I haven't been able to reproduce the empty lines issue on my Mac or
Linux laptop, but I have yet to try that container.
The warning is because of a SEEK_SET to -1, which apparently is
unsupported by zlib. Maybe the zlib version in that container is
getting confused. I'm not sure why readLines() wa
You bet - it's available on github at
https://github.com/UW-GAC/wgsaparsr/blob/master/tests/testthat/1k_annotation.gz
-Ben
On Thu, May 10, 2018 at 4:17 PM, Michael Lawrence wrote:
> Would it be possible to get that file or a representative subset of it
> somewhere so that I can reproduce this?
Would it be possible to get that file or a representative subset of it
somewhere so that I can reproduce this?
Thanks,
Michael
On Thu, May 10, 2018 at 3:31 PM, Ben Heavner wrote:
> When I read a .gz file with readLines() in 3.4.3, it returns text (and a
> warning). In 3.5.0, it gives a warning,
When I read a .gz file with readLines() in 3.4.3, it returns text (and a
warning). In 3.5.0, it gives a warning, but no text. Is this expected
behavior or a bug?
3.4.3:
> source_file = "1k_annotation.gz"
> readfile_con <- gzfile(source_file, "r")
> readLines(readfile_con, n = 5)
[1] "#chr\tpos\tre
