Re: [Rd] gcc ubsan alignement test --minimal gcc version?

2015-10-14 Thread kaveh
3f 00 00 80 3f 00 00 80 3f 00 00 80 3f 00 00 80 3f 00 00 80 3f **Though the original authors bear no responsibility for these scripts, I have found many of these commands on this file: https://github.com/rocker-org/r-devel-san/blob/master/Dockerfile On 2015-10-14 10:10, Prof Brian Ripley wrot

[Rd] gcc ubsan alignement test --minimal gcc version?

2015-10-14 Thread kaveh
Dear All, I'm trying to implement the section of the manual pertaining to the gcc-ubsan test carried by CRAN on my local computer (ubuntu 14.04): http://www.stats.ox.ac.uk/pub/bdr/memtests/gcc-UBSAN/README.txt I was wondering whether someone could tell what the minimal version of

Re: [Rd] Linking to the BH package introduces CRAN warnings

2014-11-05 Thread kaveh
, boost/math/distributions/ is causing the warnings. Best regards, On 2014-11-05 13:43, Dirk Eddelbuettel wrote: On 5 November 2014 at 00:55, kaveh wrote: | Dear all, | | | the simple code in below, when send to the | win-builder returns the following (and no other) | warning: | | | * checking

Re: [Rd] Linking to the BH package introduces CRAN warnings

2014-11-04 Thread kaveh
; Map(yi,n)=GetQs(x); } } So I guess, I should fill a bug report with the BH maintainer? Best regards, On 2014-11-04 23:52, Dirk Eddelbuettel wrote: Gentlemen, On 4 November 2014 at 23:36, kaveh wrote: | Dear Hadley, | | Thank you for this information, maybe the CRAN gods | will lo

Re: [Rd] Linking to the BH package introduces CRAN warnings

2014-11-04 Thread kaveh
message. I will post a simpler source code, tomorrow on this list. Best regards, On 2014-11-04 23:52, Dirk Eddelbuettel wrote: Gentlemen, On 4 November 2014 at 23:36, kaveh wrote: | Dear Hadley, | | Thank you for this information, maybe the CRAN gods | will look favourably on this case too, You

Re: [Rd] Linking to the BH package introduces CRAN warnings

2014-11-04 Thread kaveh
Dear Hadley, Thank you for this information, maybe the CRAN gods will look favourably on this case too, Best regards, On 2014-11-04 23:32, Hadley Wickham wrote: | However, it seems some of the codes in the BH package | might. At any rate, when I include some boost headers such as | boost/math

Re: [Rd] Linking to the BH package introduces CRAN warnings

2014-11-04 Thread kaveh
Dear Romain, Thanks for all these info, I will ponder this versus using some of the alternatives in the R sources Best regards, On 2014-11-04 22:01, Romain François wrote: > >> Le 4 nov. 2014 à 21:52, kaveh > <mailto:vakili.kaveh.em...@gmail.com>> a écrit :

Re: [Rd] Linking to the BH package introduces CRAN warnings

2014-11-04 Thread kaveh
-11-04 21:46, Romain François wrote: >> Le 4 nov. 2014 à 15:42, Dirk Eddelbuettel a écrit : >> >> >> On 4 November 2014 at 14:37, kaveh wrote: >> | Dear all, >> | >> | I'm working on a project that links to the BH package >> | (http://cran.r-

[Rd] Linking to the BH package introduces CRAN warnings

2014-11-04 Thread kaveh
Dear all, I'm working on a project that links to the BH package (http://cran.r-project.org/web/packages/BH/index.html). My packages doesn't call entry points which might terminate R nor write to stdout/stderr instead of to the console. However, it seems some of the codes in the BH package might

Re: [Rd] DIY Rtools?

2014-10-30 Thread kaveh
Thank you very much for all these infos! Best regards, On 2014-10-30 22:54, Duncan Murdoch wrote: On 30/10/2014, 2:45 PM, kaveh wrote: Dear List, I'm currently working on an R package that works great when compiled with GCC 4.8 under linux but which doesn't seem to work so

[Rd] DIY Rtools?

2014-10-30 Thread kaveh
Dear List, I'm currently working on an R package that works great when compiled with GCC 4.8 under linux but which doesn't seem to work so well when compiled by the win builder (http://win-builder.r-project.org/). After asking around a bit, the primary culprit could be the older version of GCC

Re: [Rd] Why is my R package still compiling with the O2 flag?

2014-09-26 Thread kaveh
nstallation and Admnistration' which has a comprehensive description of these flags. On 26/09/2014 10:00, kaveh wrote: When I install an R package with cpp codes such as rrcov via CRAN (under R 3.1.1, using no Makevars file and under Ubuntu 14.04 using GCC 4.8), the cpp code is compiled w

[Rd] Why is my R package still compiling with the O2 flag?

2014-09-26 Thread kaveh
When I install an R package with cpp codes such as rrcov via CRAN (under R 3.1.1, using no Makevars file and under Ubuntu 14.04 using GCC 4.8), the cpp code is compiled with the -o3 flag (in fact, looking at the Makeconf file this seem to again be the default since R 3.1.1) But when I install m