Re: [Rd] Compilation problems

2014-08-15 Thread André Z . D . A .
It is not a virtual machine. But every process has it's memory limited. And Java will insanely (try to) reserve 1/4 of memory for its heap on every run, by default. Ugly language, that would be at least 3GB on this server. So the fix is -Xms and -Xmx passed using _JAVA_OPTIONS variable. Now it h

Re: [Rd] Compilation problems

2014-08-13 Thread Jeroen Ooms
On Sat, Aug 9, 2014 at 10:56 AM, André Z. D. A. wrote: > Could not create the Java virtual machine. > Error occurred during initialization of VM > Could not reserve enough space for object heap I have seen this error before when running java inside a vm container (openvz, lxc) where the kernel do

Re: [Rd] Compilation problems

2014-08-13 Thread Brian Lee Yung Rowe
I would add it would be useful to know what system you are on and how much overall memory the machine has (not to mention how many other users are on the box). If you are on a linux variant, you can see installed memory by running: cat /proc/meminfo. You might also want to look at top to see how

Re: [Rd] Compilation problems

2014-08-13 Thread peter dalgaard
Well, I didn't go there because I don't have a clue What I usually try in such circumstances is to Google the error message and see if any ideas crop up. Looks like it is common to several applications that use Java, so not likely an R issue per se. I'd look into - how to provoke the erro

Re: [Rd] Compilation problems

2014-08-12 Thread peter dalgaard
On 11 Aug 2014, at 16:49 , peter dalgaard wrote: > > On 11 Aug 2014, at 15:46 , André Z. D. A. wrote: > >> No, Peter, I have the "(2014-07-10, Sock it to Me) R-3.1.1.tar.gz" source. >> Thanks for pointing it. So (I hope) it should be ok. Right? > > Not unlikely. (I goofed and thought that i

Re: [Rd] Compilation problems

2014-08-11 Thread peter dalgaard
On 11 Aug 2014, at 15:46 , André Z. D. A. wrote: > No, Peter, I have the "(2014-07-10, Sock it to Me) R-3.1.1.tar.gz" source. > Thanks for pointing it. So (I hope) it should be ok. Right? Not unlikely. (I goofed and thought that it only affected the development version.) Check kpsewhich in

Re: [Rd] Compilation problems

2014-08-11 Thread André Z . D . A .
No, Peter, I have the "(2014-07-10, Sock it to Me) R-3.1.1.tar.gz" source. Thanks for pointing it. So (I hope) it should be ok. Right? Peter Dalgaard, Professor wrote: > If you are playing with the R-devel branch (or rather, trunk), then just hold > your horses for a little while. There

Re: [Rd] Compilation problems

2014-08-11 Thread peter dalgaard
On 09 Aug 2014, at 16:50 , André Z. D. A. wrote: >> Worst case is that you'll have to install TeX in your local user directory. > > I'll try to find it again. The search I tried didn't look as easy, very few > results, none helpful. And if I could install *just the fonts* on my local > dir, i

Re: [Rd] Compilation problems

2014-08-09 Thread André Z . D . A .
> Worst case is that you'll have to install TeX in your local user directory. I'll try to find it again. The search I tried didn't look as easy, very few results, none helpful. And if I could install *just the fonts* on my local dir, instead of the full TeX, it would be perfect. But I don't kno

[Rd] Compilation problems

2014-08-09 Thread André Z . D . A .
Hello, I'm trying to compile and install R for my user in a machine without admin privileges. I have done this before, so this is fine. But I have 2 problems with R compilation right now. After ./configure --prefix=/home/me/dir/ I get this: R is now configure