No segfault with my r-patched version on linux-i686:
> set.seed(1); x <- ts(20*sin((1:731)*2*pi/365) + 10 + rnorm(731, 0, 4),
> freq=365)
> arima(x, c(1, 0, 1), c(1, 0, 1))
Errore: cannot allocate vector of size 1010.9 Mb
F.
> R.version
_
platform i686-pc-linux-gnu
arch
On Thu, 12 Jun 2008, Antonio, Fabio Di Narzo wrote:
No segfault with my r-patched version on linux-i686:
set.seed(1); x <- ts(20*sin((1:731)*2*pi/365) + 10 + rnorm(731, 0, 4), freq=365)
arima(x, c(1, 0, 1), c(1, 0, 1))
Errore: cannot allocate vector of size 1010.9 Mb
Yes, you need a lot of
This is to announce that we plan to release R version 2.7.1 on Monday,
June 23, 2008.
Release procedures start tomorrow, Friday June 13.
The source tarballs will be made available daily (barring build
troubles) by a cron job running at 4AM CET, and the tarballs can be
picked up at
http://cran.r-
(Resent, now with correct date in subject. Doh!)
This is to announce that we plan to release R version 2.7.1 on Monday,
June 23, 2008.
Release procedures start tomorrow, Friday June 13.
The source tarballs will be made available daily (barring build
troubles) by a cron job running at 4AM CET, an
I get the same behaviour on R version 2.7.0 Patched (2008-06-05 r45857),
Opensuse 10.3 x86_64 (32 Gb RAM)
> set.seed(1); x <- ts(20*sin((1:731)*2*pi/365) + 10 + rnorm(731, 0, 4),
freq=365)
> arima(x, c(1, 0, 1), c(1, 0, 1))
*** caught segfault ***
address 0x2aafb83e9f50, cause 'memory not mapped
On Thu, 12 Jun 2008, Ray Brownrigg wrote:
> arima() crashes R (segfault) with Linux R-2.7.0, Solaris R-2.6.0:
>
> Reproduce by:
>
> # 2 years of daily temperature data
> set.seed(1); x <- ts(20*sin((1:731)*2*pi/365) + 10 + rnorm(731, 0, 4),
> freq=365)
> arima(x, c(1, 0, 1), c(1, 0, 1))
I put a
Dirk,
Configure concluded without errors. I am not running this on the HPC
cluster with icc, rather a separate local box used for testing and
learning. Its just an 64-bit Ubuntu 8.04 install on a 4-core machine.
LAM is not installed (I checked to make sure).
So, that leaves me with you last two o
simply cd to $R_HOME/library/Rmpi/libs and do on the command line
ldd -r Rmpi.so
this will display you a list of dependencies of Rmpi.so and you can see
if you find there the libraries that you expected to link against, or
there will be some libraries from unexpected paths or missing ones
Ma
Oleg Sklyar wrote:
simply cd to $R_HOME/library/Rmpi/libs and do on the command line
ldd -r Rmpi.so
I think you'll want to
R CMD ldd $R_HOME/library/Rmpi/libs/Rmpi.so
which picks up the R configuration environment, e.g., compare BLAS below:
[EMAIL PROTECTED]:~/> R CMD ldd $R_HOME/library/st
On 12 June 2008 at 18:38, Mark Kimpel wrote:
| Dirk,
|
| Configure concluded without errors. I am not running this on the HPC
| cluster with icc, rather a separate local box used for testing and
| learning. Its just an 64-bit Ubuntu 8.04 install on a 4-core machine.
| LAM is not installed (I chec
Dirk,
Did R CMD ldd $R_HOME/library/Rmpi/libs/Rmpi.so as suggested and
things looked okay. Not really wanting to mess with the debugger I
decided to use your prepackaged version. I completely uninstalled all
openmpi packages on my system using Synaptic and deleted my compiled
from source Rmpi from
Thanks Patrick, your function is a neat work-around to include trailing
zeroes when specifying significant digits.
It worked better with this modification to the "format" arguments: =20
else if (sigdigs<=3Dleft+right)
{out<-format(signum,nsmall=3Dsigdigs-left)}
Agree would be nice to include thi
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