Re: [Rd] Using custom R_LIBS with R CMD install

2012-02-09 Thread Uwe Ligges
On 08.02.2012 21:05, Hadley Wickham wrote: 2012/2/8 Uwe Ligges: On 08.02.2012 19:36, Hadley Wickham wrote: I wonder it works that far. It won't for me on Windows nor Linux, because system2 passes the whole thing shQuoted to the shell. Hence it is highly shell dependent what happens with th

Re: [Rd] Using custom R_LIBS with R CMD install

2012-02-09 Thread Hadley Wickham
>> >> To clarify, system2 doesn't work in windows? > > It does. > >> The system2 >> >> documentation has: " On Windows, ‘env’ is currently only supported for >> commands such as ‘R’ and ‘make’ which accept environment variables on >> their command line." > > Yes, but "R CMD INSTALL" does not accept

Re: [Rd] FORTRAN compilation error

2012-02-09 Thread David L Lorenz
I should also have explained that I was using the default Makeconf file in R-2.14.1\etc\i386. it is reproduced below. I've tried it on other packages and it inserts a z in front of the object files. Dave #-*- Makefile -*- # $(R_HOME}/etc$(R_ARCH)/Makeconf # Hand-edited version for gnuwin32. if

Re: [Rd] FORTRAN compilation error

2012-02-09 Thread Simon Urbanek
On Feb 9, 2012, at 9:54 AM, David L Lorenz wrote: > > I should also have explained that I was using the default Makeconf file in > R-2.14.1\etc\i386. it is reproduced below. I've tried it on other packages > and it inserts a z in front of the object files. I'm not talking about R Makeconf, bu

Re: [Rd] FORTRAN compilation error

2012-02-09 Thread David L Lorenz
Simon, It was not clear that I needed any makefiles in src. I have seen no documentation anywhere that I needed a makefile in src. The FORTRAN source compiles just fine by hand, so the error is not in the code. It is just one single source code file with one subroutine. The problem appears

Re: [Rd] FORTRAN compilation error

2012-02-09 Thread Simon Urbanek
David, On Feb 9, 2012, at 10:48 AM, David L Lorenz wrote: > > Simon, > It was not clear that I needed any makefiles in src. I have seen no > documentation anywhere that I needed a makefile in src. You don't - I thought you are using one to modify the object list. Simple output of ls -l in

[Rd] na.omit option in prcomp: formula interface only

2012-02-09 Thread Ben Bolker
This is a wishlist/request for discussion about the behaviour of the na.action option in prcomp, specifically the fact that it only applies to the formula interface. I had a question from a friend (who is smart and careful and generally R's TFM, although like all of us he misses things somet