Re: [Rd] problem building R packages on RHEL 4 Linux with Intel compilers

2008-05-30 Thread Bjørn-Helge Mevik
"Mark Kimpel" <[EMAIL PROTECTED]> writes: > I would like to build R and packages with the Intel 10.1 compilers in RHEL4. We are successfully building R and packages with the Intel 10.1 compilers on RHEL4 (except a few packages, which will not compile with 10.1, but with 9.1). We also use the Int

Re: [Rd] problem building R packages on RHEL 4 Linux with Intel compilers

2008-05-30 Thread Prof Brian Ripley
On Fri, 30 May 2008, Martin Maechler wrote: [Adding Mark Kimpel back to the recipients] "SU" == Simon Urbanek <[EMAIL PROTECTED]> on Thu, 29 May 2008 20:06:21 -0400 writes: SU> On May 29, 2008, at 6:11 PM, Mark Kimpel wrote: >> Esmail and Simon, I would direct you to the very first

Re: [Rd] problem building R packages on RHEL 4 Linux with Intel compilers

2008-05-30 Thread Martin Maechler
> "SU" == Simon Urbanek <[EMAIL PROTECTED]> > on Thu, 29 May 2008 20:06:21 -0400 writes: SU> On May 29, 2008, at 6:11 PM, Mark Kimpel wrote: >> Esmail and Simon, I would direct you to the very first sentence of my >> original post, "I would like to build R and packages wit

Re: [Rd] problem building R packages on RHEL 4 Linux with Intel compilers

2008-05-29 Thread Simon Urbanek
On May 29, 2008, at 6:11 PM, Mark Kimpel wrote: Esmail and Simon, I would direct you to the very first sentence of my original post, "I would like to build R and packages with the Intel 10.1 compilers in RHEL4." I DO NOT want to build with gcc, that is the very point of this thread. Does an

Re: [Rd] problem building R packages on RHEL 4 Linux with Intel compilers

2008-05-29 Thread Mark Kimpel
Esmail and Simon, I would direct you to the very first sentence of my original post, "I would like to build R and packages with the Intel 10.1 compilers in RHEL4." I DO NOT want to build with gcc, that is the very point of this thread. Does anyone have an answer to my original question? I need to k

Re: [Rd] problem building R packages on RHEL 4 Linux with Intel compilers

2008-05-29 Thread Simon Urbanek
On May 29, 2008, at 5:45 PM, Mark Kimpel wrote: Simon, I scanned the config.log, which is too voluminous to insert below, but it seems that gcc is still being looked for as the compiler. See the lines from config.log below. Mark Thread model: posix gcc version 3.4.6 20060404 (Red Hat 3.4.6

Re: [Rd] problem building R packages on RHEL 4 Linux with Intel compilers

2008-05-29 Thread Mark Kimpel
Simon, I scanned the config.log, which is too voluminous to insert below, but it seems that gcc is still being looked for as the compiler. See the lines from config.log below. Mark Thread model: posix gcc version 3.4.6 20060404 (Red Hat 3.4.6-9) configure:4824: $? = 0 configure:4831: gcc -V >&5 gc

Re: [Rd] problem building R packages on RHEL 4 Linux with Intel compilers

2008-05-29 Thread Simon Urbanek
On May 29, 2008, at 5:01 PM, Mark Kimpel wrote: I am installing within my home folder, see the ./configure options. I've never had a permission problem before and, like I said, if I don't put all the Intel-specific flags in the ./configure, everything works fine. This has nothing to do

Re: [Rd] problem building R packages on RHEL 4 Linux with Intel compilers

2008-05-29 Thread Mark Kimpel
I am installing within my home folder, see the ./configure options. I've never had a permission problem before and, like I said, if I don't put all the Intel-specific flags in the ./configure, everything works fine. On Thu, May 29, 2008 at 4:41 PM, Esmail Bonakdarian <[EMAIL PROTECTED]> wrote: >

Re: [Rd] problem building R packages on RHEL 4 Linux with Intel compilers

2008-05-29 Thread Esmail Bonakdarian
Mark Kimpel wrote: checking for gcc... gcc checking for C compiler default output file name... configure: error: C compiler cannot create executables See `config.log' for more details. Are you running this as root? Or do you have the right privileges for the install? The "cannot create execut

[Rd] problem building R packages on RHEL 4 Linux with Intel compilers

2008-05-29 Thread Mark Kimpel
I would like to build R and packages with the Intel 10.1 compilers in RHEL4. Using the flags below, I can successfully build R using a vanilla ./configure, but when I install new packages they build with gcc. My sysadmin suggested adding the flags to ./configure as illustrated below, but then the R