Re: [Rd] Request for more flexibility in heatmap() width / height ratio

2013-03-13 Thread Prof Brian Ripley
On 12/03/2013 16:44, Sylvain Mareschal wrote: Hi R users, I'm a quite extensive user of the heatmap() function, and as many others i'm frequently frustrated by its fixed square width / height ratio. Here is a typical example : dev.new() heatmap(matrix(rnorm(1200), nrow=10)) I have

[Rd] removing union class

2013-03-13 Thread Renaud Gaujoux
Hi, I get the following error when trying to remove a union class: > setClassUnion('a', c('matrix', 'numeric')) > removeClass('a') > sessionInfo() R version 2.15.3 (2013-03-01) Platform: i686-pc-linux-gnu (32-bit) locale: [1] LC_CTYPE=en_US.UTF-8 LC_NUMERIC=C [3] LC_TIME=en_US.UTF-8

Re: [Rd] R-devel Digest, Vol 121, Issue 13

2013-03-13 Thread Terry Therneau
I think it would be a good idea. Several versions of the survival package had a duplicate line in the S3methods, and were missing a line that should have been there, due to a cut/paste error. Terry T. On 03/13/2013 06:00 AM, r-devel-requ...@r-project.org wrote: Circa 80 CRAN and core-R pac

[Rd] Registering method for "t.test"

2013-03-13 Thread Lukas Lehnert
Dear R-developers, in a new package, I'm currently working on, I tried to add a new method to function "t.test". The new class, on which the method is based, is called "speclib", so I defined the funcion for the new method as "t.test.speclib". R CMD check now gives always a warning, that S3 met

[Rd] Failed to locate 'weave' output file / vignette product does not have a known filename extension

2013-03-13 Thread Dan Tenenbaum
Hello, I'm seeing three different vignette-related errors with recent versions of R-3.0.0 alpha. First, with the package BitSeq (http://bioconductor.org/packages/2.12/bioc/html/BitSeq.html), I get the following when trying to build the package: Error: processing vignette ’BitSeq.Rnw' failed with

[Rd] S4 generic not exported correctly / incorrect dispatch?

2013-03-13 Thread Martin Morgan
In this post https://stat.ethz.ch/pipermail/bioc-devel/2013-March/004152.html a package author reports that S4 dispatch fails. I can reproduce this with a PkgA (attached; 'intervals' is a relatively light-weight CRAN package) that has DESCRIPTION with Depends: intervals Imports: graphics

Re: [Rd] Failed to locate 'weave' output file / vignette product does not have a known filename extension

2013-03-13 Thread Henrik Bengtsson
Hi, I contributed code to R r62130 which may be responsible for that (not sure). I'll investigate as soon as got the time. /Henrik On Wed, Mar 13, 2013 at 10:17 AM, Dan Tenenbaum wrote: > Hello, > > I'm seeing three different vignette-related errors with recent > versions of R-3.0.0 alpha. > >