Dirk,
Did R CMD ldd $R_HOME/library/Rmpi/libs/Rmpi.so as suggested and
things looked okay. Not really wanting to mess with the debugger I
decided to use your prepackaged version. I completely uninstalled all
openmpi packages on my system using Synaptic and deleted my compiled
from source Rmpi from
On 12 June 2008 at 18:38, Mark Kimpel wrote:
| Dirk,
|
| Configure concluded without errors. I am not running this on the HPC
| cluster with icc, rather a separate local box used for testing and
| learning. Its just an 64-bit Ubuntu 8.04 install on a 4-core machine.
| LAM is not installed (I chec
Oleg Sklyar wrote:
simply cd to $R_HOME/library/Rmpi/libs and do on the command line
ldd -r Rmpi.so
I think you'll want to
R CMD ldd $R_HOME/library/Rmpi/libs/Rmpi.so
which picks up the R configuration environment, e.g., compare BLAS below:
[EMAIL PROTECTED]:~/> R CMD ldd $R_HOME/library/st
simply cd to $R_HOME/library/Rmpi/libs and do on the command line
ldd -r Rmpi.so
this will display you a list of dependencies of Rmpi.so and you can see
if you find there the libraries that you expected to link against, or
there will be some libraries from unexpected paths or missing ones
Ma
Dirk,
Configure concluded without errors. I am not running this on the HPC
cluster with icc, rather a separate local box used for testing and
learning. Its just an 64-bit Ubuntu 8.04 install on a 4-core machine.
LAM is not installed (I checked to make sure).
So, that leaves me with you last two o
On 11 June 2008 at 00:46, Mark Kimpel wrote:
| I just installed Rmpi on my 64-bit Ubuntu Hardy Heron OS and using the
| following without errors:
| "R CMD INSTALL Rmpi_0.5-5.tar.gz
--configure-args=--with-mpi=/usr/lib64/openmpi"
And it concluded without warnings or errors? Configure found all th
ED] On Behalf Of Mark Kimpel
> Sent: 11 June 2008 05:47
> To: [EMAIL PROTECTED]; Dirk Eddelbuettel
> Subject: [Rd] Rmpi segfault after install on Ubuntu Hardy Heron
>
> I just installed Rmpi on my 64-bit Ubuntu Hardy Heron OS and
> using the following without errors:
>
On 11 June 2008 at 10:38, Sklyar, Oleg \(MI London\) wrote:
| Does Rmpi work with OpenMPI at all? It calls lamboot on load from LAM
Yes.
| MPI. I would think that mpi_initialize calls a shared library function
| from LAM MPI which simply does not exist in OpenMPI or which does
| something diffe
On Behalf Of Mark Kimpel
> Sent: 11 June 2008 05:47
> To: [EMAIL PROTECTED]; Dirk Eddelbuettel
> Subject: [Rd] Rmpi segfault after install on Ubuntu Hardy Heron
>
> I just installed Rmpi on my 64-bit Ubuntu Hardy Heron OS and
> using the following without errors:
> &q
I just installed Rmpi on my 64-bit Ubuntu Hardy Heron OS and using the
following without errors:
"R CMD INSTALL Rmpi_0.5-5.tar.gz --configure-args=--with-mpi=/usr/lib64/openmpi"
Immediately at library(Rmpi) I get the segfault displayed in my
complete output below. My first thought is that perhaps
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