[Rd] Licensing concerns in porting S-Plus code to R libraries

2012-10-16 Thread Chris Green
I used S-Plus for many years, and developed lots of code for my research. When I switched to R a few years ago, I ported most of my S-Plus code over to R for my own use. Now that some of this code is quite polished, I would like to make it available as an R package on CRAN. Some of my S-Plus code,

Re: [Rd] Licensing concerns in porting S-Plus code to R libraries

2012-10-16 Thread Duncan Murdoch
On 12-10-15 8:38 PM, Chris Green wrote: I used S-Plus for many years, and developed lots of code for my research. When I switched to R a few years ago, I ported most of my S-Plus code over to R for my own use. Now that some of this code is quite polished, I would like to make it available as an R

[Rd] possible bug in print.bibentry

2012-10-16 Thread Kasper Daniel Hansen
bsseq is a Bioconductor package. I think the main issue here is that CITATION has a volume field, like bibentry("Article", title = "{BSmooth: from whole genome bisulfite sequencing reads to differentially methylated regions}", author = personList( person(c("Kasper", "D.

[Rd] Do *not* pass '...' to NextMethod() - it'll do it for you; missing documentation, a bug or just me?

2012-10-16 Thread Henrik Bengtsson
Hi, although I've done S3 dispatching for more than a decade now, I think I managed to overlook/avoid the following pitfall when using NextMethod(): If you explicitly pass argument '...' to NextMethod(), you will effectively pass those argument twice to the "next" method! EXAMPLE: foo0 <- func

Re: [Rd] Do *not* pass '...' to NextMethod() - it'll do it for you; missing documentation, a bug or just me?

2012-10-16 Thread Simon Urbanek
On Oct 16, 2012, at 9:53 PM, Henrik Bengtsson wrote: > Hi, > > although I've done S3 dispatching for more than a decade now, I think > I managed to overlook/avoid the following pitfall when using > NextMethod(): > > If you explicitly pass argument '...' to NextMethod(), you will > effectively p

Re: [Rd] Do *not* pass '...' to NextMethod() - it'll do it for you; missing documentation, a bug or just me?

2012-10-16 Thread Henrik Bengtsson
Hi Simon, thanks for the prompt reply. Comments below... On Tue, Oct 16, 2012 at 7:35 PM, Simon Urbanek wrote: > > On Oct 16, 2012, at 9:53 PM, Henrik Bengtsson wrote: > >> Hi, >> >> although I've done S3 dispatching for more than a decade now, I think >> I managed to overlook/avoid the followi