Re: [Rd] as.data.frame.table() does not recognize default.stringsAsFactors()

2019-03-15 Thread Mychaleckyj, Josyf C (jcm6t)
Peter, Thanks for the response. I have no wish to prolong this and have no axe to grind. I’m sure you were delighted to see another stringsAsFactors issue. Perhaps we talking about the conflation of two steps: the first is the language ‘pure' conversion of the table to a data.frame with the cros

Re: [Rd] as.data.frame.table() does not recognize default.stringsAsFactors()

2019-03-15 Thread Therneau, Terry M., Ph.D. via R-devel
I have to disagree with both Peter and Martin on this. The underneath issue is that the automatic conversion of characters to factors by the data.frame functions was the single most egregious design blunder in the Statistical Models in S book, and we are still living with it.  The stringsAsFac

Re: [Rd] as.data.frame.table() does not recognize default.stringsAsFactors()

2019-03-15 Thread peter dalgaard
My point was that, in a table, the row and columns usually have a well-defined order. If you convert the table to data frame form, typically in order to fit a Poisson GLM, you do want to preserve that order, and not have the levels converted to a locale-dependent alphabetical order in your analy

Re: [Rd] Exit status of Rscript when setting options(error=utils::recover)

2019-03-15 Thread Tomas Kalibera
Please refer to the documentation (?stop, ?recover, ?dump.frames). In non-interactive use, recover() works as dump.frames(). dump.frames() is documented not to quit R, and the examples show how to quit the R session with a given status automatically after dump.frames(). So in line with the d

Re: [Rd] as.data.frame.table() does not recognize default.stringsAsFactors()

2019-03-15 Thread Therneau, Terry M., Ph.D. via R-devel
Peter, we are arguing at cross purposes.  My point was that if I have specified options(stringsAsFactors=FALSE) that is a statement to R to NOT DO THIS.   Your argument in return is that "yes, Therneau said that, but in this case he almost certainly doesn't really mean it, so ignore him".  Now

[Rd] Could we make filled.contour() more suitable for PDF viewers?

2019-03-15 Thread Abs Spurdle
Note that I sent this to r-devel, yesterday. However, it didn't appear on the mailing list. So, I'm resending it. Today, I plotted the following: > filled.contour (,,z, color.palette=terrain.colors) It looked OK, in R. However, when I created a PDF document, the plot (and other similar plots) had