/r_2example_8C.html
BTW, I strongly disagree that C++ does not have a bright future!
Best regards,
Christian
_._._._._._._._._._._._._._._._._._
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V.i.e.n.n.a A.u.s.t.r.i.a
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P.S.: Accessing a
Dear Jack,
First, please do not use r-help or r-devel to ask Bioconductor-related
questions, Bioconductor has its own support site for BioC packages:
https://support.bioconductor.org/
Second, please note that ROOT_6.x cannot be used for xps.
In the README file I mention for Yosemite:
ftp://ro
Simon Urbanek wrote:
On Sep 26, 2015, at 5:06 PM, cstrato wrote:
Dear Dirk,
Yes, I know, however forget for one moment R.
If I use tar independent of R it still should not create these hidden files.
BTW, do you know where these hidden files are stored on the Mac?
Please consider readi
, but it will not explain this
behavior which suddenly popped up.
Best regards,
Christian
On 09/26/15 23:30, Dirk Eddelbuettel wrote:
On 26 September 2015 at 23:06, cstrato wrote:
| Dear Dirk,
|
| Yes, I know, however forget for one moment R.
No we can't. Your question was about to make
at 22:41, cstrato wrote:
| Dear Simon,
|
| Thank you very much for your help, it did solve my problems!! Great!
|
| I have googled COPYFILE_DISABLE and found the following site which does
| explain the issue with tar on Mac OS X, see:
|
http://unix.stackexchange.com/questions/9665/create-tar
lude
resource forks.
Cheers,
Simon
On Sep 26, 2015, at 3:30 PM, cstrato wrote:
Dear all,
When running R CMD check on my Mac (Yosemite 10.10.5) I get suddenly NOTEs and
WARNINGs
that my tar.gz file does contain hidden files.
However, when checking the corresponding directories with
me from Spotlight. This did not help. Adding
the volume
again and thus forcing a rebuild for Spotlight did not help either.
What could I do to remove these apparently non-existing hidden files?
Best regards
Christian
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V.i.e.n.n.a A.u.s.t.r.i.a
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On 06/23/2014 03:18 PM, Hervé Pagès wrote:
Hi Christian,
On 06/23/2014 11:54 AM, cstrato wrote:
Dear Romain,
I do not know enough about compilers, but as far as I remember, they
'work' from right to left,
Not necessarily. So you should not rely on that. This is what the
(somewh
s a recent thread on this specific aspect of ++ recently, but I
forgot which email list.
Kasper
On Mon, Jun 23, 2014 at 2:54 PM, cstrato mailto:cstr...@aon.at>> wrote:
Dear Romain,
I do not know enough about compilers, but as far as I remember, they
'work' from right to
14 7:13 PM, Romain François wrote:
Le 23 juin 2014 à 18:28, cstrato a écrit :
Dear Romain,
Thank you for your suggestions, I like especially the first one.
However, you did not explain why I have never got this warning message on any
compiler, and why only one of the two identical Ubuntu com
:45 PM, Romain François wrote:
Le 23 juin 2014 à 15:20, cstrato a écrit :
Dear all,
Since many years the following C++ code does compile on ALL Bioconductor
servers (Linux, Windows, Mac) without any warnings:
Int_t numsels = 0; //number of selected entries
...
for (Int_t i=0; i
;++numsels' with 'numsels+1'?
Best regards,
Christian
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letion of interim files?
(The help file?texi2pdf does not mention that this structure is necessary.)
Best regards
Christian
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V.i.e.n.n.a A.u.s.t.r.i.a
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the next Bioconductor release on October.
Best regards,
Christian
On 8/30/13 9:36 PM, Henrik Bengtsson wrote:
On Fri, Aug 30, 2013 at 12:21 PM, cstrato wrote:
Dear Duncan, dear Marc,
Thank you for your fast reply.
Can you please tell me:
If texi2pdf() won't delete files how are t
Dear Henrik,
I am trying to attach the 'QAReport.Rnw' file which I am using on my Mac
to reproduce your problem.
Best regards,
Christian
On 8/30/13 9:50 PM, cstrato wrote:
Dear Henrik,
Thank you for your explanation.
Yes, this behavior is reproducible many times.
When I copy
-- end QAReport.Rnw
On 8/30/13 9:46 PM, Henrik Bengtsson wrote:
On Fri, Aug 30, 2013 at 12:40 PM, Marc Schwartz wrote:
On Aug 30, 2013, at 2:20 PM, Henrik Bengtsson wrote:
On Fri, Aug 30, 2013 at 12:14 PM, Duncan Murdoch
wrote:
On 30/08/2013 3:09 PM, Marc Schwartz wrote:
On Aug 30
) and
newer. It is now simply comparing the set of files before and after.
Try with one of those and I'll bet you that clean=TRUE does what it
supposed to.
/Henrik
On Fri, Aug 30, 2013 at 1:05 PM, cstrato wrote:
Dear Henrik,
I am trying to attach the 'QAReport.Rnw' file which I
30/08/2013 3:09 PM, Marc Schwartz wrote:
On Aug 30, 2013, at 2:00 PM, cstrato wrote:
> Dear all,
>
> To create a *.pdf file from a *.Rnw file I do:
>
> olddir <- getwd();
> setwd(outdir);
>
> tryCatch({Sweave("QAReport.Rnw");
>
<%=numtrees%> Affymetrix <%=chiptype%> arrays of type '<%=chipname%>'.
you can compile it all in one go into a final PDF by pdf <-
R.rsp::rfile("template.Rnw.rsp"). RSP supports <%@include
file="..."%> statements and more if you wish to
ttp://cran.CH.r-project.org/web/packages/
---
Martin
> On 29.08.2013 14:08, cstrato wrote:
>> Dear all,
>>
>> On the CRAN website http://cran.r-project.org/ it is
>> currently not possible to get to the packages. Clicking
>&
t regards,
Christian
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3.0.0 Patched (2013-04-11 r62551)
Platform: x86_64-apple-darwin10.8.0 (64-bit)
I would check with R 3.0.1 patched and R devel before anything else,
especially when troubleshooting vignette-related issues.
/Henrik
On Wed, Aug 28, 2013 at 12:33 PM, cstrato wrote:
Dear all,
When running
for further
quality assessments. \\
\section*{Session Information:}
<>=
sessionInfo()
@
\end{document}
Can you please tell me why function buildVignettes() of the tools
package is no longer able to convert this file into a pdf-file?
Thank you in advance.
> sessionInfo()
R
uss this issue further privately.)
Best regards
Christian
On 5/9/11 7:20 AM, Hervé Pagès wrote:
Christian,
On 11-05-08 01:19 PM, cstrato wrote:
Dear Herve,
In my initial mail:
https://stat.ethz.ch/pipermail/r-devel/2011-April/060688.html
I wrote: "While R CMD check and R CMD INSTALL hav
M, Hervé Pagès wrote:
Hi Christian,
On 11-05-04 01:02 PM, cstrato wrote:
Dear Simon,
I did not complain about the R doing something wrong. I only wanted to
know why, after all these years, R CMD check does suddenly no longer
build the pdf-files of the vignettes. I also think that this is a leg
this would mean 140 minutes vs 60
minutes, i.e. the official development cycle would take 1 hr and 20 min
longer than my own development cycle. This is time I do not have.
Best regards
Christian
On 5/4/11 12:13 AM, Simon Urbanek wrote:
On May 3, 2011, at 5:15 PM, cstrato wrote:
No, I simp
No, I simply do "tar czf xps_1.13.1.tar.gz xps".
Best regards
Christian
On 5/3/11 11:11 PM, Simon Urbanek wrote:
> On May 3, 2011, at 4:48 PM, cstrato wrote:
>
>> Dear Uwe,
>>
>> Thank you, however since I use "R CMD INSTALL xps.tar.gz" my source co
es for the vignettes.
Best regards
Christian
On 5/3/11 10:13 PM, Uwe Ligges wrote:
On 03.05.2011 21:14, cstrato wrote:
Dear Uwe,
This is my development cycle:
First, I run R CMD check until there are no more warnings/errors. Since
years it was very convenient that R CMD check builds the pdf-fi
.
Best regards
Christian
On 5/3/11 1:07 PM, Uwe Ligges wrote:
On 02.05.2011 21:24, cstrato wrote:
Dear Prof. Ripley,
Thank you for your confirmation and explanation, I understand the reason
for cleaning things up to save memory. However, it was very convenient
to have this feature in earlier
contain "inst".
Best regards
Christian
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V.i.e.n.n.a A.u.s.t.r.i.a
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On 5/2/11 7:08 AM, Prof Brian Ripley wrote:
On Sun, 1 May 2011, Dun
D check no longer create the vignettes?
Best regards
Christian
On 4/27/11 10:16 AM, Uwe Ligges wrote:
On 26.04.2011 21:58, cstrato wrote:
Dear Duncan, dear Uwe,
Just now I have re-run everything, and today xps.Rnw can be converted to
a vignette w/o any problems using:
a, buildVignettes(
in any
vignettes.
Best regards
Christian
On 4/27/11 10:16 AM, Uwe Ligges wrote:
On 26.04.2011 21:58, cstrato wrote:
Dear Duncan, dear Uwe,
Just now I have re-run everything, and today xps.Rnw can be converted to
a vignette w/o any problems using:
a, buildVignettes("xps", dir="/Vo
maybe my Mac did not like
to work during eastern holidays).
However, one issue remains:
"R64 CMD check xps_1.13.1.tar.gz" no longer creates any pdf files for
the vignettes.
Best regards
Christian
On 4/25/11 9:31 PM, Duncan Murdoch wrote:
On 25/04/2011 3:16 PM, cstrato wrote:
Than
Thank you, I will try. Christian
On 4/25/11 9:31 PM, Duncan Murdoch wrote:
On 25/04/2011 3:16 PM, cstrato wrote:
Thank you.
My problem seems to be that at the moment the problem can be seen only
on my Mac, since e.g. the Bioconductor servers have no problems creating
the vignettes.
Then
Thank you.
My problem seems to be that at the moment the problem can be seen only
on my Mac, since e.g. the Bioconductor servers have no problems creating
the vignettes.
Best regards
Christian
On 4/25/11 8:55 PM, Duncan Murdoch wrote:
cstrato wrote:
Dear Duncan,
Thank you for your
4/25/11 8:00 PM, Duncan Murdoch wrote:
cstrato wrote:
Dear Uwe,
Your suggestion to look at the Sweave manual helped me to solve the
problem. It seems that in R-2.13.0 every chunk can use the code from
the chunk before but not from an earlier chunk.
I'm either misreading what you wrote, or
which
contains the vignette data such as xps.Rnw, but also xps.tex and xps.pdf.
In contrast, R-2.13.0 does not create the subdirectory "inst/doc" and no
vignettes are built.
One more issue:
In contrast to my former believe R CMD INSTALL does not build the
vignettes, neither in R-2.12
Dear Uwe,
On 4/24/11 10:37 PM, Uwe Ligges wrote:
On 24.04.2011 20:59, cstrato wrote:
Dear Uwe,
Thank you for your reply.
ad 2, Yes, i know that "xps-manual.pdf" is the collection of help pages,
I have mentioned it only to show that creating pdf-files does work for
R-2.13.0.
ad 1
"tmpdt_Test3RMA", verbose=FALSE)
In summary it is not quite clear to me what has changed in R-2.13.0 so
that chunk 5 no longer works.
BTW, the error:
SysError in : file
/tmpdt_DataTest3_cel.root/tmpdt_DataTest3_cel_20110424_201301.root can
not be opened
is not clear to me since "
_1.10.0
[4] affy_1.30.0 affyPLM_1.28.5affyio_1.20.0
[7] preprocessCore_1.14.0
Thank you in advance.
Best regards
Christian
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V.i.e.n.n.a A.u.s.t.r.i.a
e.m.a.i.l:
Dear all,
Meanwhile I found my mistake.
I forgot to add class QualTreeSet to 'initialize-methods.Rd'.
However, I am not sure if I should make 'initialize' public at all.
Best regards
Christian
On 3/11/11 9:58 PM, cstrato wrote:
Dear all,
I am just writing the documentati
case R CMD check does not complain, so why does it in the case
of 'QualTreeSet'?
Here is my:
> sessionInfo()
R version 2.12.1 (2010-12-16)
Platform: x86_64-apple-darwin9.8.0/x86_64 (64-bit)
locale:
[1] C
attached base packages:
[1] stats graphics grDevices utils datasets methods base
other attached packages:
[1] xps_1.11.4
Thank you in advance
Best regards
Christian
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V.i.e.n.n.a A.u.s.t.r.i.a
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Christian
On 9/15/10 11:53 PM, Hervé Pagès wrote:
On 09/15/2010 01:51 PM, Dirk Eddelbuettel wrote:
On 15 September 2010 at 22:39, cstrato wrote:
| Dear Duncan, dear Herve,
|
| Thank you both for your help and suggestions. I think that you are both
| right:
|
| In principle I do not want to put
rk Eddelbuettel wrote:
On 15 September 2010 at 22:39, cstrato wrote:
| Dear Duncan, dear Herve,
|
| Thank you both for your help and suggestions. I think that you are both
| right:
|
| In principle I do not want to put these files in the source tarball (and
| I did not in the past), however because o
I will try to change this part but I am not sure if this will solve the
problem.
Best regards
Christian
On 9/15/10 1:58 AM, Hervé Pagès wrote:
On 09/14/2010 03:30 PM, Duncan Murdoch wrote:
On 14/09/2010 6:08 PM, Hervé Pagès wrote:
On 09/14/2010 02:58 PM, cstrato wrote:
Dear Herve,
Thank
ar.gz" increases only from 4MB to
4.3MB. Thus in principle I could upload both files to SVN for BioC 2.7,
and this should eliminate the warning message. What is your opinion?
Best regards
Christian
On 9/14/10 11:32 PM, Hervé Pagès wrote:
Hi Christian,
On 09/14/2010 02:12 PM, cstrato wr
ected files will add another 4MB to the source code.
Best regards
Christian
On 9/14/10 9:59 PM, Simon Urbanek wrote:
On Sep 14, 2010, at 2:27 PM, cstrato wrote:
Dear Bill,
It would be great if this warning message could at least be suppressed on
Windows.
I think you're missing
interfere with this
step. Do you have any ideas?
Best regards
Christian
On 9/13/10 11:31 PM, Dirk Eddelbuettel wrote:
On 13 September 2010 at 23:07, cstrato wrote:
| Dear all,
|
| When running R CMD check on Windows XP to test my package I get the
| following warning message:
|
| "
Dear Bill,
It would be great if this warning message could at least be suppressed
on Windows.
Best regards
Christian
On 9/14/10 2:06 AM, William Dunlap wrote:
-Original Message-
From: r-devel-boun...@r-project.org
[mailto:r-devel-boun...@r-project.org] On Behalf Of cstrato
Sent
ng message.
Thank you in advance.
Best regards
Christian
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Dear Martin,
Thank you for this explanation.
Best regards
Christian
On 7/13/10 12:31 AM, Martin Morgan wrote:
On 07/12/2010 03:00 PM, cstrato wrote:
Dear Martin,
Thank you, you are right, now I get:
ann<- read.delim("Hu6800_ann.txt", stringsAsFactors=FALSE)
object.size(
(unlist(u2p))
865176 bytes
Nevertheless, a size of 1.2MB for a list representing 2 of 11 columns of
a table of size 754KB seems still to be pretty large?
Best regards
Christian
On 7/12/10 11:44 PM, Martin Morgan wrote:
On 07/12/2010 01:45 PM, cstrato wrote:
Dear all,
With great inter
ices utils datasets methods base
Best regards
Christian
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ot; I will
include the header file.
I did not realize that there is a dedicated r-sig-debian mailing list,
which I will use next time.
Best regards
Christian
Dirk Eddelbuettel wrote:
Christian,
On 10 February 2010 at 22:40, cstrato wrote:
| Dear Dirk,
|
| Thank you for your fast r
y with
that some OSes (especially MinGW32) include from more
common headers and some do not.
So this may be an OS issue but a compiler-version issue is more likely.
On Wed, 10 Feb 2010, cstrato wrote:
Dear Debian/Ubuntu experts,
For the second time users of my BioC package reported pro
clude " to some C++ *.cxx files did solve the problem.
The question is, why did this user need to add "#include " on
Debian, while this is not necessary on OpenSUSE11.1 and MacOS X?
Best regards
Christian
Dirk Eddelbuettel wrote:
Christian,
On 10 February 2010 at 22:02, cstra
ion error on
Debian/Ubuntu?
Which development headers/packages (glibc-headers, glibc-kernheaders??)
need to be installed on Debian/Ubuntu?
Best regards
Christian
_._._._._._._._._._._._._._._._._._
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V.i.e.n.n.a A.u.s.t.r.i.a
e.m.a.i.l:
Have a look at:
http://www.bioconductor.org/packages/release/bioc/html/xps.html
It is almost completely C++
Regards
Christian
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V.i.e.n.n.a A.u.s.t.r.i.a
e.m.a.i.l:cstrato at aon.at
my case neither option works on Vista, see my more
detailed question at:
https://stat.ethz.ch/pipermail/r-devel/2009-September/054843.html
If you have any idea in this case I would appreciate it very much.
Best regards
Christian
Simon Urbanek wrote:
On Oct 15, 2009, at 17:01 , cstrato wrote
instead of option "/MD"?
2, Will the proposed settings to build the DLL still be valid for the
upcoming Windows 7?
Best regards
Christian
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V.i.e.n.n.a A.u.s.t.r.i.a
e.m.a.i.l:
/MD" is used when compiling programs
with VC++.)
Best regards
Christian
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_
only option.
Best regards
Christian
Duncan Murdoch wrote:
On 18/09/2009 6:12 PM, cstrato wrote:
Dear all,
Please, please I really need your help, since I am not able to solve
the problem myself:
It seems that until now most Windows users of my Bioconductor package
"xps" use Windo
Vista library "xps.dll"
compiled with option "/MD" does work perfectly fine when running from
within ROOT!
Please, can anybody tell me why Rterm on Vista crashes when running
library(xps)?
It seems that for option "/MD&qu
trying to load "library(xps)".
Best regards
Christian
Gábor Csárdi wrote:
On Sun, Mar 29, 2009 at 9:31 PM, cstrato wrote:
[...]
- - - - - - - -
Created c:\home\Rabbitus\CRAN\xps\chm\xps.chm, 166,306 bytes
Compression decreased file by 442,726 bytes.
** building package i
of R users under Windows that make use of a non-gcc
compiler and is reading this list is quite close to 0. Hence you will
probably have to find it out yourself.
Uwe Ligges
cstrato wrote:
Dear all,
For certain reasons I have to compile the source code of my package
on Windows XP using Mi
know why I can build my package w/o problems when using option
/MT but not when using option /MD?
As a note, I am using "R-2.9.0alpha-win32.exe" which I have downloaded
today.
Thank you in advance.
Best regards
Christian
_._._._._._._._._._._._._._._._._._
C.h.r.i.s.t.i.a.n
o section 6 of this:
http://www.bioconductor.org/packages/2.4/bioc/vignettes/Biobase/inst/doc/BiobaseDevelopment.pdf
Best wishes
Wolfgang
Wolfgang Huber EMBL-EBI http://www.ebi.ac.uk/huber
cstrato wrote:
Dear all,
Since my package
ility or special trick, which would avoid this error
message?
Are there other possibilities to access an additional data.frame from an
existing class?
Is there something like an "evolution" of S4 classes, which
distinguishes the different im
I understand, thank you, Christian
Gabor Grothendieck wrote:
Any Windows batch script that uses the Windows find command.
On Sat, Dec 6, 2008 at 1:08 PM, cstrato <[EMAIL PROTECTED]> wrote:
Dear Gabor,
Sorry, my mistake, here are my correct path settings:
System Path:
C:\Rtools
h to MiKTeX too (if you have it in a
standard location).
On Sat, Dec 6, 2008 at 9:41 AM, cstrato <[EMAIL PROTECTED]> wrote:
Dear Duncan, dear Gabor,
Thank you for this additional information and all these great tips.
Setting the system path in the following way solved my problem:
c:\Rtoo
seems to be a problem of my complicated setup and not a general problem,
so adding this information may confuse other people.
Best regards
Christian
Gabor Grothendieck wrote:
On Sat, Dec 6, 2008 at 8:08 AM, Duncan Murdoch <[EMAIL PROTECTED]> wrote:
cstrato wrote:
Prof Brian
Prof Brian Ripley wrote:
On Fri, 5 Dec 2008, cstrato wrote:
Dear Duncan
Thank you for this explicit explanation, you are right:
When setting the system variable "Path" (as administrator) in
addition to setting the user variable "PATH" (as user), now
everything works f
://batchfiles.googlecode.com
which automatically sets all environment variables for you including the
PATH making it unnecessary to set your PATH or any environment
variables.
On Fri, Dec 5, 2008 at 4:06 PM, cstrato <[EMAIL PROTECTED]> wrote:
Dear Duncan
Thank you for this explicit explanation, you are
t; on my laptop with
Rtools27 seems not to be necessary.
May I suggest that this could be clarified in "R Installation and
Administration" since there only the user variable "PATH" is mentioned
(as far as I see).
Thank you all one more time.
Best regards
Christian
Dunc
pley wrote:
This is a PATH error: you must have Rtools/bin before Windows system
directories in your path. As the R-admin manual tells you explicitly
fortune("WTFM") applies.
On Fri, 5 Dec 2008, cstrato wrote:
Dear all
When trying to install my package on Windows XP on my Mac,
amme/R/R-2.8.0/doc/html/packages.html' nicht
erzeugen. Grund 'Permission denied'
2: In tools:::win.packages.html(.Library) :
kann HTML Paketindex nicht aktualisieren
installing help
>>> Building/Updating help pages for package 'xps
the example you showed is the second.
>
> The shell you use to can Rcmd INSTALL is not relevant: our software
> ensures that a POSIX shell is used for the make. (This is quite
> different from nmake.)
>
>
Thank you once again and "Happy Eastern"
Best regards
Christia
._._._._._._._._._._._._
Prof Brian Ripley wrote:
>> cl /Ic:\root/include /MT /EHsc /Ox /D "MSVC" /D "WIN32" /c TMLMath.cxx
>
> will AFAIK not work when passed to the shell used (which is ash), and
> in any case will not work for paths with spaces in.
>
nd any solution to this last
problem.
Do you have some other ideas which I could test?
Thank you.
Best regards
Christian
_._._._._._._._._._._._._._._._
C.h.i.s.t.i.a.n S.t.r.a.t.o.w.a
V.i.e.n.n.a A.u.s.t.r.i.a
_._._._._._._._._._._._._._._._
Prof Brian Ripley wrote:
> On Fri, 21 Mar 2
Dear all,
When porting my package to WinXP I have the following problem:
I need to create an environment variable "MYVAR=c:\mypath" which I have
saved in the control panel "System->My Computer" (under the `Advanced' tab).
I have two files which need to access MYVAR: config.win, Makefile.win
Wh
/out:mypkg.dll *.obj Rdll.lib
but it is not clear to me how to convert this example to my makefile?
Thank you in advance
Best regards
Christian
_._._._._._._._._._._._._._._._
C.h.i.s.t.i.a.n S.t.r.a.t.o.w.a
V.i.e.n.n.a A.u.s.t.r.i.a
e.m.a.i.l:cstrato at aon.at
_._._._._._._._._._._._._._
framework, from which you say: "it is hard to
beat a framework that stores (contiguous) data that is optimized for
reading and/or writing".
Best regards
Christian
_._._._._._._._._._._._._._._._
C.h.i.s.t.i.a.n S.t.r.a.t.o.w.a
V.i.e.n.n.a A.u.s.t.r.i.a
e.m.a.i.l: cstrato
; of arguments can be done (in the constructor) before
> calling 'new' (I find this helpful, to avoid have to be too careful
> when constructing initialize methods that deal with both the class and
> classes derived from the class).
>
> Martin
>
> cstrato <[EMAIL PROT
alize gets also called in my package?
> sessionInfo()
R version 2.6.1 (2007-11-26)
i386-apple-darwin8.10.1
locale:
C
attached base packages:
[1] stats graphics grDevices utils datasets methods base
other attached packages:
[1] xps_0.4.0
loaded via a namespace (an
to sQuote() and dQuote(), too, with default being ASCII behavior.
However, this is only my personal opinion.
Best regards
Christian
Marc Schwartz wrote:
> On Sun, 2007-10-14 at 11:56 -0400, Duncan Murdoch wrote:
>
>> On 14/10/2007 10:44 AM, cstrato wrote:
>>
>>
Dear all
When comparing sQuote("text") and dQuote("text") on MacOS X and Linux FC4
I get an inconsistent behavior (using the new release version R-2.6.0):
sQuote: On Mac I get the correct result "'text'", but on FC4 the
incorrect result "`text´".
dQuote: On Mac I get the correct result "\"text\"
v(parent.frame())) {
> -mname <- mlistMetaName(f, where)
> +mname <- mlistMetaName(f, getPackageName(where))
> if(exists(mname, where = where, inherits = missing(where)))
> get(mname, where)
> else
>
> Seth Falcon <[EMAIL PR
Dear Herve
Although I am currently learning to use S4 classes, and thus I am
probably not the person
to comment on S4 classes, I completely agree with you.
Coming from C++ (most of my code is C++), this is what I have
intuitively expected,
although I was not able to formulate it. I am glad that
Dear Herve, dear Martin,
First I want to thank Herve very much for your continuous efforts. You can
not imagine, how relieved I was that you mangaged to reproduce this
behavior.
Just when I wanted to send my reply to Herve, I received Martin's comments:
As you mention, there were two problems in
",
sep="")
.Object <- callNextMethod(.Object, ...)
.Object
}
)
setValidity("SubSubClassB1",
function(object) {
cat("--setValidity:SubSubClassB1--\n")
cat("SubSubClassB1:val:class(object) = ", class(object), "\
Dear Herve
Thank you for your helpful comments, and I especially appreciate that
you tried to run my package. I will try to answer each point separately.
Herve Pages wrote:
Hi Christian,
I can only give you a few reasons why IMO it is very unlikely that anybody
will be able to help you on this
Dear S4 experts,
Since I was reminded that I posted a similar question some time ago,
I am attaching a modified version of my demo package, which allows me
to track what happens during initialization of the following similar
subclasses:
SubSubClassA <- SubClassB <- BaseClass
SubSubClassB <- S
Dear all,
To explain my problem I am attaching a demonstration package "myclasspkg":
I have the following two S4 classes with similar inheritance:
SubSubClassA <- SubClassB <- BaseClass
SubSubClassB <- SubClassB <- BaseClass
In R I am calling the following functions:
> library(myclasspkg)
>
8PM +0200, cstrato wrote:
>
>> Dear all,
>>
>> Assume that I have an S4 class "MyClass" with a slot "myname", which
>> is initialized to: myname="" in method("initialize"):
>>myclass <- new("MyClass", myna
Dear all,
Assume that I have an S4 class "MyClass" with a slot "myname", which
is initialized to: myname="" in method("initialize"):
myclass <- new("MyClass", myname="")
Assume that class "MyClass" has a method "mymethod":
"mymethod.MyClass" <-
function(object, myname=character(0), ...)
I am glad to hear that there seems to be some commitment for improvement,
although I must admit, that I did not realize that both functions do not
check
if a name is a directory or a filename, even though the definition in "The
Open Group Base Specifications" says:
dirname - return the direct
Simon Urbanek wrote:
>
> On Mar 27, 2007, at 2:49 PM, cstrato wrote:
>
>> Hin-Tak Leung wrote:
>>> cstrato wrote:
>>>> 1. I did read the help file.
>>>> 2. I have my own workaround, using e.g.
>>>> file.info("/my/path/")[,&qu
Gabor Grothendieck wrote:
> On 3/27/07, cstrato <[EMAIL PROTECTED]> wrote:
>> Hin-Tak Leung wrote:
>> > cstrato wrote:
>> >> 1. I did read the help file.
>> >> 2. I have my own workaround, using e.g.
>> >> file.info("/my/path/"
Hin-Tak Leung wrote:
> cstrato wrote:
>> 1. I did read the help file.
>> 2. I have my own workaround, using e.g.
>> file.info("/my/path/")[,"isdir"]
>> 3. This was a suggestion.
>> 4. If you agree with me that "/my/path/" is a pa
nals work in the same way:
>
> gannet% dirname /my/path/
> /my
>
> Please DO study the R posting guide and do the homework requesting of
> you before posting.
>
> On Mon, 26 Mar 2007, cstrato wrote:
>
>> Dear all,
>>
>> I have already twice encountered a
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