Re: [Rd] Rgui crash under Windows

2006-06-12 Thread Simone Giannerini
Dear Duncan, thank you very much for your reply, just for the sake of precision I missed a 'not' in my report, actually I intended: "the same does not happen under linux (SUSE 10.0), details follow" as I was not able to reproduce it under Linux, sorry for the inconvenience. Regards, Simone

[Rd] Making a windows packages with zip

2006-06-12 Thread hadley wickham
In the past I have been able to make windows packages (containing only R code) from my mac by simply zipping the installed package directory, eg. R CMD install asmrsim cd ~/Library/R/library/ zip -r9X asmrsim asmrsim (using code copied from this list, from Duncan Murdoch, I think) However, since

Re: [Rd] Making a windows packages with zip

2006-06-12 Thread Uwe Ligges
hadley wickham wrote: > In the past I have been able to make windows packages (containing only > R code) from my mac by simply zipping the installed package directory, > eg. > > R CMD install asmrsim > cd ~/Library/R/library/ > zip -r9X asmrsim asmrsim > > (using code copied from this list, from

Re: [Rd] Rgui crash under Windows

2006-06-12 Thread Duncan Murdoch
On 6/12/2006 4:52 AM, Simone Giannerini wrote: > Dear Duncan, > > thank you very much for your reply, just for the sake of precision > I missed a 'not' in my report, actually I intended: > > "the same does not happen under linux (SUSE 10.0), details follow" > > as I was not able to reproduce it

Re: [Rd] Making a windows packages with zip

2006-06-12 Thread hadley wickham
> > Either the latter or ask the Windows users to install the source package. > Installing a source package doesn't seem to help: > install.packages("classifly", repos="http://ggobi.org/r/";, type="source") Warning message: installation of package 'classifly' had non-zero exit status in: install.

[Rd] Ruuid had non-zero exit status (PR#8965)

2006-06-12 Thread zph
> source("http://www.bioconductor.org/biocLite.R";) > biocLite(c("Ruuid")) Running getBioC version 0.1.6 with R version 2.3.1 Running biocinstall version 1.8.4 with R version 2.3.1 Your version of R requires version 1.8 of Bioconductor. trying URL 'http://bioconductor.org/packages/1.8/bioc/src/con

[Rd] Ruuid had non-zero exit status (PR#8966)

2006-06-12 Thread manager
<> --please do not edit the information below-- Version: platform = sparc-sun-solaris2.9 arch = sparc os = solaris2.9 system = sparc, solaris2.9 status = major = 2 minor = 3.1 year = 2006 month = 06 day = 01 svn rev = 38247 language = R version.string = Version 2.3.1 (2006-06-01)

[Rd] Link error with glibc-2.4 on linux/PPC (PR#8967)

2006-06-12 Thread lu_zero
Full_Name: Luca Barbato Version: 2.3.1 OS: Gentoo Linux/PPC Submission from: (NULL) (151.44.163.144) system informations Portage 2.1 (default-linux/ppc/ppc32/2006.0/G4, gcc-4.1.1, glibc-2.4-r3, 2.6.17-rc5 ppc) = System uname: 2.6.17

[Rd] about integration of a library into package creation

2006-06-12 Thread Nicolas Turenne
hello, i try to create a package , and i call a library in the namespace file such as : useDynLib(quadprog) after checking my directory with the command "rcmd check" (i am on WindowsXP) i get an error: package / namespace load failed the path of the library is: D:\R\library\quadprog the pat

Re: [Rd] about integration of a library into package creation

2006-06-12 Thread Duncan Murdoch
On 6/12/2006 11:02 AM, Nicolas Turenne wrote: > hello, > > i try to create a package , and i call a library in the namespace file > such as : useDynLib(quadprog) > > after checking my directory with the command "rcmd check" (i am on > WindowsXP) > i get an error: package / namespace load failed

Re: [Rd] Making a windows packages with zip

2006-06-12 Thread Uwe Ligges
hadley wickham wrote: >> >> Either the latter or ask the Windows users to install the source package. >> > > Installing a source package doesn't seem to help: > >> install.packages("classifly", repos="http://ggobi.org/r/";, type="source") > Warning message: > installation of package 'classifly' h

Re: [Rd] Ruuid had non-zero exit status (PR#8965)

2006-06-12 Thread Thomas Lumley
Ruuid is a Bioconductor package; please report bugs to Bioconductor as they ask. -thomas On Mon, 12 Jun 2006, [EMAIL PROTECTED] wrote: >> source("http://www.bioconductor.org/biocLite.R";) >> biocLite(c("Ruuid")) > Running getBioC version 0.1.6 with R version 2.3.1 > Running biocinstall

Re: [Rd] about integration of a library into package creation

2006-06-12 Thread Nicolas Turenne
> > >You didn't show the results of installing your package. Did that work? > >Generally we advise to do a successful install before you try to run checks. > >Duncan Murdoch D:\RBuild\svcR> rcmd build D://RBuild//svcR --force --docs='all' --binary hence i obtain the file svcR_1.0.zip and

[Rd] do.call and hist

2006-06-12 Thread Florian Hahne
Hi everyone, here is something I noticed when playing around with do.call: do.call(hist, list(x=1:10)) uses for the main title and also the axis labels "c(1,2,3,4,5,6,7,8,9,10)" So do.call(hist, list(x=1:1)) nicely fills up your screen with numbers. Is there a way to get the deparsing from the

Re: [Rd] Link error with glibc-2.4 on linux/PPC (PR#8967)

2006-06-12 Thread ripley
Does this system need -fPIC? R cannot be expected to know the settings needed in config.site for all possible systems, and as you will see from the notes in configure.ac, ppc32 does not appear to need -fPIC according to the gcc documentation. Indeed, the manual INSTALL asked you to read says:

Re: [Rd] about integration of a library into package creation

2006-06-12 Thread Prof Brian Ripley
On Mon, 12 Jun 2006, Duncan Murdoch wrote: > On 6/12/2006 11:02 AM, Nicolas Turenne wrote: >> hello, >> >> i try to create a package , and i call a library in the namespace file >> such as : useDynLib(quadprog) >> >> after checking my directory with the command "rcmd check" (i am on >> WindowsXP)

Re: [Rd] do.call and hist

2006-06-12 Thread Gabor Grothendieck
Try x <- 1:10 do.call(hist, list(quote(x))) or do.call(hist, list(x = 1:10, xlab = "x")) On 6/12/06, Florian Hahne <[EMAIL PROTECTED]> wrote: > Hi everyone, > here is something I noticed when playing around with do.call: > do.call(hist, list(x=1:10)) > uses for the main title and also the axis

Re: [Rd] do.call and hist

2006-06-12 Thread Florian Hahne
Thanks, that did the trick... Gabor Grothendieck wrote: > Try > > x <- 1:10 > do.call(hist, list(quote(x))) > > or > > do.call(hist, list(x = 1:10, xlab = "x")) > > > On 6/12/06, Florian Hahne <[EMAIL PROTECTED]> wrote: >> Hi everyone, >> here is something I noticed when playing around with do.cal

Re: [Rd] about integration of a library into package creation

2006-06-12 Thread Nicolas Turenne
in that sense, it is useless to load the library from R source code making my package which is supposed to include it and load it so if i understand the R philosophy it is not possible to load dll from outside ; the user has to load my package and manually has to load the necessary libraries e

Re: [Rd] about integration of a library into package creation

2006-06-12 Thread Duncan Murdoch
On 6/12/2006 11:48 AM, Nicolas Turenne wrote: > > > > > >You didn't show the results of installing your package. Did that work? > > > >Generally we advise to do a successful install before you try to run > checks. > > > >Duncan Murdoch > > D:\RBuild\svcR> rcmd build D://RBuild//svcR --for

Re: [Rd] Making a windows packages with zip

2006-06-12 Thread Duncan Murdoch
On 6/12/2006 11:25 AM, Uwe Ligges wrote: > hadley wickham wrote: >>> >>> Either the latter or ask the Windows users to install the source package. >>> >> >> Installing a source package doesn't seem to help: >> >>> install.packages("classifly", repos="http://ggobi.org/r/";, type="source") >> Warni

Re: [Rd] about integration of a library into package creation

2006-06-12 Thread Duncan Murdoch
On 6/12/2006 12:25 PM, Nicolas Turenne wrote: > in that sense, it is useless to load the library from R source code > making my package > which is supposed to include it and load it > > so if i understand the R philosophy it is not possible to load dll from > outside ; > the user has to load my

Re: [Rd] about integration of a library into package creation

2006-06-12 Thread Nicolas Turenne
your answer is correct after checking some doc but examples are rare when i write in the description file Depends: R (>= 2.3), quadprog, ade4, spdep and in the namespcae file useDynLib(quadprog) useDynLib(spdep) useDynLib(ade4) importFrom("dist.dudi", "ade4") importFrom("solve.QP", "quadprog")

Re: [Rd] about integration of a library into package creation

2006-06-12 Thread Uwe Ligges
Nicolas Turenne wrote: > your answer is correct after checking some doc > but examples are rare > > when i write in the description file > Depends: R (>= 2.3), quadprog, ade4, spdep > > and in the namespcae file > > useDynLib(quadprog) > useDynLib(spdep) > useDynLib(ade4) > importFrom("dist.dud

Re: [Rd] about integration of a library into package creation

2006-06-12 Thread Martin Maechler
> "UweL" == Uwe Ligges <[EMAIL PROTECTED]> > on Mon, 12 Jun 2006 19:48:04 +0200 writes: UweL> Nicolas Turenne wrote: >> your answer is correct after checking some doc >> but examples are rare >> >> when i write in the description file >> Depends: R (>= 2.3), qu

[Rd] documentation for "Startup" should be clearer about system Rprofile (PR#8969)

2006-06-12 Thread htang
Full_Name: Hsiu-Khuern Tang Version: 2.3.0 OS: Debian GNU/Linux Submission from: (NULL) (15.243.169.73) On reading ?Startup, I cannot find anything that says that R_HOME/library/base/R/Rprofile is always run. The "Note" section does say that R_HOME/etc/Renviron is distinct from the site-wide Ren

[Rd] normalizePath() warning

2006-06-12 Thread Roger D. Peng
I've been getting the following warning after running 'install.packages()' recently: Warning message: insufficient OS support on this platform in: normalizePath(path) Does anyone know what this means? And does anyone know how I can get rid of the warning? I've just installed R on a fresh FC5

[Rd] segfault with layout() after closing X11() device (PR#8970)

2006-06-12 Thread dmaszle
Full_Name: Don Maszle Version: 2.3.0 OS: Solaris 9 - 64 bit compile Submission from: (NULL) (206.86.87.3) After closing an X11() window by either clicking on the close button or by calling dev.off(), R 2.3.0 segfaults as shown below. Calling layout() before any X11() device is opened just opens

[Rd] Building R package: make pdf & _masked_by_GlobalEnv

2006-06-12 Thread Dan Rabosky
Hi I am assembling an R package (under Windows XP, R v.2.3) and have a very basic question. Running R CMD build does not generate a pdf. R CMD check generates a .dvi, but I cannot figure out how to automatically create the pdf. I thought from reading the "writing r extensions' manual th

Re: [Rd] normalizePath() warning

2006-06-12 Thread Duncan Murdoch
On 6/12/2006 4:53 PM, Roger D. Peng wrote: > I've been getting the following warning after running 'install.packages()' > recently: > > Warning message: > insufficient OS support on this platform in: normalizePath(path) > > Does anyone know what this means? And does anyone know how I can get ri

Re: [Rd] Building R package: make pdf & _masked_by_GlobalEnv

2006-06-12 Thread Duncan Murdoch
On 6/12/2006 9:47 PM, Dan Rabosky wrote: > Hi > > I am assembling an R package (under Windows XP, R v.2.3) and have a very > basic question. Running R CMD build does not generate a pdf. R CMD check > generates a .dvi, but I cannot figure out how to automatically create the > pdf. I thoug

Re: [Rd] Building R package: make pdf & _masked_by_GlobalEnv

2006-06-12 Thread Dan Rabosky
>> >>I am assembling an R package (under Windows XP, R v.2.3) and have a very >>basic question. Running R CMD build does not generate a pdf. R CMD >>check generates a .dvi, but I cannot figure out how to automatically >>create the pdf. I thought from reading the "writing r extensions' manual

[Rd] R-2.3.1 does not install on FreeBSD 4.11-RELEASE (PR#8971)

2006-06-12 Thread kenji . rikitake
Full_Name: Kenji Rikitake Version: 2.3.1 OS: FreeBSD 4.11-RELEASE-p18 Submission from: (NULL) (220.157.163.221) After doing ./configure --disable-mbcs (as default in FreeBSD 4.x) and make the compilation stops at src/main/printutils.c as: printutils.c: In function `Rvprintf': printutils.c:582: `v

Re: [Rd] R-2.3.1 does not install on FreeBSD 4.11-RELEASE (PR#8971)

2006-06-12 Thread Prof Brian Ripley
The first point is already changed in R-patched: please try it and confirm. The NEWS file says: o There were problems in src/main/printutils.c on platforms that did not have va_copy. What architecture and compiler is this (and is FreeBSD 4.11-RELEASE not rather old)? va_copy i

Re: [Rd] Building R package: make pdf & _masked_by_GlobalEnv

2006-06-12 Thread Prof Brian Ripley
On Mon, 12 Jun 2006, Dan Rabosky wrote: > >>> >>> I am assembling an R package (under Windows XP, R v.2.3) and have a very >>> basic question. Running R CMD build does not generate a pdf. R CMD >>> check generates a .dvi, but I cannot figure out how to automatically >>> create the pdf. I though

Re: [Rd] R-2.3.1 does not install on FreeBSD 4.11-RELEASE (PR#8971)

2006-06-12 Thread Kenji Rikitake
Prof. Ripley: In the message <[EMAIL PROTECTED]> dated Tue, Jun 13, 2006 at 06:53:20AM +0100, Prof Brian Ripley <[EMAIL PROTECTED]> writes: > The first point is already changed in R-patched: please try it and > confirm. [...] I'm compiling the kit R-patched_2006-06-12.tar.gz right now. The bugg

Re: [Rd] normalizePath() warning

2006-06-12 Thread Prof Brian Ripley
On Mon, 12 Jun 2006, Duncan Murdoch wrote: > On 6/12/2006 4:53 PM, Roger D. Peng wrote: >> I've been getting the following warning after running 'install.packages()' >> recently: >> >> Warning message: >> insufficient OS support on this platform in: normalizePath(path) >> >> Does anyone know what

Re: [Rd] R-2.3.1 does not install on FreeBSD 4.11-RELEASE (PR#8971)

2006-06-12 Thread Prof Brian Ripley
On Tue, 13 Jun 2006, Kenji Rikitake wrote: > Prof. Ripley: > > In the message <[EMAIL PROTECTED]> > dated Tue, Jun 13, 2006 at 06:53:20AM +0100, > Prof Brian Ripley <[EMAIL PROTECTED]> writes: >> The first point is already changed in R-patched: please try it and >> confirm. [...] > > I'm compiling

Re: [Rd] R-2.3.1 does not install on FreeBSD 4.11-RELEASE (PR#8971)

2006-06-12 Thread Kenji Rikitake
In the message <[EMAIL PROTECTED]> dated Tue, Jun 13, 2006 at 07:25:01AM +0100, Prof Brian Ripley <[EMAIL PROTECTED]> writes: > __va_copy is supposed to exist on that compiler, and the R code maps > __va_copy to va_copy when the first exists and the second does not. Unfortunately configure did no