[Rd] How to deal with functions detected as apparent S3 methods

2015-02-10 Thread Xavier Robin
problem would be appreciated. Best wishes, Xavier -- Xavier Robin, PhD Cellular Signal Integration Group (C-SIG) - Linding Lab Biotech Research and Innovation Center (BRIC) - University of Copenhagen Anker Engelundsvej, DTU Campus, Building 301, DK-2800 Lyngby, DENMARK Mobile:

Re: [Rd] R CMD check: Uses the superseded package: ‘doSNOW’

2015-02-10 Thread Xavier Robin
quivalent foreach adapter for the parallel package. > > Martyn > > On Mon, 2015-02-09 at 23:08 +0100, Xavier Robin wrote: >> Dear list, >> >> When I run an R CMD check --as-cran on my package (pROC) I get the >> following note: >>> Uses the superseded pack

[Rd] R CMD check: Uses the superseded package: ‘doSNOW’

2015-02-09 Thread Xavier Robin
NOW was the only way I could get it to work there. doMC is apparently still available for Unix only. I couldn't get doRNG to work on either platforms. So what is R CMD check noticing me about? Should I ignore the notice, or take an action? If so, which one? Best wishes, Xavier -- Xavier

[Rd] attach 'name' argument ignored with a file?

2011-12-23 Thread Xavier Robin
Dear experRts, I have the feeling that the 'name' argument to the attach function is ignored when 'what' is a file name. Here is an example: save(letters, file="letters.RData") letters.env <- attach("letters.RData", name="letters") search() letters.env The name on the search path is "fil

Re: [Rd] Italics in svg output display as bold (PR#13463)

2009-02-10 Thread Xavier Robin
Yan Wong-3 wrote: > > On 22 Jan 2009, at 11:58, Brian D Ripley wrote: > >> It is a bug on your system: this is done by cairographics, and I >> suspect that the version you have is broken (or possibly your viewer). >> I'll attach the version I get, which does display in italics on my >> syst