Re: [Rd] rJava fails compilation on R-2.9.1 but not R-2.7.1 on Debian Lenny

2009-07-15 Thread Mark Kimpel
Well, guess what, rJava also compiles on R-devel (soon to be R-2.10.0). I'll stick with that for my purposes. Thanks for your suggestion. Mark Mark W. Kimpel MD ** Neuroinformatics ** Dept. of Psychiatry Indiana University School of Medi

Re: [Rd] rJava fails compilation on R-2.9.1 but not R-2.7.1 on Debian Lenny

2009-07-15 Thread Dirk Eddelbuettel
Mark, Again, sudo apt-get install r-cran-rjava does what you want. We do provide these binaries for a reason. Namely, that it can be hard to tame the system requirements. So why don't you just install the binaries we provide? Dirk -- Three out of two people have difficulties with fra

Re: [Rd] rJava fails compilation on R-2.9.1 but not R-2.7.1 on Debian Lenny

2009-07-15 Thread Joshua Ulrich
Hi Mark, The first thing that jumps out to me is that 2.7.1 compiles JRI, while 2.9.1 does not (for some reason, autodetect decides not to compile). HTH, Josh -- http://www.fosstrading.com On Wed, Jul 15, 2009 at 1:46 PM, Mark Kimpel wrote: > I have been futzing around for days tying to get rJ

Re: [Rd] rJava fails compilation on R-2.9.1 but not R-2.7.1 on Debian Lenny

2009-07-15 Thread Mark Kimpel
Sorry, My sentence that starts "The file" was truncated and should say "The file "jni.h" is present and on my PATH, see output below" mkimpel-debian-xps /usr/lib/jvm/java-6-sun/include: ls classfile_constants.h jawt.h jdwpTransport.h jni.h jvmti.h linux mkimpel-debian-xps /usr/lib/jvm/java-6-

[Rd] rJava fails compilation on R-2.9.1 but not R-2.7.1 on Debian Lenny

2009-07-15 Thread Mark Kimpel
I have been futzing around for days tying to get rJava to install on my freshly build Debian Lenny installation. I have R-2.9.1 installed from source in my R_HOME directory and R-2.7.1 installed via apt-get install r-recommended. I was tried many different things, but by accident started up R-2.7.1