On Wed, 03-Mar-2010 at 07:53PM +1300, Patrick Connolly wrote:
|> I got Rmpi to compile with little difficulty, but had a tricky time
|> setting the LD_LIBRARY_PATH to use the OpenMPI libs. I now get a
|> different error when I try to load Rmpi
|>
|>
|> > require(Rmpi)
|> Loadi
On Wed, 03-Mar-2010 at 01:57PM -0600, Dirk Eddelbuettel wrote:
[...]
|> You could try to suppress the probe for IB which we did (in the older 1.2.*
|> series of OpenMPI) via
|>
|># Disable the use of InfiniBand
|># btl = ^openib
|>btl = ^openib
|>
|> in /etc/openmpi/openmpi-mca-p
On Mar 4, 2010, at 1:24 AM, Patrick Connolly wrote:
> On Wed, 03-Mar-2010 at 01:46PM -0600, Marc Schwartz wrote:
>
>
> |> Patrick, just as an FYI, I did not see which variant of CentOS you
> |> are using, but:
>
> Apologies. I didn't mention it's 5.4
No problem.
>
> |> CentOS 4, which is b
On Wed, 03-Mar-2010 at 01:46PM -0600, Marc Schwartz wrote:
|> Patrick, just as an FYI, I did not see which variant of CentOS you
|> are using, but:
Apologies. I didn't mention it's 5.4
|> CentOS 4, which is based upon RHEL 4, is in turn based upon Fedora
|> Core 3 (2004).
|> CentOS 5, which i
On 3 March 2010 at 19:24, Prof Brian Ripley wrote:
| On Thu, 4 Mar 2010, Patrick Connolly wrote:
|
| > On Wed, 03-Mar-2010 at 08:42AM +, Prof Brian Ripley wrote:
| >
| >> There are many different versions of OpenMPI about. It looks like
| >> you have one that is set up for specialized hardwa
On Mar 3, 2010, at 1:24 PM, Prof Brian Ripley wrote:
> On Thu, 4 Mar 2010, Patrick Connolly wrote:
>
>> On Wed, 03-Mar-2010 at 08:42AM +, Prof Brian Ripley wrote:
>>
>>> There are many different versions of OpenMPI about. It looks like
>>> you have one that is set up for specialized hardwar
On Thu, 4 Mar 2010, Patrick Connolly wrote:
On Wed, 03-Mar-2010 at 08:42AM +, Prof Brian Ripley wrote:
There are many different versions of OpenMPI about. It looks like
you have one that is set up for specialized hardware. Either this
is the wrong version or a configuration error, and yo
On Wed, 03-Mar-2010 at 08:42AM +, Prof Brian Ripley wrote:
> There are many different versions of OpenMPI about. It looks like
> you have one that is set up for specialized hardware. Either this
> is the wrong version or a configuration error, and you will need to
> talk to your 'local Syste
There are many different versions of OpenMPI about. It looks like you
have one that is set up for specialized hardware. Either this is the
wrong version or a configuration error, and you will need to talk to
your 'local System Administrator'.
Incidentally, you should not have to set LD_LIBRA
After setting the LD_LIBRARY_PATH to use the OpenMPI libs, I now get a
different error when I try to load Rmpi
> require(Rmpi)
>
Loading required package: Rmpi
librdmacm: couldn't read ABI version.
librdm
I got Rmpi to compile with little difficulty, but had a tricky time
setting the LD_LIBRARY_PATH to use the OpenMPI libs. I now get a
different error when I try to load Rmpi
> require(Rmpi)
Loading required package: Rmpi
librdmacm: couldn't read ABI version.
librdmacm: assuming:
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