Re: [Rd] Build R with MKL and ICC

2015-10-11 Thread arnaud gaboury
On Wed, Sep 30, 2015 at 12:18 PM, arnaud gaboury wrote: > On Tue, Sep 29, 2015 at 8:11 PM, Nathan Kurz wrote: >> Hi Arnaud -- >> >> I'm glad it's working for you. I'm not sure I understand your final >> answer. Are you saying that the version I posted worked for you as >> given, or that you had

Re: [Rd] Build R with MKL and ICC

2015-09-30 Thread arnaud gaboury
On Tue, Sep 29, 2015 at 8:11 PM, Nathan Kurz wrote: > Hi Arnaud -- > > I'm glad it's working for you. I'm not sure I understand your final > answer. Are you saying that the version I posted worked for you as > given, or that you had to remove some of the other options? I say it works perfectly

Re: [Rd] Build R with MKL and ICC

2015-09-29 Thread Nathan Kurz
Hi Arnaud -- I'm glad it's working for you. I'm not sure I understand your final answer. Are you saying that the version I posted worked for you as given, or that you had to remove some of the other options? Perhaps you could post the full final recipe in a way that others can copy and paste if

Re: [Rd] Build R with MKL and ICC

2015-09-29 Thread arnaud gaboury
On Wed, Sep 9, 2015 at 11:26 PM, Nathan Kurz wrote: > > As a short and simple approach, I just compiled the current R release > on Ubuntu with ICC and MKL using just this: > > $ tar -xzf R-3.2.2.tar.gz > $ cd R-3.2.2 > $ CC=icc CXX=icpc AR=xiar LD=xild CFLAGS="-g -O3 -xHost" CXXFLAGS="-g > -O3 -xH

Re: [Rd] Build R with MKL and ICC

2015-09-09 Thread Nathan Kurz
As a short and simple approach, I just compiled the current R release on Ubuntu with ICC and MKL using just this: $ tar -xzf R-3.2.2.tar.gz $ cd R-3.2.2 $ CC=icc CXX=icpc AR=xiar LD=xild CFLAGS="-g -O3 -xHost" CXXFLAGS="-g -O3 -xHost" ./configure --with-blas="-lmkl_rt -lpthread" --with-lapack --en

Re: [Rd] Build R with MKL and ICC - make check fails

2015-09-08 Thread arnaud gaboury
On Tue, Sep 8, 2015 at 10:31 AM, arnaud gaboury wrote: > The whole build goes well and success. Now, when $ make check, it > fails because of the WARNING. > > --- > running code in 'eval-etc.R' ... OK > comparing 'eval-etc.Rout' to './eval-etc.Rout.save' ...WARNING:

[Rd] Build R with MKL and ICC - make check fails

2015-09-08 Thread arnaud gaboury
The whole build goes well and success. Now, when $ make check, it fails because of the WARNING. --- running code in 'eval-etc.R' ... OK comparing 'eval-etc.Rout' to './eval-etc.Rout.save' ...WARNING: ignoring environment value of R_HOME 1d0 < WARNING: ignoring environ

Re: [Rd] Build R with MKL and ICC

2015-09-07 Thread Martyn Plummer
On Sat, 2015-09-05 at 11:53 +0200, arnaud gaboury wrote: > On Fri, Sep 4, 2015 at 5:58 PM, Martyn Plummer wrote: > > On Wed, 2015-09-02 at 20:49 +0200, arnaud gaboury wrote: > >> On Wed, Sep 2, 2015 at 7:35 PM, arnaud gaboury > >> wrote: > >> > After a few days of reading and headache, I finally

Re: [Rd] Build R with MKL and ICC

2015-09-07 Thread Bjørn-Helge Mevik
arnaud gaboury writes: > Thank you for this configuration. Nothing about openmp? I believe -mkl=parallel makes sure that all relevant libraries and switches are used. But you might want to check with the manual. All I can say is that it works. -- Regards, Bjørn-Helge Mevik _

Re: [Rd] Build R with MKL and ICC

2015-09-05 Thread arnaud gaboury
On Fri, Sep 4, 2015 at 5:58 PM, Martyn Plummer wrote: > On Wed, 2015-09-02 at 20:49 +0200, arnaud gaboury wrote: >> On Wed, Sep 2, 2015 at 7:35 PM, arnaud gaboury >> wrote: >> > After a few days of reading and headache, I finally gave a try at >> > building R from source with Intel MKL and ICC.

Re: [Rd] Build R with MKL and ICC

2015-09-04 Thread Martyn Plummer
On Wed, 2015-09-02 at 20:49 +0200, arnaud gaboury wrote: > On Wed, Sep 2, 2015 at 7:35 PM, arnaud gaboury > wrote: > > After a few days of reading and headache, I finally gave a try at > > building R from source with Intel MKL and ICC. Documentation and posts > > on this topic are rather incomple

Re: [Rd] Build R with MKL and ICC

2015-09-04 Thread arnaud gaboury
On Fri, Sep 4, 2015, 9:24 AM Bjørn-Helge Mevik wrote: arnaud gaboury writes: > After a few days of reading and headache, I finally gave a try at > building R from source with Intel MKL and ICC. Documentation and posts > on this topic are rather incomplete, sometime fantasist et do not give > mu

Re: [Rd] Build R with MKL and ICC

2015-09-04 Thread Bjørn-Helge Mevik
arnaud gaboury writes: > After a few days of reading and headache, I finally gave a try at > building R from source with Intel MKL and ICC. Documentation and posts > on this topic are rather incomplete, sometime fantasist et do not give > much explanations about configure options. > As I am not s

Re: [Rd] Build R with MKL and ICC

2015-09-02 Thread arnaud gaboury
On Wed, Sep 2, 2015 at 7:35 PM, arnaud gaboury wrote: > After a few days of reading and headache, I finally gave a try at > building R from source with Intel MKL and ICC. Documentation and posts > on this topic are rather incomplete, sometime fantasist et do not give > much explanations about conf

[Rd] Build R with MKL and ICC

2015-09-02 Thread arnaud gaboury
After a few days of reading and headache, I finally gave a try at building R from source with Intel MKL and ICC. Documentation and posts on this topic are rather incomplete, sometime fantasist et do not give much explanations about configure options. As I am not sure if mine is correct, I would app