On Mon, Apr 18, 2011 at 2:00 PM, Dario Strbenac
wrote:
> It turns out what I needed was IRanges in the Imports: field. I assumed that
> require(GenomicRanges) at the top of my function would, as a result of
> loading GenomicRanges, implicitly already know about all the IRanges classes,
> becaus
>Date: Fri, 15 Apr 2011 20:34:54 -0700
>From: Martin Morgan
>Subject: Re: [Rd] DESCRIPTION file and Rd examples
>To: Simon Urbanek
>Cc: d.strbe...@garvan.org.au, r-devel@r-project.org
>
>On 04/15/2011 11:18 AM, Simon Urbanek wrote:
>>
>> On Apr 14, 2011,
On 04/15/2011 11:18 AM, Simon Urbanek wrote:
On Apr 14, 2011, at 11:00 PM, Dario Strbenac wrote:
I have a confusing error from R CMD check that I don't get when running the
example manually by hand.
In the \examples section of an Rd file, I create a GRanges object, then I call
a function wi
On Apr 14, 2011, at 11:00 PM, Dario Strbenac wrote:
> I have a confusing error from R CMD check that I don't get when running the
> example manually by hand.
>
> In the \examples section of an Rd file, I create a GRanges object, then I
> call a function with the GRanges object, whose first 2 l
It would probably be helpful if you could point us to the source version
of your package so that we can take a look what happens.
Which version of R, and the other required packages are you talking about?
Uwe Ligges
On 15.04.2011 05:00, Dario Strbenac wrote:
I have a confusing error from R
I have a confusing error from R CMD check that I don't get when running the
example manually by hand.
In the \examples section of an Rd file, I create a GRanges object, then I call
a function with the GRanges object, whose first 2 lines are
require(GenomicRanges)
annoDF <- as.data.frame
