EMR 0.1.0 pretest 2024-08-26 23:13:00 277K
...
Best wishes,
Jing Hua
From: jing hua zhao
Sent: Monday, August 26, 2024 12:05 PM
To: Ben Bolker
Cc: R-devel
Subject: RE: [Rd] CRAN package submission
Thanks for the suggestion - I gather I might have done something wrong , since
I can
o know about the package and in my case I didn't receive email (so
as to click) to proceed to Step 3 of the submission.
From: Ben Bolker
Sent: Monday, August 26, 2024 11:43 AM
To: jing hua zhao
Cc: R-devel
Subject: Re: [Rd] CRAN package submission
Try the foghorn package for checking th
Dear CRAN / All,
I appeared not to receive any email notification after upload a package update
(to furnish the confirmation) -- is the system down?
Many thanks,
Jing Hua
__
R-devel@r-project.org mailing list
https://stat.ethz.ch/mailman/listinfo/r
Dear R-developers,
I came to a somewhat unexpected behaviour of read.csv() which is trivial but
worthwhile to note -- my data involves a protein named "1433E" but to save
space I drop the quote so it becomes,
Gene,SNP,prot,log10p
YWHAE,13:62129097_C_T,1433E,7.35
YWHAE,4:72617557_T_TA,1433E,7.73
: jing hua zhao
Sent: 10 March 2022 10:45
To: R-devel
Subject: Re: Compiling error with glmnet and nloptr
Just a note that I used R 4.1.2 and with R 4.1.3 I had the same issues
nevertheless I was able to go through with (not entirely sure preferable)
nloptr once abs() is changed into fabs
Dear All,
I haven't been able to compile the latest glmnet and nloptr from CRAN wth the
following error messages,
glmnet:
elnet_exp.cpp:141:59: required from here
glmnetpp/include/glmnetpp_bits/elnet_point/gaussian_base.hpp:90:39: error:
'self' was not declared in this scope
er/tests, short of adding a driver
program to pan.f and debug without R but before doing that any idea/insight
would be greatly appreciated.
Thank you so much,
Jing Hua Zhao
[[alternative HTML version deleted]]
__
R-devel@r-proje
)
prob2 = np.log(2.5e-50)
prob12 = np.logaddexp(prob1, prob2)
prob12
np.exp(prob12)
As expected they are in good agreement with R.
Best regards,
Jing Hua
From: Martin Maechler
Sent: 24 June 2019 09:29
To: jing hua zhao
Cc: William Dunlap; Martin Maechler; r
>>
>>
https://docs.scipy.org/doc/scipy-0.14.0/reference/generated/scipy.misc.logsumexp.html
>>
>> I don't know where this has been implemented in the R ecosystem, but
>> this sort of computation is the basis of the "Brobdingnag" package for
: peter dalgaard
Sent: 21 June 2019 16:24
To: jing hua zhao
Cc: Rui Barradas; r-devel@r-project.org
Subject: Re: [Rd] Calculation of e^{z^2/2} for a normal deviate z
You may want to look into using the log option to qnorm
e.g., in round figures:
> log(1e-300)
[1] -690.7755
> qnorm(-691, log=TRU
Dear Rui,
Thanks for your quick reply -- this allows me to see the bottom of this. I was
hoping we could have a handle of those p in genmoics such as 1e-300 or smaller.
Best wishes,
Jing Hua
From: Rui Barradas
Sent: 21 June 2019 15:03
To: jing hua zhao; r
Dear R-developers,
I am keen to calculate exp(z*z/2) with z=qnorm(p/2) and p is very small. I
wonder if anyone has experience with this?
Thanks very much in advance,
Jing Hua
[[alternative HTML version deleted]]
__
R-devel@r-project.org mai
ith
https://www.stats.ox.ac.uk/pub/bdr/gcc9/README.txt and those specification
might as well used in --configure-args above.
Besst regards,
Jing Hua
From: R-devel on behalf of jing hua zhao
Sent: 29 May 2019 15:49
To: r-devel@r-project.org
Subject: [Rd] use of buffers in s
A bit clarification -- tools::compactPDF() worked on the PDF at the current
directory for me -- not sure about building PDF on the fly.
From: R-devel on behalf of jing hua zhao
Sent: 08 July 2018 16:00
To: Søren Højsgaard; r-devel@r-project.org
Subject: Re
Ｉdid this inside R; not ideal but worked.
From: R-devel on behalf of Søren Højsgaard
Sent: 08 July 2018 15:46
To: r-devel@r-project.org
Subject: Re: [Rd] [R] consider running tools::compactPDF(gs_quality = "ebook")
Dear all,
I run
R CMD build --compact-vigne
The 2015 does contain three files.
From: jing hua zhao
Sent: 10 February 2017 00:13
To: r-devel@r-project.org
Subject: issue with unz()?
Dear R-devel,
url0514 <-
"http://data.dft.gov.uk.s3.amazonaws.com/road-accidents-safety-data/Stats19_Data_2
Dear All,
I would like to seek advice regarding .Fortran as I was referred to a query
about package pan that the sets of results may alternate between iterations.
For reference I have extracted the relevant Fortran as with the R code below.
Note several packages based on JL Schafter's S-PLUS c
> From: x...@yihui.name
> Date: Tue, 27 Mar 2012 16:40:04 -0500
> To: r-devel@r-project.org
> Subject: Re: [Rd] CRAN policies
>
> I have been wondering if it is possible to automate the checking
> process to reduce human efforts, e.g. automatically check the packages
> submitted to FTP, and send
Dear R-developers,
I am wondering if it is possible to add bookmarks automatically to individual
figures for pdf() when multiple figures are produced? If so, it would be very
handy.
Best regards,
Jing Hua
[[alternative HTML version deleted]]
Dear DevelopeRs,
We are performing some analysis/simulation involving dense genetic data with
plspm. Owing to the high collinearity of the neighboring SNPs (independent
variables) the function would fail frequently if bootstrap option is used. In
some cases I can catch this as error via option
http://win-builder.r-project.org/
>
> Uwe Ligges
>
>
>
> On 26.04.2010 12:55, jing hua zhao wrote:
> >
> > Dear R developers,
> >
> > I ran into some problems that I wish to get around.
> >
> > Following the recommendation from "Buildi
Dear R developers,
I ran into some problems that I wish to get around.
Following the recommendation from "Building R for Windows" (Duncan's site) I
was able to obtain some files from Brian's site for relevant tools for
cross-compile. Initially I was able to cross-compile Windows packages happi
Hi Terry,
Not aware about the issue, e.g., from
$ uname -a
Linux c06.mrc-epid.private.cam.ac.uk 2.6.9-89.0.23.ELsmp #1 SMP Fri Mar 5
23:27:13 EST 2010 x86_64 x86_64 x86_64 GNU/Linux
I got
> library(kinship)
Loading required package: survival
Loading required package: splines
Loading required
Dear R experts,
I had some difficulties to build R on Linux (cross-build) and Windows (via
Rtools) and hope it is appropriate to post for help,
Our system has gcc 3.4.6 on RedHat Linux x86_64. With the help of Makefile-rcb
by Yan and Rossini (setting BUILD=CROSS, R_EXE, F77 and FLIBS to g77
, 7 Feb 2008 13:04:58 -0800
> From: [EMAIL PROTECTED]
> To: [EMAIL PROTECTED]
> CC: [EMAIL PROTECTED]
> Subject: Re: [Rd] pnorm
>
> On Thu, 7 Feb 2008, jing hua zhao wrote:
> >
> > I calculated a two-sided p values according to 2*(1-pnorm(8.104474)),
> > which
Dear R list,
I calculated a two-sided p values according to 2*(1-pnorm(8.104474)), which
gives 4.440892e-16. However, it appears to be 5.30E-16 by a colleague and
5.2974E-16 from SAS. I tried to get around with mvtnorm package but it turns
out to be using pnorm for univariate case. I should
Here is what I noted down for our system.
To reset src/gnuwin32/MkRules as appropriate
BUILD=CROSS## if cross-building, is this gcc3 or gcc4?CROSS-GCC=gcc3
R_EXE='/home/jhz22/RCrossBuild/LinuxR/bin/R'> Date: Thu, 11 Oct 2007 11:15:08
+0100> From: [EMAIL PROTECTED]> To: [EMAIL PROTECTED]> Subjec
Dear R-devlopers,
I am experiencing problem with R 2.2.0 after installing Oracle 10g on my
Windows XP system. It simply crashes but Rgui appears to be functioning.
After I deinstalling Oracle 10g, R.exe start to function again. Any idea how
to make them both working?
Many thanks,
Jinghua
__
yes, it does work now by putting the R environments in front of the original
%path%.
>From: Duncan Murdoch <[EMAIL PROTECTED]>
>To: jing hua zhao <[EMAIL PROTECTED]>
>CC: r-devel@r-project.org
>Subject: Re: [Rd] R CMD check
>Date: Wed, 14 Sep 2005 07:04:57 -0400
>
K\2.0\bin;C:\Prog
ram Files\WinSCP3\;C:\Program Files\PC-Pine
Jing Hua Zhao
__
R-devel@r-project.org mailing list
https://stat.ethz.ch/mailman/listinfo/r-devel
30 matches
Mail list logo
