[Rd] Documentation error in subsitute

2013-04-03 Thread Hadley Wickham
Hi all, The documentation for substitute currently reads: Substitution takes place by examining each component of the parse tree as follows: If it is not a bound symbol in ‘env’, it is unchanged. If it is a promise object, i.e., a formal argument to a function or explicitly created using ‘delaye

[Rd] R-3.0.0 reg-tests-3.R / survival

2013-04-03 Thread Paul Gilbert
"make check" is failing on reg-test3.R with a message that survival was built with an older version of R. (On my Ubuntu 32 bit and Ubuntu 64 bit machines). Why would "make check" be looking anywhere that it would find something built with an older version of R? ~/RoboAdmin/R-3.0.0/tests$ ta

[Rd] R-package preparation --as-cran behaving unexpectedly

2013-04-03 Thread Stefan Boehringer
Dear all, I am trying to submit an R-package to CRAN. In preparation I do run R_INSTALL_TAR=/bin/tar R CMD check --as-cran parallelize.dynamic_0.9.tar.gz and the command finishes without warnings or errors. As a final output I get NOTE: There was 1 note. See ‘.../Rpackages/parallelize.dynamic/

Re: [Rd] R-package preparation --as-cran behaving unexpectedly

2013-04-03 Thread Duncan Murdoch
On 03/04/2013 7:25 AM, Stefan Boehringer wrote: Dear all, I am trying to submit an R-package to CRAN. In preparation I do run R_INSTALL_TAR=/bin/tar R CMD check --as-cran parallelize.dynamic_0.9.tar.gz and the command finishes without warnings or errors. As a final output I get NOTE: There wa

Re: [Rd] R-3.0.0 reg-tests-3.R / survival

2013-04-03 Thread peter dalgaard
Any chance that you might have a personal library, which isn't versioned? If you do and you for some reason installed survival into it, it would explain it. E.g., I have, with the system-wide R > .libPaths() [1] "/Users/pd/Library/R/2.15/library" [2] "/op

Re: [Rd] R-package preparation --as-cran behaving unexpectedly

2013-04-03 Thread Paul Gilbert
On 13-04-03 11:31 AM, Duncan Murdoch wrote: On 03/04/2013 7:25 AM, Stefan Boehringer wrote: Dear all, I am trying to submit an R-package to CRAN. In preparation I do run R_INSTALL_TAR=/bin/tar R CMD check --as-cran parallelize.dynamic_0.9.tar.gz and the command finishes without warnings or

Re: [Rd] Documentation error in subsitute

2013-04-03 Thread Gabor Grothendieck
On Wed, Apr 3, 2013 at 10:38 AM, Hadley Wickham wrote: > Hi all, > > The documentation for substitute currently reads: > > Substitution takes place by examining each component of the parse > tree as follows: If it is not a bound symbol in ‘env’, it is > unchanged. If it is a promise object, i.e.,

Re: [Rd] R-3.0.0 reg-tests-3.R / survival

2013-04-03 Thread Paul Gilbert
"make check" seems to be picking up the setting of my R_LIBS_SITE which is still set for 2.15.3 and had survival in it. At least, when I set that to empty then the check passes. I'm not sure if checking worked like that before, I don't think so. I have not usually had base packages in my si

Re: [Rd] Redefining quote() with reference classes (was: Ref classes initFields has incorrect environment?)

2013-04-03 Thread John Chambers
This should now be fixed in r-devel and 3.0.0 Patched as of revision 62487. On Mar 29, 2013, at 11:30 AM, John Chambers wrote: > Nothing to do with initFields. If you trace your redefined quote(), it's > called from the <<- assignment of x. > > The "x" element in the environment for the refer