Re: [Rd] strange bug? with R CMD check

2009-07-22 Thread Kjell Konis
Yes, I managed to work around the problem. You can still reproduce the strange behavior with revision 5 of the package though. svn checkout svn://svn.r-forge.r-project.org/svnroot/sbr/p...@5 safeBinaryRegression Kjell On 22 juil. 09, at 07:31, Paul Johnson wrote: I am guessing you solve

Re: [Rd] Rcmd check fails on Windows Samba network path in R 2.9.1

2009-07-22 Thread Henrik Bengtsson
See r-devel thread '[Rd] file.access() on network (mounted) drive on Windows Vista' on Nov 26, 2008: http://tolstoy.newcastle.edu.au/R/e5/devel/08/11/0806.html where it was concluded that file.access() is "not 100%", e.g. file.access() and file.info() can give different answers. I added fileAc

Re: [Rd] Improvement of [dpq]wilcox functions

2009-07-22 Thread Ivo Ugrina
Ivo Ugrina wrote: > Hi, > > I believe I have significantly improved [dpq]wilcox > functions by implementing Harding's algorithm: > Harding, E.F. (1984): An Efficient, Minimal-storage Procedure > for Calculating the Mann-Whitney U, Generalized U and Similar > Distributions, App. Statist., 33, 1-6 >

Re: [Rd] matrix algebra in c

2009-07-22 Thread Markus Jochmann
> 1. use F77_CALL() to call matrix multiplication functions from blas. > This should be ok as long as I remember that c and FORTRAN store > matrices differently. Concerning 1. you might want to look at some C++ wrapper for BLAS and Lapack like http://flens.sourceforge.net, this makes things easie

Re: [Rd] Rcmd check fails on Windows Samba network path in R 2.9.1

2009-07-22 Thread Kevin R. Coombes
Hi, Thanks; that confirms that the problem originates where I thought it did, and provides a fix from within R. However, the original problem was that running "Rcmd check" from a Windows/DOS command prompt on a package on a mounted Samba network drive fails. The failure occurs because of th

[Rd] Link to documentation in another package

2009-07-22 Thread ONKELINX, Thierry
Dear all, One of the functions that I wrote (ggsave.latex) extents the functionality of a function (ggsave) in another package (ggplot2). Instead of copying all the information I would like to create a link in the helpfile of ggsave.latex to the helpfile of ggsave. I tried \code{\link{ggsave}} and

Re: [Rd] Link to documentation in another package

2009-07-22 Thread Nicholas L Crookston
Try this: \code{\link[ggplot2]{ggsave}} Nicholas L. Crookston, Operations Research Analyst Rocky Mountain Research Station USDA Forest Service 1221 South Main, Moscow, ID 83843 Office: (208) 883-2317, FAX: (208) 883-2318 EMail: ncrooks...@fs.fed.us "ONKELINX, Thierry" Sent by: r-devel-boun.

[Rd] maximum supported lag is 350

2009-07-22 Thread Matteo Bertini
I have found a strange error: > fit = Arima(flow, c(1,0,1), list(order=c(0,1,1), period=96*7)) Error in makeARIMA(trarma[[1L]], trarma[[2L]], Delta, kappa) : maximum supported lag is 350 Is in fact quite common to have a lag > 350 using a weekly period in 15min steps = 672 (standard in traffi

Re: [Rd] Rcmd check fails on Windows Samba network path in R 2.9.1

2009-07-22 Thread Duncan Murdoch
On 7/22/2009 9:10 AM, Kevin R. Coombes wrote: Hi, Thanks; that confirms that the problem originates where I thought it did, and provides a fix from within R. However, the original problem was that running "Rcmd check" from a Windows/DOS command prompt on a package on a mounted Samba network

Re: [Rd] Link to documentation in another package

2009-07-22 Thread ONKELINX, Thierry
Thanks. That did solve my problem. ir. Thierry Onkelinx Instituut voor natuur- en bosonderzoek / Research Institute for Nature and Forest Cel biometrie, methodologie en kwaliteitszorg / Section biometrics, methodology

Re: [Rd] Rcmd check fails on Windows Samba network path in R 2.9.1

2009-07-22 Thread Simon Urbanek
On Jul 22, 2009, at 10:28 , Duncan Murdoch wrote: On 7/22/2009 9:10 AM, Kevin R. Coombes wrote: Hi, Thanks; that confirms that the problem originates where I thought it did, and provides a fix from within R. However, the original problem was that running "Rcmd check" from a Windows/DOS com

Re: [Rd] Improvement of [dpq]wilcox functions

2009-07-22 Thread Olaf Mersmann
Hi Ivo, Excerpts from Ivo Ugrina's message of Thu Jul 09 17:05:27 +0200 2009: > I believe I have significantly improved [dpq]wilcox > functions by implementing Harding's algorithm: > Harding, E.F. (1984): An Efficient, Minimal-storage Procedure > for Calculating the Mann-Whitney U, Generalized U a

[Rd] inclusion of a new bandwidth selector for kernel density estimation in R stats

2009-07-22 Thread Jason Liao
I understand that Prof. Ripley is largely responsible for the many kernel density estimation functions in R, especially the bw.SJ functions for the popular Sheather and Jones bandwidth selector. We have recently developed a new bandwidth selector that significantly improves SJ selector for difficul

[Rd] ks.test - The two-sample two-sided Kolmogorov-Smirnov test with ties (PR#13848)

2009-07-22 Thread tpw
Full_Name: Thomas Waterhouse Version: 2.9.1 OS: OS X 10.5.7 Submission from: (NULL) (216.239.45.4) ks.test uses a biased approximation to the p-value in the case of the two-sample test with ties in the pooled data. This has been justified in R in the past by the argument that the KS test assumes