[Rd] failure of make check-all

2017-04-06 Thread Therneau, Terry M., Ph.D.
This run was done this AM on my linux box, and older 32 bit Dell optiplex (core 2 duo). The failure message is at the very end. (It's due to be replaced in a couple of weeks.) The sequence of steps was svn up tools/rsync-recommended ./configure make make check-all |& tee zzz Terry T. Resu

Re: [Rd] failure of make check-all

2017-04-06 Thread peter dalgaard
You may want to retry that after a make distclean, in case anything changed in the toolchain. -pd > On 6 Apr 2017, at 14:43 , Therneau, Terry M., Ph.D. wrote: > > This run was done this AM on my linux box, and older 32 bit Dell optiplex > (core 2 duo). The failure message is at the very end

Re: [Rd] failure of make check-all

2017-04-06 Thread Therneau, Terry M., Ph.D.
Peter, Retry how much of it? That is, where does it go in the sequence from svn up to make check? I'll update my notes so as to do it correctly. In any case, I put it first and reran the whole command chain. I had recently upgraded linux from 14.xx LTS to 16.04 LTS so it makes sense to st

Re: [Rd] failure of make check-all

2017-04-06 Thread peter dalgaard
> On 6 Apr 2017, at 15:51 , Therneau, Terry M., Ph.D. wrote: > > Peter, > Retry how much of it? That is, where does it go in the sequence from svn up > to make check? I'll update my notes so as to do it correctly. From the configure step, I'd expect. Actually, now that I look at your outp

[Rd] [bug] in cut.POSIXt(..., breaks = )

2017-04-06 Thread Xianghui Dong
The exact error was reported before in *Bug 14288* *- **bug in cut.POSIXt(..., breaks = ) and cut.Date. *But the fix in that bug report only covered the simplest case. This is the error I met - x <- structure

Re: [Rd] Very hard to reproduce bug (?) in R-devel

2017-04-06 Thread Winston Chang
With Luke Tierney's assistance, we found that the root cause of the problem was not R, but a race condition in the pool package that occurred when a finalizer ran. Below is a very contrived and simplified example to illustrate: gc() n <- 1 increment_n <- function() { cat(n, "-", sep = "") #