Re: [Rd] using openbabel plugins in R

2013-03-27 Thread Kevin Horan
Thanks for all the suggestions. I have discovered that the problem is fixed in openbabel 2.3.x. I had actually been testing with open babel 2.3.2 (as well as 2.2.3), but I was running it from the build directory since I didn't want to install it on the system as I was only testing with it. Be

Re: [Rd] using openbabel plugins in R

2013-03-27 Thread Simon Urbanek
On Mar 27, 2013, at 1:02 PM, Kevin Horan wrote: > After some more testing I have found that it actually does work if I compile > without the plugin library but load it with dyn.load. I'm not sure why this > wasn't working before. It only works though if the plugin library is loaded > before li

Re: [Rd] using openbabel plugins in R

2013-03-27 Thread Dirk Eddelbuettel
On 27 March 2013 at 10:02, Kevin Horan wrote: | After some more testing I have found that it actually does work if I | compile without the plugin library but load it with dyn.load. I'm not | sure why this wasn't working before. It only works though if the plugin | library is loaded before libob

Re: [Rd] using openbabel plugins in R

2013-03-27 Thread Kevin Horan
After some more testing I have found that it actually does work if I compile without the plugin library but load it with dyn.load. I'm not sure why this wasn't working before. It only works though if the plugin library is loaded before libobtest2.so (the open babel main lib basically). So,

Re: [Rd] using openbabel plugins in R

2013-03-26 Thread Dirk Eddelbuettel
On 25 March 2013 at 12:50, Kevin Horan wrote: | I posted this in openbabel-devel but didn't get much help, so hopefully | someone here can help. I don't think its too openbabel specific. | | I would like to make use of open babel from within the R language. | Initially I just need to do some for

[Rd] using openbabel plugins in R

2013-03-26 Thread Kevin Horan
I posted this in openbabel-devel but didn't get much help, so hopefully someone here can help. I don't think its too openbabel specific. I would like to make use of open babel from within the R language. Initially I just need to do some format conversions, but may expand the usage to other parts