature. HTH G -- %~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~% Gavin Simpson [t] +44 (0)20 7679 0522 ECRC & ENSIS,

Re: [Rd] How to link to vignette from .Rd file

2006-11-07 Thread Gavin Simpson
gt; > > Yes, that's a major problem in the current R help system. You can give > > the user code that would work to show the vignette, but there's no way > > to create a live link to it. > > > To create the PDF file from the Rd file use R CMD Rd2dvi, a

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