the version format should be x.y
'Changes in version 2.36' should work...
benilton
On 22 January 2011 15:58, Terry Therneau wrote:
> I'm converting the "Changelog" files that I have used in the survival package
> (since the 1980s) to the inst/NEWS.Rd format and a couple of things are not
> cle
Hi,
I have a BioC infra-structure package that works fine (I can build,
check and load it successfully) on revision r53950. The very same
package fails on r54591 with the error below:
Error in loadNamespace(package, c(which.lib.loc, lib.loc), keep.source
= keep.source) :
cyclic name space depen
Martin and Professor Ripley,
Thank you very much for your attention and time on this.
I've fixed the package accordingly.
benilton
On 2 March 2011 06:39, Prof Brian Ripley wrote:
> On Tue, 1 Mar 2011, Martin Morgan wrote:
>
>> On 03/01/2011 03:19 PM, Benilton Carvalho
Hi,
I'm working on a package and observed a behaviour that was suggested
to be incompatible with the documentation.
The code below:
x <- matrix(1:4, 2)
dimnames(x) <- list()
works just fine. But checking the documentation for dimnames(), it
states that if value is a list "its components are eit
Thank you very much for pointing me to the correct part of the
documentation (and apologies for that), Simon. Very much appreciated,
b
On 6 June 2012 00:43, Simon Urbanek wrote:
>
> On Jun 5, 2012, at 7:37 PM, Benilton Carvalho wrote:
>
>> Hi,
>>
>> I'm wor
Hi,
I'm working on an S4 class that is expected to behave like an array.
I have some difficulties when defining '[' and I wonder if someone
could point me to the right direction:
1) Call the S4 object "obj"
2) Assume dim(obj) = c(10, 4, 2)
3) Suppose someone calls: obj[1:3,] , which is a mistake
at 3:24 PM, Benilton Carvalho
wrote:
My understanding is that providing nrow and ncol, you want to create
a diagonal matrix with those dimensions.
diag(pi, 6, 6)
and that by
diag(foo, 2, 2)
you really meant
diag(foo)[2]
Apologies if I misunderstood.
b
On May 14, 2009, at 10:45 AM, mich
My understanding is that providing nrow and ncol, you want to create a
diagonal matrix with those dimensions.
diag(pi, 6, 6)
and that by
diag(foo, 2, 2)
you really meant
diag(foo)[2]
Apologies if I misunderstood.
b
On May 14, 2009, at 10:45 AM, michael.m.spie...@gmail.com wrote:
Full_N
I'm bringing this issue to r-devel as my idea of sending it to r-help
appears to be wrong.
The following is reproducible in R-patched and R-devel (also in older
versions).
An outlier is inserted in group E and the last plot by plot.lm
suggests that the point belongs to D.
It appears to
Check the documentation and the archives. Not a bug. b
On Nov 19, 2009, at 8:30 PM, m...@celos.net wrote:
Arrays of POSIXlt dates always return a length of 9. This
is correct (they're really lists of vectors of seconds,
hours, and so forth), but other methods disguise them as
flat vectors, giv
right
archive or documentation source that discusses why
objects of class POSIXlt always need to return a
length of 9?
Thanks
Steve McKinney
-Original Message-
From: r-devel-boun...@r-project.org [mailto:r-devel-boun...@r-
project.org] On Behalf Of Benilton Carvalho
Sent: Thursday, November
Hi,
I'm observing the following warning with R-2.10.0 on a machine I have remote
access to. Like what happened to Roger (
http://www.mail-archive.com/r-devel@r-project.org/msg08669.html ), two extra
instances of X11 are open after dev.off(). Although I'm reporting this on
R-2.10.0, it's reprod
Thank you Martin, for putting this together. Cheers, b
On Nov 30, 2009, at 11:10 AM, maech...@stat.math.ethz.ch wrote:
>> Tony Plate
>>on Sun, 22 Nov 2009 10:21:33 -0600 writes:
>
>> maech...@stat.math.ethz.ch wrote:
"PD" == Peter Dalgaard
on Fri, 20 Nov 2009 09:54
How about using:
Enhances: Rmpi
?
b
On Fri, Jan 15, 2010 at 6:00 AM, Ross Boylan wrote:
> I have a package that can use rmpi, but works fine without it. None of
> the automatic test code invokes rmpi functionality. (One test file
> illustrates how to use it, but has quit() as its first comma
your namespace probably contains:
useDynLib(testS4)
but you don't have any compiled code...
remove that line and everything will be fine.
btw, if you're playing with S4, you must import 'methods'
b
On Mar 16, 2007, at 4:55 PM, cstrato wrote:
> Dear all,
>
> Currently, I am trying to create a
> ** save image
> Error in setMethod("export", "derivedClass", export.derivedClass) :
>no existing definition for function "export"
> Error: unable to load R code in package 'mytest'
> Execution halted
>
> What may be the reason for th
, I need to define setGeneric twice, otherwise I get the
> error.
> It is not clear to me, why this is the case?
>
> I know, that BioBase has a file AllGeneric.R, but I would like to
> define
> the generics in the respective methods files.
>
> Best regards
> Christian
not the only possibility.
> BTW, what is a collate field?
>
> Best regards
> Christian
>
> Benilton Carvalho wrote:
>> Well, my understanding is that if you "need" to define it (the
>> generic) twice you're doing something wrong.
>>
>> Do
Biobase itself does.
b
On Mar 16, 2007, at 7:43 PM, cstrato wrote:
> Thank you, I have already read the R-exts manual, but the collate
> field is optional.
> Do you know a package which uses the Collate field so that I can
> study it?
>
> Best regards
> Christian
>
&
debug.affy123 is not a function... it's just a logical flag set in
ProgressBarText.R.
b
On Mar 22, 2007, at 6:22 PM, cstrato wrote:
> Dear all,
>
> The package "affy" has the following statement in file "AffyBatch.R":
> if (debug.affy123) cat("-->initAffyBatch\n")
>
> This is great and I would
ine this flag.
> When I set the flag "debug.mypkg<-T" in the R session, everything
> works,
> but the problem is that if I do not set it, it is undefined. So I
> need to set it
> initially in my package, but where?
>
> Christian
>
> Benilton Carvalho w
Great tip Seth...
thanks a bunch...
b
On Mar 22, 2007, at 9:54 PM, Seth Falcon wrote:
> Benilton Carvalho <[EMAIL PROTECTED]> writes:
>
>> it doesn't matter where..
>>
>> just pick one of your files and set it...
>>
>> of course, your file should
Hi,
(I tried looking for it, but I don't think it was discussed before...
or maybe I didn't use the correct keywords).
I have a package (say, pkg1), which uses NAMESPACE. This package
contains a bunch of functions the are used internally, therefore
they're not exported (say, internalFunc1).
I'm not sure what your sessionInfo() is, but take a look at what I got:
> set.seed(123)
> dat <- data.frame(ID= c(rep(1,2),rep(2,3), rep(3,3), rep(4,4),
+rep(5,5)), var1 =rnorm(17, 35,2), var2=runif(17,0,1))
> dat
ID var1 var2
1 1 33.87905 0.02461368
2 1 34.53965 0.4777959
Won't
ServerAliveInterval 60
in /etc/ssh_config do the job of keeping your connection alive?
And wouldn't it be more appropriate if bitmap() was used instead?
b
On Jul 21, 2007, at 12:23 PM, Vincent Carey 525-2265 wrote:
>
>> Vincent Carey 525-2265 <[EMAIL PROTECTED]> writes:
>>
>>> this is n
also, take a look at the "ff" package.
b
On Feb 14, 2008, at 11:43 AM, Greg Snow wrote:
You may want to look at the SQLiteDF package, this allows you to put
your data into an SQLite database and treat that like a normal
vector or
data frame inside of R.
Hope this helps,
--
Gregory (Greg) L
It's not a bug and it is my understanding that it's documented.
From the man page on jpeg:
They may not be usable unless the X11 display is available to the
owner of the R process.
and later:
'bitmap' provides an alternative way to generate PNG and JPEG
plots that does not dep
all] Error 1
Searching the archive, I did find a similar report (http://
tolstoy.newcastle.edu.au/R/devel/06/01/3699.html) but the proposed
solution did not work for me.
Any suggestion?
Thank you very much,
Benilton Carvalho
PhD Candidate
Department of Biostatistics
Johns Hopkins University
___
Hi Everyone,
when building (say) R-2.4.0 from the source, is it still the
recommendation to use GCC 3.4?
Thank you very much,
Benilton Carvalho
PhD Candidate
Department of Biostatistics
Johns Hopkins University
__
R-devel@r-project.org mailing list
Professor Ripley,
thank you very much for your reply.
I'm currently trying to build R-2.4.0 from the source on a system
(Xeon) running Fedora Core 4.
As for the available compilers: gcc/g++/gfortran/f95 (version 4.0.0-8)
Thank you very much,
Benilton Carvalho
PhD Candidate
Departme
it doesn't appear to be a bug for me, given that one of your
coefficients is NA due to linear dependencies on your design matrix.
i prefer to think of it as a feature :-) (show only the coefficients
for the variables that do not show linear dependencies).
x=1:5
y=c(1:3, 7, 6)
fit=lm(y~x)
coef
Hi Matjaz,
I don't see that as a bug. Instead, you don't have the requirements,
as you already noticed.
Isn't it simpler just to install the requirements?
See:
http://download.opensuse.org/distribution/10.2/repo/oss/suse/i586/
best,
benilton
On Dec 20, 2006, at 2:04 PM, [EMAIL PROTECTED] wr
I do find that info to be useful and would very much appreciate if it is
kept.
b
Brian Ripley wrote:
> Unix versions of R CMD BATCH have reported proc.time() unless the script
> ends in q(). E.g. if the input is 'search()' the output is
>
>> invisible(options(echo = TRUE))
>> search()
> [1] ".G
you don't see the line b/c you're squaring both "pi" and "-pi"
compare that with
lines(c(0,0), c(-1,1)*(2*pi)^2)
b
On Jan 23, 2007, at 10:41 AM, Spencer Graves wrote:
> Consider the following:
>
> plot(0, 0, xlim=c(-10, 10), ylim=c(-50, 50))
> lines(c(0,0), (2*c(-pi, pi))^2)
>
>
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