Hi Kamal,
Sounds like a Bioconductor question. Would be better to ask on the
Bioc-devel mailing list. See you there.
Cheers,
H.
On 06/26/2013 07:37 AM, Kamal wrote:
Few more details:
clRes object is essentially a list of SummarizedExperiment class object (of
GenomicRanges package). Each obje
Hi Kamal,
I suspect this to be because you did not load the package on each core so the
S4 definitions are not available there. The solution would be to specifically
load the library at each core prior to calling clusterApplyLB. (I vaguely
remember once having a similar problem where something
Few more details:
clRes object is essentially a list of SummarizedExperiment class object (of
GenomicRanges package). Each object is of single chromosome since it is
generated by parallelization. I am trying to combine all these object into
a single SummarizedExperiment Object. Since we can combin
Prof Brian,
Thanks for the reply. My mistake its "clRes" in place of "result"
> chrcomb <- sapply(clRes, function(x) rbind(x))
Error in rbind(x) : no method for coercing this S4 class to a vector
I think what you mentioned about the package forgetting to import an S4
generic for rbind seems the
On 26/06/2013 10:56, Kamal wrote:
Hi,
I am currently building an R package and I am facing a peculiar problem
where some of the functions does not work within the package. However, if I
source the script the function works.
Nothing here is reproducible, so we need to guess. In particular, you
Hi,
I am currently building an R package and I am facing a peculiar problem
where some of the functions does not work within the package. However, if I
source the script the function works.
For example, in a method for parallelization of analysis on each chromosome
simultaneously I am receiving er
