Sent in error (and not moderated).
On 03/02/2025 17:36, Prof Brian Ripley via R-devel wrote:
Tomas,
I am thinking of writing something for R-devel, and hope to have your
input first.
I get moderated on R-devel as I am now subscribed as brian.ripley@R-
project.org which of course I cannot
work using the same compiler, but I could not
find that documented and see signs that e) might differ in C17 and C23
modes.
I need to look again at the C and C++ standards which with my vision I
need to do in very small chunks. Oh for the vision I once had!
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ults to C23. We will back that out pending further
testing.
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in R?
It would have been helpful to tell us what you wanted to do with them.
Thank you for your time!
Kind regards,
Tony
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in R devel. If this is the case, it would be great if you could provide a
patch that I can apply to v4.4.2 until the next R release (or maybe I
should just specify an older C standard?).
Look at the definition of NORET in R_ext/Error.h. You want r87411;
r87411 | ripley | 2024-12-01 10:11:10 +
.
This is known for an LTO build with gcc 14.2.x -- not normally used on
Windows though. It is a over-aggressive warning, one we are working on
for R-devel.
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__
first. That makes changing the return value too
disruptive.
If the issue is only comparison, getNamespaceVersion's return value
could be given a class and an Ops group method, but the existence of
compareVersion() makes that less compelling.
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Brian D. Ripley, rip.
ever, the gfortran
build recommended in the manual is quite old and this has apparently
differed by GCC version (and is not documented in the 'man gfortran' I
have).
I'll change the manual to mention both forms, and that it is only
sometimes needed (not on my cur
. See the posting guide for the "at a
minimum" information you also did not provide
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ggests we get about 20 a year
with M1mac numerical issues, about half of which were mirrored on the
x86_64 'noLD' checks.
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_
e a shell.
The 'original motivation' was to work reliably! Back in the days of
Windows 95 when many parts of Windows only supported 8+3 names.
Regards,
Yihui
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Please do re-read the posting guide. It has ' been so for 20
. Ripley, rip...@stats.ox.ac.uk
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the correct recipient, you are kindly requested to
notify the sender immediately, to cancel it and not disclose the
contents to any other person.
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/src/R-devel/src/library/utils/R/sysdata.rda","../../../library/utils/R")
zsh: killed R_DEFAULT_PACKAGES=NULL ../../../bin/R --vanilla
or simply
tools:::sysdata2LazyLoadDB
zsh: killed R_DEFAULT_PACKAGES=NULL LC_ALL=C R_ENABLE_JIT=0 TZ=UTC
../../../bin/R
If it is mac
stat.ethz.ch/mailman/listinfo/r-devel
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On 03/04/2023 15:24, Detlef Steuer wrote:
Am Mon, 3 Apr 2023 15:13:58 +0100
schrieb Prof Brian Ripley :
On 03/04/2023 14:07, Detlef Steuer wrote:
Hi!
The same Inar reported for rawhide
(https://stat.ethz.ch/pipermail/r-devel/2023-March/082482.html)
is true for SuSE's distros.
Right
to
R 4.2.3 patched although possibly untested there.)
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it is the compiler and not your fault. We
would like you to file a bug report specifically about your code and get
agreement from the GCC developers that this is their bug.
Best wishes,
Manuel.
On 01/03/2023 17:02, Prof Brian Ripley wrote:
Dear maintainer,
Please see the problems shown
compiler.
There are a lot of R users still on RHEL 7, so it would be great to
know what to expect for the next release.
an D. Ripley, rip...@stats.ox.ac.uk
Emeritus Professor of Applied Statistics, University of Oxford
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Ripley wrote:
On 06/10/2022 09:41, Berwin A Turlach wrote:
G'day all,
On Thu, 6 Oct 2022 10:15:29 +0200
Martin Maechler wrote:
Davis Vaughan
on Wed, 5 Oct 2022 17:04:11 -0400 writes:
> # Weird, where is the `NA`?
> as.Date(x)
> #> [1] "2013-01-31&quo
Berwin
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LLVM documentation for supported
platforms, but its implementation clearly differs.)
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https
, however:
tmt% diff survival.Rcheck/survival-Ex.Rout
survival/tests/Examples/survival-Ex.Rout.save
3926c3926
< Time elapsed: 10.328 0.133 10.461 0 0
---
> Time elapsed: 10.399 0.08 10.48 0 0
Very minor.
Not a CRAN issue (R CMD check is not from CRAN). Looks like you did not
follow
1
make[1]: Leaving directory '/home/steve/build/r-devel/src'
make: *** [Makefile:61: R] Error 1
I then did `make clean', ran configure and make again, and got the same
failure. Is this a known issue and is there a fix?
Steve Berman
__
R
as calls and expressions. Pairlists are coerced to lists for
extraction by ‘[’, but all three operators can be used for
replacement.
Cheers,
Matt
~~
Matthew Blackwell
Associate Professor of Government
Harvard University
https://www.mattblackwell.org
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emory not mapped'
Traceback:
1: La.svd(x, nu, nv)
2: svd(test)
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R=nl_NL.UTF-8 LC_NAME=C
> [9] LC_ADDRESS=C LC_TELEPHONE=C
> [11] LC_MEASUREMENT=nl_NL.UTF-8 LC_IDENTIFICATION=C
>
> attached base packages:
> [1] stats graphics grDevices utils datasets methods base
>
> loaded via a namespace (and not attached):
> [1] c
pted for all of
2021. As it is deprecated and AFAIK untested, it could be broken at any
time. OTOH, no one has mentioned in my hearing a wish to actually
remove it.
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_
.
Travers
[[alternative HTML version deleted]]
Please do re-read the posting guide (and 'Writing R Extensions').
Also, this is not r-package-devel
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ression specified by LazyDataCompression is relevant.
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like a line in the iswprint table got deleted in the merge from
R-devel. I will try to set up some automated checks to see if I can
find any other problems, but that will take a few days.
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AaBb some
AB...ab and some locales even sort aAbB (although I have never seen that
recommended for human usage).
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2)? Has anyone tested this?
Yes: I have no idea why you would think otherwise. All mclapply uses is
forking, and the OS on an M1 Mac is the same as that on a (Big Sur)
Intel Mac (in many cases literally the same, with the same bi-arch
executables).
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Brian D. Ripley, rip...
pected, as this is an area being worked on (to try to
remove some system-dependent behaviour). However, I cannot reproduce
this easily:
chartr("\u2019", "'", "abc\u2019")
[1] "abc'"
As I say, work in progress.
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fc058512c8)
at ../csu/libc-start.c:308
#23 0x0040107a in _start ()
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, and Rd2pdf would just read it in with readRenviron().
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. That is, it is rare to actually need
to specify C11 mode.
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-libpng --with-jpeglib --with-libtiff
--with-ICU --with-pic --with-x --with-lapack --with-pcre2
I also appended the corresponding config.log:
It did not get through the filters.
Thank you,
Wim
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t;)
png(filename = fname, width = 500, height = 500, type="cairo")
hist(rnorm(20))
dev.off()
library(tcltk)
tkimage.create("photo", file = fname)
works for me on Catalina.
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ng memory leaks.
We know R has 'leaks': it does not release memory in use right up to the
end (and some OS things do too).
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___
ifferent one (3
packages by the same author misusing RCurl to set a <= 2014 root
certificate bundle) is seen only on Fedora.
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It is known, with a known workaround, see e.g.
https://www.stats.ox.ac.uk/pub/bdr/memtests/README.txt . Set
suppressions in ~/.valgrindrc, e.g. the CRAN check machine has
--suppressions=/data/blackswan/ripley/wcsrtombs.supp
It is an issue in your OS (glibc), not TRE nor R.
On 10/06/2020 00
0-92
050663 Bucharest sector 5
Romania
https://adriandusa.eu
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Eme
ple's lives get more complicated.
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ina.]
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X11.so.6+0x5a984)
SUMMARY: AddressSanitizer: heap-use-after-free
(/usr/lib/x86_64-linux-gnu/libasan.so.4+0x5a0f6)
--
The window with a choice of machines never appeared.
Terry T.
[[alternative HTML version deleted]]
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have been restarted and DNS is slowly recovering (including
delivering your message).
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https
onfig:/usr/local/lib/pkgconfig:/usr/lib/pkgconfig
/usr/local/clang8/bin/clang++ -std=gnu++11 -dynamiclib
-Wl,-headerpad_max_install_names -undefined dynamic_lookup
-single_module -multiply_defined suppress -L/Users/ripley/R/R-devel/lib
-L/usr/local/clang8/lib -L/usr/local/lib -o rgl.so ABCLine
me implies). Perhaps you could give us some
idea of what you are trying to do and how many files take how many
seconds on what OS/filesystem.
For completeness, dir.exists() can be used with more than one path and
potentially has the same issue.
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Brian D. Ripley, rip...@stat
aspects of the RNG were changed in r76160: to isolate change that
you can (with current R-devel) use
setenv _R_RNG_VERSION_ 3.5.0
and re-check.
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___
der Windows 7 nor an old version of R on
my Mac. Thanks. Spencer
Thanks,
Spencer Graves
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Brian D. Ripley, rip...@stats.ox.ac.uk
Emeritus Professor of Applied Statistics, University of Oxford
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R-dev
dit(".Rprofile", editor="'subl -n'")
sh: 'subl -n': command not found
Warning message:
error in running command
However, the interesting bit happens when I run
edit(1:10, editor="'subl -n’")
It does open Sublime Text. It seems that `file.edit`
that int is 32 bit and will not compile without it
(src/main/arithmetic.c) ... so int and int32_t are the same on all
platforms where the latter is defined.
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> On 15 Aug 2018, at 12:48, Duncan Murdoch wrote:
>
>> On 15/08/2018 7:08 AM, Benjamin Tyner wrote:
>> Hi
>> In my R package, imagine I have a C function defined:
>> void myfunc(int *x) {
>>// some code
>> }
>> but when I call it, I pass it a pointer to a longint instead of a
>
p you with that, and it is most effective to contact
him directly.
RProtoBuf does not compile on macOS against the current/latest version
3.6.0 of protobuf (sic), and I have reported to the maintainer. It did
compile against 3.5.1, and you could compile from sources yourself.
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for a long time, the
probably-stale info was removed. It looks like the info was added in
late 2005, so you could try grabbing R sources from, say, 2007.
Sincerely,
Erin
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sed to generate the configure script) but I'd prefer to leave the
library's code untouched if possible.
You don't need to (and most likely should not) use the C[XX]FLAGS it
generates ... just use the flags which R passes to the package to use.
-Winston
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Done.*
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_
It really isn't clear why anyone would want to use anything other than
the second option (.rda) for data() unless other manipulations are
needed (e.g. to attach a package). But that option was not part of the
original implementation.
--
Brian D. Ripley, rip...@stats.ox.ac.uk
> On 19 Sep 2017, at 11:53, lille stor wrote:
>
> Hi,
>
> I am trying to build R using Visual Studio 2010 but without success. My
> question is if it possible build R with this compiler anyway?
It has been done, in the distant past. However, none of the attempts produced
a build which coul
in advance!
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"" ""
> Encoding(.Last.value)
[1] "latin1" "unknown" "unknown"
as expected.
Again, this is not the case with iconv()
x_iutf8 <- iconv(x, to = "UTF-8")
Encoding(x_iutf8)
x_inat <- iconv(x_iutf8, from = "UTF-8")
E
ed power outage,
and it seems unlikely it can be resurrected.
But questions about CRAN should be sent to CRAN, and you should give
credit where it is due if you discuss such services in public fora.
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ench_Belgium.1252
[3] LC_MONETARY=French_Belgium.1252 LC_NUMERIC=C
[5] LC_TIME=French_Belgium.1252
attached base packages:
[1] stats graphics grDevices utils datasets methods base
other attached packages:
[1] shiny_1.0.3
loaded via a namespace (and not attached):
[1] compiler_3.4
ler version any time soon, and if there are any other
workarounds than having two versions of the compiler.
Thanks.
Chris
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: CRAN too does not appreciate HTML mail.
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Office: A 4.23
Email: pd@cbs.dk Priv: pda...@gmail.com
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- print(tempdir())
# [1] "/tmp/user/1069138/RtmpGc9M5z"
identical(a, b)
# [1] TRUE
dir.exists(b)
# [1] FALSE
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read -lmkl_core -lpthread -lm"
Many thanks,
Jing Hua
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not
so much used on Unix nowadays).
Finally I'd like if Rgui would remember the state of the MDI main window
(maximized or not, maybe position and size also): Currently it always starts
maximized.
AFAIR that is part of the configuration you can save.
Regards,
Ulrich
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s, has been discussed
previously, but I cannot locate it.
Is the above a bug in R, a FAQ, a build error, overzealous compiler
optimization, and / or ...?
Thanks,
Henrik
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te: it is part of GNU Bintools, hence bundled with gcc in Rtools.
So is 'nm', which may appear in a similar message (and on Windows
means 'nm.exe').
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On 21/03/2017 16:38, Dirk Eddelbuettel wrote:
Hi Brian,
On 21 March 2017 at 07:29, Prof Brian Ripley wrote:
| As of today's commit r72375 all packages with native-routine
| registration of C or Fortran routines need to be reinstalled in R-devel
| (and that include some of the recomm
CRAN/BioC packages can be reinstalled.
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ame) : there is no package called 'MASS'
| Calls: asNamespace ... tryCatch -> tryCatchList -> tryCatchOne ->
| Execution halted
I hope this helps!
Best regards,
Peter
[1] http://nixos.org/
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On 14/02/2017 16:25, Prof Brian Ripley wrote:
Registration of 'native routines' (entry points in compiled code loaded
into R) has been available for over 14 years,
...
(There are reports that the check in 'R CMD check' on Windows sometimes
fails to detect use of registra
On 14/02/2017 17:28, Avraham Adler wrote:
On Tue, Feb 14, 2017 at 11:25 AM, Prof Brian Ripley
wrote:
Registration of 'native routines' (entry points in compiled code loaded into
R) has been available for over 14 years, but few packages make use of it
(less than 10% of those on
eck' on Windows sometimes
fails to detect use of registration. This is being looked into:
meanwhile say so in a CRAN submission if it happens to you.)
[*] R CMD check output is unchanged.
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On 10/02/2017 19:27, Prof Brian Ripley wrote:
Note that there are at least 5 separate png() devices, so Linux was not
using the (default) device used on Windows.
In general, the device-limits info is not on the help page because we do
not know it. On Windows the default device limits depend on
gratefully accept them..
Martin Maechler
>> sessionInfo()
> R version 3.3.2 Patched (2017-02-07 r72138)
> Platform: i386-w64-mingw32/i386 (32-bit)
> Running under: Windows 7 (build 7601) Service Pack 1
> --
> Dari
on or can test
something.
Many thanks in advance,
Rainer Hurling
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x27;, at a time when there were 3200 CRAN packages.
My expectation was to be much farther off
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t for the issue:
https://bitbucket.org/rpy2/rpy2/issues/389/failed-to-compile-with-python-360-on-32
)
Laurent
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ly loaded snow, then clusterExport failed because we had
"varlist" and not "list".
Are these different on purpose?
Yes.
('list' is an unhelpful name for an argument that is not a list.)
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!
At the moment, I'm not sure where we should go.
Of course, I could start experiments using my own 'Rmpfr'
package where I can (with increasing computational effort!) get
correct values (for increasingly larger arguments) but at the
moment, I don't see
S # we want this: export MC_CLUSTER_TYPE=FORK Rscript
/path/to/script.R |
Best Regards
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This is a non-HTML list, as the posting guide told you. And using a
real name adds credibility.
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checkLicense().
Rather, the analysis code has been told about the current licence for
standard packages.
Also, in find.package(), the shortcut list of standard packages is
missing "compiler".
Which was intentional when the code was written (it is just a shortcut)
but as 'compile
experimenting with a compiler that cannot compile
the Objective-C file, qdCocoa.m, and I don't need graphics for this experiment.
Max OS X El Capitan, R-3.2.4.
Thanks
Mick Jordan
--
Brian D. Ripley, rip...@stats.ox.ac.uk
Emeritus Professor of Applied Statist
hams site (
http://r-pkgs.had.co.nz/release.html), but could not determine if this was
appropriate for version update submissions as well.
There is a list for discussing package preparation, r-package-devel.
Thank you for sharing any advice!
--
Brian D. Ripley, rip...@sta
..
Thanks
Mick Jordan
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--
Brian D. Ripley, rip...@stats.ox.ac.uk
Emeritus Professor of Applied Statistics, University of Oxford
___
ings do reserve excessive amounts of VM that they do not
use and so cannot be run under a sensible limit.
--
Brian D. Ripley, rip...@stats.ox.ac.uk
Emeritus Professor of Applied Statistics, University of Oxford
__
R-devel@r-proje
times in the past. (Note too that DLLs can be removed as well as added,
another point of coding errors.)
Patches to the R sources (development trunk in subversion at
https://svn.r-project.org/R/trunk/ ) are very welcome!
Martin Maechler
ETH Zurich & R Core Team
--
Brian D. Ripley,
-help includes
--ignore-vignettesskip all tests on vignettes
[This is really intended for those doing automated checking, not end users.]
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Brian D. Ripley, rip...@stats.ox.ac.uk
Emeritus Professor of Applied Statistics, University of Oxford
o contain the following
line at the end among the "Hardcoded dependencies":
survival.ts: Matrix.ts
Cheers,
Berwin
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Brian D. Ripley,
complete workaround for R-devel and 3.2.4.
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Brian D. Ripley, rip...@stats.ox.ac.uk
Emeritus Professor of Applied Statistics, University of Oxford
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h is being ignored when the package is attempted to be
loaded at the end of the installation process. How can the installation be
successful ?
--
Dario Strbenac
PhD Student
University of Sydney
Camperdown NSW 2050
Australia
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Brian D. Ripley,
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