Re: [Rd] drawing the graph with many nodes

2012-03-27 Thread Tim Triche, Jr.
there's also Rgraphviz, although with 30,000+ edges it may not survive *this* graph :-) On Tue, Mar 27, 2012 at 4:11 AM, Whit Armstrong wrote: > if you don't mind going outside of R to create it, then check out > Graphviz: http://www.graphviz.org/Gallery.php > > you may have to reformat your dat

Re: [Rd] drawing the graph with many nodes

2012-03-27 Thread oliver
Hi, your code does not run in a fresh R environment: Error in getClass(Class, where = topenv(parent.frame())) : "graphAM" is not a defined class If you don't provide working code, it's (too) much effort to help. There are some graph packages arround. Which you need depends on what you wa

Re: [Rd] drawing the graph with many nodes

2012-03-27 Thread Whit Armstrong
if you don't mind going outside of R to create it, then check out Graphviz: http://www.graphviz.org/Gallery.php you may have to reformat your data a little, but this tool is great for drawing graphs. -Whit On Tue, Mar 27, 2012 at 5:14 AM, MSousa wrote: > Good morning, > > > I'm trying to draw

[Rd] drawing the graph with many nodes

2012-03-27 Thread MSousa
Good morning, I'm trying to draw a graph, and I'm using the following code. test.matrix<-read.table("~/Desktop/Results/testgephi.csv", header = T, sep=",") colnames(test.matrix) <- gsub("X", "", colnames(test.matrix)) #drop first column drops <- c("") test.matrix<-test.matrix[,!(names(test.mat