n the publication schedule? Are there still plans
for a June 2016 issue?
Thanks
Gordon
-
Professor Gordon K Smyth,
Head, Bioinformatics Division,
Walter and Eliza Hall Institute of Medical Research,
http://www.statsci.org/
Date: Thu, 13 Nov 2014 12:09:47 +0100
From: January Weiner
To: r-devel
Subject: [Rd] Changing style for the Sweave vignettes
As a user, I am always annoyed beyond measure that Sweave vignettes
precede the code by a command line prompt. It makes running examples
by simple copying of the commands
Thanks. Our package has LGPL (>= 2) licence, so we'll copy with header
and proper acknowledgements.
Gordon
On Mon, 9 Jul 2012, Prof Brian Ripley wrote:
On Mon, 9 Jul 2012, Gordon K Smyth wrote:
Dear all,
I'm writing to ask for advice as to best practice. A PhD student wor
ns?
Thanks a lot
Gordon
-
Professor Gordon K Smyth,
Bioinformatics Division,
Walter and Eliza Hall Institute of Medical Research,
1G Royal Parade, Parkville, Vic 3052, Australia.
Tel: (03) 9345 2326, Fax (03) 9347 0852,
htt
e possible to
have a dist = "mahalanobis" option please? I realise that this is quite an
ask - you could even point me in the right direction of where to start
editing code and getting it compiled on my own machine.
Tim Smyth
ref: T.S. Moore et al. Remote Sensing of Environment 113 (
On Thu, 17 Mar 2011, peter dalgaard wrote:
On Mar 16, 2011, at 23:29 , Gordon K Smyth wrote:
Hi Peter and others,
If it helps, I wrote a small function glm.scoretest() for the statmod
package on CRAN to compute score tests from glm fits. The score test
for adding a covariate, or any set
already know that.
Regards
Gordon
-
Professor Gordon K Smyth,
NHMRC Senior Research Fellow,
Bioinformatics Division,
Walter and Eliza Hall Institute of Medical Research,
1G Royal Parade, Parkville, Vic 3052, Australia.
sm...@wehi.edu.au
http
ill follow this up with the
Bioconductor people.
The one exception is the self-reference to limma:00Index. This marked as
a missing link, under Windows only, although it works fine.
Gordon
On Mon, 28 Sep 2009, Gordon K Smyth wrote:
Rcmd check under R 2.10.0dev for Windows seems to be issuin
everse would be nice, but
it's not possible with the current design, so that would be far off.
- Some general rationalization of the whole help system.
Duncan Murdoch
MISC:
I understand that \link[=-class]{} is part of
standard Rd conventions, but to the best of my knowledge
\link[=.class]{} i
Is there a capability that you would like for the package which could
be achieved only if the package was transitioned to S4? If so,
explain this to the author. If not, why ask them to change?
Gordon
>[Rd] S4 Classes
>Daniel Gerlanc dgerlanc at gmail.com
>Thu Aug 10 23:37:15 CEST 2006
>
>Hello
Reading the following delimited file with read.csv() or read.table()
file1:
X,Y
1,2
2,4
3,6
4,8
5,10,,
6,12
produces a data.frame with 7 rows instead of 6 because the two extra values on
line 6 of the file
are pushed into a new row of the data.frame. In other words, the extra columns
on line 6
I am trying to understand the behaviour of read.table() reading
delimited files (with header=TRUE and fill=TRUE) when there are more
(possibly spurious) columns than headings. I give below four small
data files, all of which have one or two extra columns added to one
line. Reading the first f
> Date: Sat, 25 Mar 2006 16:57:50 -0400
> From: Kjetil Brinchmann Halvorsen
> <[EMAIL PROTECTED]>
> Subject: Re: [Rd] How to capture t-score and p-values from t.test
> To: "Bernzweig, Bruce \(Exchange\)" <[EMAIL PROTECTED]>
> Cc: r-devel@r-project.org
>
> Bernzweig, Bruce (Exchange) wrote:
>>
At 05:21 PM 27/07/2005, Prof Brian Ripley wrote:
>On Wed, 27 Jul 2005, Gordon Smyth wrote:
>
>>Thanks for the reply. Apologies for checking only R patched rather than
>>R-devel.
>>
>>I guess that this means that someone must have a use for
>>allowEscapes=TR
Thanks for the reply. Apologies for checking only R patched rather than
R-devel.
I guess that this means that someone must have a use for allowEscapes=TRUE
when read reading a file in table format into a data frame. It is hard to
imagine.
Gordon
At 04:59 PM 27/07/2005, Prof Brian Ripley wrote
>To: [EMAIL PROTECTED]
>From: Gordon Smyth <[EMAIL PROTECTED]>
>Subject: R 2.1.1: read.table processes C-style escapes
>Date: Wed, 27 Jul 2005 12:51:45 +1000
>
>In R 2.1.1, the default behaviour of scan() was changed to process all
>C-style escapes, even when a delimi
r1.1
year 2005
month07
day 22
language R
-------
Dr Gordon K Smyth, Senior Research Scientist, Bioinformatics,
Walter and Eliza Hall Institute of Medical Research,
1G Royal Parade, Parkville, Vic 3050, Australia
Tel: (03) 9345 2326, Fax (03) 9347 08
dians are
> > different. The reason is that the median in one case
> > coincides with the
> > first quartile, and in the second case with the third quartile.
> > Is there a recommended way of displaying the median visibly in these
> > cases? Setting notch=TRUE displays
At 05:22 PM 14/06/2005, [EMAIL PROTECTED] wrote:
> >>>>> On Tue, 14 Jun 2005 08:42:59 +1000 (EST),
> >>>>> Gordon K Smyth (GKS) wrote:
>
> > On Tue, June 14, 2005 12:49 am, Thomas Lumley said:
> >> On Mon, 13 Jun 2005, Gordon K Smyth wrote:
>Note also that R does have a User Guide, i.e., while there is plenty of
>excellent documentation,
>there is no single document which is a guide to the whole project.
Oops, I meant to write "R does not have a User Guide".
Just to explain this further, the citation() function asks me to cite a
On Tue, June 14, 2005 12:49 am, Thomas Lumley said:
> On Mon, 13 Jun 2005, Gordon K Smyth wrote:
>
>> This is just a note that R would get a lot more citations if the
>> recommended citation was an article in a recognised journal or from a
>> recognised publisher.
>>
On Tue, June 14, 2005 1:30 am, Ted Harding said:
> Is a journal reference necessary? I have seen many articles where
> the statistical software (S-Plus, SPSS, SAS, etc.) was "cited" as
> the User Manual, usually only available from the supplier of the
> software, sometimes with a WWW URL. Such case
This is just a note that R would get a lot more citations if the recommended
citation was an
article in a recognised journal or from a recognised publisher.
I use R in work leading to publications often, and I strongly want to give the
R core team credit
for their work. However I find that I ca
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