Dear R users,
I am writing binding from C library to R.
I use R 2.4.1, windows XP, and MinGW.
commands
set PKG_CPPFLAGS="-I../sources" "-I."
set PKG_LIBS="-Lc:/mingw/lib" -lfl -liberty
set DEBUG=T
R CMD SHLIB -d --output=Rsnns.dll [ list of all C sources]
produce the DLL having all defined
On Mon, Feb 05, 2007 at 01:28:24AM -0800, Vladimir Eremeev wrote:
> I am writing binding from C library to R.
> I use R 2.4.1, windows XP, and MinGW.
> R CMD SHLIB -d --output=Rsnns.dll [ list of all C sources]
> R CMD SHLIB -d --output Rsnns.dll Rsnns.c
> -Wl,-Lc:/mingw/lib,-lfl,-L../sources,-
Andrew Piskorski wrote:
>
> On Mon, Feb 05, 2007 at 01:28:24AM -0800, Vladimir Eremeev wrote:
>> I am writing binding from C library to R.
>> I use R 2.4.1, windows XP, and MinGW.
>
>> R CMD SHLIB -d --output=Rsnns.dll [ list of all C sources]
>
>> R CMD SHLIB -d --output Rsnns.dll Rsnns.c
>>
Vladimir Eremeev wrote:
>
>
> It calls gcc:
> gcc "-I../sources" "-I." -IC:/PROGRA~1/R/include -gdwarf-2 -Wall -O2
> -std=gnu99 -c rsnns.c -o rsnns.o
> gcc -shared -o Rsnns.dll Rsnns.def [ lots of *.o ] -LC:/PROGRA~1/R/bin
> "-Lc:/mingw/lib" -lfl -liberty -lR
>
> The file Rsnns.def
It is a bit different on Windows, since it is making a DLL and GNU ld has
lots of special-casing for those.
To see how to do it, look at the standard package 'stats'. That has a
.def file and it works. The naming convention is probably what you
missed. (Also, things have changed since R 2.2.
On Mon, 5 Feb 2007, Vladimir Eremeev wrote:
> Vladimir Eremeev wrote:
Something important is missing here!
>> It calls gcc:
>> gcc "-I../sources" "-I." -IC:/PROGRA~1/R/include -gdwarf-2 -Wall -O2
>> -std=gnu99 -c rsnns.c -o rsnns.o
>> gcc -shared -o Rsnns.dll Rsnns.def [ lots of *.o ] -
Generator Microsoft Word 11 (filtered medium) Hi,
I'm the mannova package maintainer. We used La.svd(X, method="dgesvd") in
maanova package before. After R-2.3.0, the old La.svd() method was deprecated
for option method="dgesvd". I changed maanova code correspondingly, which will
call method="d
Hi,
On my system, I get the following error message:
> big <- 2:(2**30)
Error: cannot allocate vector of size 0 Kb
Note the wrong "size 0 Kb" in the message!
Cheers,
H.
> sessionInfo()
R version 2.5.0 Under development (unstable) (2007-01-05 r40386)
i686-pc-linux-gnu
locale:
LC_CTYPE=en_
Dear Jochen
Thank you, there seems to be a problem with accessing memory but
probably not in my simple program.
Here are the essential parts:
1. R-function:
"writeFileCpp" <-
function(outfile=character(0)) {
r <- .C("WriteFileCpp",as.character(outfile), PACKAGE="MyClass");
return();
}
2.
Thank you for the prompt and helpful replies. We're embarrassed to
report that the problem was far more mundane: a lonely uninitialized
integer pointer.
On the bright side, we now have a far deeper understanding of SEXP i/o.
Rest assured, the C-coding team (that would be me) has be duly spanked
my R-SVN revision is 40458 compared to 40386 yours, could it be
corrected already?
* ~: R
> 2**30
[1] 1073741824
> a<-2:1073741824
Error: cannot allocate vector of size 4194304 Kb
> sessionInfo()
R version 2.5.0 Under development (unstable) (2007-01-22 r40548)
x86_64-unknown-linux-gnu
locale:
Oleg Sklyar wrote:
> my R-SVN revision is 40458 compared to 40386 yours, could it be
> corrected already?
>
> * ~: R
> > 2**30
> [1] 1073741824
> > a<-2:1073741824
> Error: cannot allocate vector of size 4194304 Kb
>
There could be system dependencies. I get
> a<-2:1073741824
> a<-2:(2**30)
Hi,
On Windows, with last R-devel tarball (r40647) from
ftp://ftp.stat.math.ethz.ch/Software/R/R-devel_2007-02-04.tar.gz
I get the following build error:
E:\biocbld\bbs-2.0-bioc\R\src\gnuwin32> make
...
...
-- Making package utils
adding build stamp to DESCRIPTION
inst
Herve, it looks like 64-bit. I just tried another 32 bit version:
Windows build R-2.4.1 under VMWare on the same 64 bit Ubuntu as in my
post above and Windows version shows the same bug as you report:
R2.4.1 on Windows 2000 as guest system in VMWare Ubuntu 6.10 64bit
---
> big <- 2:(2**
Oleg Sklyar wrote:
> Herve, it looks like 64-bit. I just tried another 32 bit version:
> Windows build R-2.4.1 under VMWare on the same 64 bit Ubuntu as in my
> post above and Windows version shows the same bug as you report:
>
> R2.4.1 on Windows 2000 as guest system in VMWare Ubuntu 6.10 64bit
>
Hi Oleg,
Oleg Sklyar wrote:
> my R-SVN revision is 40458 compared to 40386 yours, could it be
> corrected already?
No I don't think so. Maybe an architecture specific problem?
You are on a 64-bit system, I'm on a 32-bit system.
I was able to reproduce on 3 systems so far (with any version of R):
Herve Pages wrote:
> Hi Oleg,
>
> Oleg Sklyar wrote:
>> my R-SVN revision is 40458 compared to 40386 yours, could it be
>> corrected already?
>
> No I don't think so. Maybe an architecture specific problem?
> You are on a 64-bit system, I'm on a 32-bit system.
>
> I was able to reproduce on 3 sy
This was fixed in SVN within a few hours. Tarballs are snapshots, please
check SVN before reporting problems.
As I have said several times, please do not expect R-devel to build on all
platforms at all times.
On Mon, 5 Feb 2007, [EMAIL PROTECTED] wrote:
> Hi,
>
>
> On Windows, with last R-dev
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