Re: [Rd] How to get R to compile with PNG support

2011-04-20 Thread Sharpie
Dear R devel list, Good morning; I'm with the Sage (http://www.sagemath.org) project. (Some of you might have seen my talk on this at last summer's useR conference). Thanks for stoping by Karl! I have to say that I am a big fan of the Sage project---it is a very good idea and I really appreciate

Re: [Rd] Sweave tokens not in column 1: enhancement request

2011-04-20 Thread Friedrich Leisch
> On Tue, 19 Apr 2011 13:59:44 -0700 (PDT), > David Epstein (DE) wrote: > When I re-use a code chunk in Sweave, together with keep.source=TRUE, I would > like to follow usual programming conventions in which the amount of white > space on the left indicates logical structure. It see

Re: [Rd] self-referential representations in S4

2011-04-20 Thread John Chambers
The warning is there because all is not "just fine", in general and in particular not in your example. If a superclass is not virtual, the prototype object for the new class must have a member of that class in the appropriate slot. How could it do so in this case? As a result, your class wil

[Rd] Make as.factor an S3 generic?

2011-04-20 Thread Martin Morgan
as.factor / as.ordered is not written as a generic. This differs from as.numeric, as.matrix, and other as.*. The following seems to address this and does not break make check-all. FWIW, the patch is against r55563, because with r55564 I see /home/mtmorgan/src/R-devel/src/main/dounzip.c:75:15:

Re: [Rd] Make as.factor an S3 generic?

2011-04-20 Thread William Dunlap
> -Original Message- > From: r-devel-boun...@r-project.org > [mailto:r-devel-boun...@r-project.org] On Behalf Of Martin Morgan > Sent: Wednesday, April 20, 2011 9:56 AM > To: R-devel@r-project.org > Subject: [Rd] Make as.factor an S3 generic? > > as.factor / as.ordered is not written as a

Re: [Rd] Sweave support added to rgl package

2011-04-20 Thread Sharpie
Duncan Murdoch-2 wrote: > > I have just committed some code to the rgl package on > https://r-forge.r-project.org/projects/rgl/ to allow rgl images to be > inserted into Sweave documents. (This is not in the CRAN version yet.) > It makes use of the custom graphics driver support added by Bri

Re: [Rd] Patching "update.packages" to enable updating of only a user defined subset of packages

2011-04-20 Thread Sharpie
Tal Galili wrote: > > Hello dear R developers, > > I recently found out that it is not possible to limit update.packages() to > update only a few packages at a time. > > The patch offered simply adds a 'subset' parameter and the statement > bounded > within "if(!missing(subset))" to implement i

Re: [Rd] Sweave support added to rgl package

2011-04-20 Thread Dominick Samperi
On Tue, Apr 19, 2011 at 2:18 PM, Duncan Murdoch wrote: > I have just committed some code to the rgl package on > https://r-forge.r-project.org/projects/rgl/ to allow rgl images to be > inserted into Sweave documents.  (This is not in the CRAN version yet.)  It > makes use of the custom graphics dr

Re: [Rd] Sweave support added to rgl package

2011-04-20 Thread Duncan Murdoch
On 20/04/2011 1:52 PM, Dominick Samperi wrote: On Tue, Apr 19, 2011 at 2:18 PM, Duncan Murdoch wrote: > I have just committed some code to the rgl package on > https://r-forge.r-project.org/projects/rgl/ to allow rgl images to be > inserted into Sweave documents. (This is not in the CRAN ve

Re: [Rd] Sweave support added to rgl package

2011-04-20 Thread Duncan Murdoch
On 20/04/2011 1:28 PM, Sharpie wrote: Duncan Murdoch-2 wrote: > > I have just committed some code to the rgl package on > https://r-forge.r-project.org/projects/rgl/ to allow rgl images to be > inserted into Sweave documents. (This is not in the CRAN version yet.) > It makes use of the custo

Re: [Rd] Make as.factor an S3 generic?

2011-04-20 Thread Prof Brian Ripley
Well, lots of functions are not generic. We do ask you to give a case for such changes ... where is it? On Wed, 20 Apr 2011, Martin Morgan wrote: as.factor / as.ordered is not written as a generic. This differs from as.numeric, as.matrix, and other as.*. The following seems to address this a

Re: [Rd] Make as.factor an S3 generic?

2011-04-20 Thread Martin Morgan
On 04/20/2011 10:13 AM, William Dunlap wrote: -Original Message- From: r-devel-boun...@r-project.org [mailto:r-devel-boun...@r-project.org] On Behalf Of Martin Morgan Sent: Wednesday, April 20, 2011 9:56 AM To: R-devel@r-project.org Subject: [Rd] Make as.factor an S3 generic? as.factor /

Re: [Rd] Make as.factor an S3 generic?

2011-04-20 Thread Martin Morgan
On 04/20/2011 11:38 AM, Prof Brian Ripley wrote: Well, lots of functions are not generic. We do ask you to give a case for such changes ... where is it? The specific need started with base::lapply, which calls base::as.list. An S4 method "as.list,A-method" defined in a name space isn't seen by

[Rd] possible minor bug in fisher.test

2011-04-20 Thread Fay, Michael (NIH/NIAID) [E]
Hi, I received a bug report for my exact2x2 package that seems to apply to fisher.test in the stats package also. Here is some code which creates the error: >x<-factor(c(0,1,1),levels=c(0,1)) > y<-factor(c(1,1,1),levels=c(0,1)) > fisher.test(x,y) Error in fisher.test(x, y) : 'x' and 'y' must h

Re: [Rd] possible minor bug in fisher.test

2011-04-20 Thread peter dalgaard
On Apr 20, 2011, at 21:30 , Fay, Michael (NIH/NIAID) [E] wrote: > Hi, > > I received a bug report for my exact2x2 package that seems to apply to > fisher.test in the stats package also. > > Here is some code which creates the error: > >> x<-factor(c(0,1,1),levels=c(0,1)) >> y<-factor(c(1,1,1)

Re: [Rd] Sweave support added to rgl package

2011-04-20 Thread Dominick Samperi
On Wed, Apr 20, 2011 at 2:29 PM, Duncan Murdoch wrote: > On 20/04/2011 1:52 PM, Dominick Samperi wrote: >> >> On Tue, Apr 19, 2011 at 2:18 PM, Duncan Murdoch >>  wrote: >> >  I have just committed some code to the rgl package on >> >  https://r-forge.r-project.org/projects/rgl/ to allow rgl image

Re: [Rd] Sweave support added to rgl package

2011-04-20 Thread Duncan Murdoch
On 20/04/2011 7:10 PM, Dominick Samperi wrote: On Wed, Apr 20, 2011 at 2:29 PM, Duncan Murdoch wrote: On 20/04/2011 1:52 PM, Dominick Samperi wrote: On Tue, Apr 19, 2011 at 2:18 PM, Duncan Murdoch wrote: I have just committed some code to the rgl package on https://r-forge.r-project

Re: [Rd] How to get R to compile with PNG support

2011-04-20 Thread Karl-Dieter Crisman
> Message: 12 > Date: Wed, 20 Apr 2011 02:09:23 -0700 (PDT) > From: Sharpie > To: r-devel@r-project.org > Subject: Re: [Rd] How to get R to compile with PNG support > Message-ID: <1303290563237-3462502.p...@n4.nabble.com> > Content-Type: text/plain; charset=UTF-8 > > > Dear R devel list, > > Good

Re: [Rd] Sweave tokens not in column 1: enhancement request

2011-04-20 Thread David.Epstein
Friedrich Leisch-2 wrote: > >> On Tue, 19 Apr 2011 13:59:44 -0700 (PDT), >> David Epstein (DE) wrote: > > > When I re-use a code chunk in Sweave, together with keep.source=TRUE, > I would > > like to follow usual programming conventions in which the amount of > white > > space on t

[Rd] FW: [Rcpp-devel] Question on 5.6 Interfacing C++ code

2011-04-20 Thread Sean Robert McGuffee
Hi, apparently I sent my question about using R and C++ to the wrong list, ironically seeing as that list was called Rcpp. Anyway, I was directed to post my question here. To summarize my current question, I have found two commands that I want to be able to put into a package. The commands are 'R C