- Original Message -
> From: "Dirk Eddelbuettel"
> To: "Jeroen Ooms"
> Cc: "Simon Urbanek" , "r-devel@r-project.org"
> , "Dirk Eddelbuettel"
>
> Sent: Tuesday, February 11, 2025 12:07:19 AM
> Subject: Re: [Rd] binary R packages for GNU/Linux
> On 10 February 2025 at 23:19, Jeroen Ooms
Thank you, Hadley.
It would be great indeed if this can be fixed!
Kind regards,
Tobias
- Original Message -
> From: "hadley wickham"
> To: "Tobias Verbeke"
> Cc: "r-devel@r-project.org"
> Sent: Monday, February 10, 2025 8:32:17 PM
> Subj
Hi Simon,
Thank you for your prompt reply.
- Original Message -
> From: "Simon Urbanek"
> To: "Tobias Verbeke"
> Cc: "r-devel@r-project.org"
> Sent: Monday, February 10, 2025 10:33:40 AM
> Subject: Re: [Rd] binary R packages for GNU/Linu
L.S.
AFAICS the Writing R Extensions and R Installation and Administration manuals
do not explicitly discuss binary R packages on GNU/Linux. Only installation
from source is mentioned
(https://cran.r-project.org/doc/manuals/R-admin.html#Installing-packages-1)
and when discussing repository layo
L.S.
Please find below a tiny patch for a trivial typo.
Kind regards,
Tobias
diff --git a/doc/manual/R-exts.texi b/doc/manual/R-exts.texi
index c9c1015da6..e84bbd53f2 100644
--- a/doc/manual/R-exts.texi
+++ b/doc/manual/R-exts.texi
@@ -6814,7 +6814,7 @@ To negotiate with @I{Uwe Ligges} to host
- Original Message -
> From: "Dirk Eddelbuettel"
> To: "Mario Annau"
> Cc: "r-devel@r-project.org"
> Sent: Sunday, July 19, 2020 10:09:24 PM
> Subject: Re: [Rd] Speed-up/Cache loadNamespace()
> On 19 July 2020 at 20:47, Mario Annau wrote:
>| Am So., 19. Juli 2020 um 20:11 Uhr schrieb Hu
> Creeping code complexity ...
>
> I like to think that the cuteR names will have a Darwinian
> disadvantage in the long run. FWIW Hadley Wickham argues (rightly, I
> think) against mixed-case names:
> http://r-pkgs.had.co.nz/package.html#naming.
Good development environments will offer content
Hi Luck,
If your package is installed,
system.file("extdata", "InputFiles", package = "myPackage")
will give you the full path of the InputFiles directory.
See ?system.file for more details.
HTH,
Tobias
- Original Message -
> From: "Luck Buttered"
> To: "r-devel@r-project.org"
> Se
Thank you,
Tobias
- Original Message -
> From: "hadley wickham"
> To: "Tobias Verbeke"
> Cc: "r-devel@r-project.org"
> Sent: Sunday, August 30, 2015 10:47:16 PM
> Subject: Re: [Rd] [OT] new R logo in vector graphics format
> It exist
/Logo/
Is there anything similar for the new logo?
Many thanks in advance.
Kind regards,
Tobias
--
Tobias Verbeke
Managing Director
Open Analytics NV
Jupiterstraat 20
2600 Antwerp
Belgium
E tobias.verb...@openanalytics.eu
M +32 499 36 33 15
http://www.openanalytics.eu
Many thanks, Duncan.
We will check the prerelease versions of R 3.2.1.
Best regards,
Tobias
- Original Message -
> From: "Duncan Murdoch"
> To: "Tobias Verbeke" ,
> "r-devel@r-project.org"
> Sent: Saturday, June 6, 2015 2:37:04 PM
> Subje
L.S.
I noticed the NEWS file as made available at
http://cran.r-project.org/src/base/NEWS became inconsistent in describing
CHANGES for a new R version:
$ wget http://cran.r-project.org/src/base/NEWS
$ cat NEWS | grep 'CHANGES IN '
CHANGES IN 3.2.0:
CHANGES IN R 3.1.3:
CHANGES IN R 3.1.2:
CHANG
- Original Message -
> From: "Marius Hofert"
> To: "R-devel"
> Sent: Friday, August 22, 2014 10:03:13 PM
> Subject: [Rd] parallel::detectCores(TRUE) gives: Error in system(cmd, TRUE) :
> error in running command
>
> Hi,
>
> Both under the current R-devel (r66456) and a version from abo
Hi Kurt,
The R Service Bus was made to do this.
http://rsb.doc.openanalytics.eu/dev/
http://rsb.doc.openanalytics.eu/dev/wsdocs/index.html
Running in production at multiple big pharma companies since 2010.
Open source and freely available.
Best,
Tobias
- Original Message -
> From: "K
- Original Message -
> From: "Duncan Murdoch"
> To: "Ludovic.Brossard"
> Cc: r-devel@r-project.org
> Sent: Friday, July 18, 2014 9:17:12 PM
> Subject: Re: [Rd] request of information about creating DLL from R to be used
> in other languages/programs
>
> On 18/07/2014, 1:26 PM, Ludovic.B
Dear Prof. Ripley,
Many thanks for the change in R 3.1.1 to be as well as for the description of
the workaround for R 3.1.0.
Best regards,
Tobias Verbeke
- Original Message -
> From: "Prof Brian Ripley"
> To: r-devel@r-project.org
> Sent: Monday, May 12, 2014 12
82e789
Best,
Tobias
- Original Message -----
> From: "Tobias Verbeke"
> To: r-devel@r-project.org
> Sent: Tuesday, May 6, 2014 8:28:54 PM
> Subject: [Rd] R crash using Sys.which on Windows
>
> Dear list,
>
> When installing the latest version of Rtools
L.S.
Please find below a trivial patch which corrects a typo in solve.Rd from base.
Best,
Tobias
Index: solve.Rd
===
--- .architect/workspace/R_svn/src/library/base/man/solve.Rd(revision 65545)
+++ .architect/workspace/R_svn/src
make use of ::: operators inside
a package.
Best,
Tobias
- Original Message -
> From: "Knut Krueger"
> To: r-devel@r-project.org
> Sent: Thursday, May 8, 2014 8:59:43 AM
> Subject: Re: [Rd] checking dependencies in R code ... WARNING
>
> Am 08.05.2014 08:35,
Hi Knut,
The code will contain library or require statements, which
do not belong there, but need to replaced by specifying the
dependencies on these packages in the DESCRIPTION file
(Depends / Imports field). For imports you also need to
make sure the NAMESPACE file contains the intended state
Dear list,
When installing the latest version of Rtools (3.1.0.1942) into a path that
contains more than 96 characters on Windows 7 64-bit,
e.g. into
C:\TheLatestRtoolsInAPathWithMoreThanNinetySixCharactersWillCrashTheRSessionUponCallingTheSysWhichFunctionInRToGetTheGccPath
and assuming that t
Dear Simon,
Many thanks for all additional detail and insight into
your practice using rhome and symlinks. Much appreciated!
Best,
Tobias
- Original Message -
> From: "Simon Urbanek"
> To: "Tobias Verbeke"
> Cc: r-devel@r-project.org
> Sent: Sunda
Hi Dirk,
- Original Message -
> From: "Dirk Eddelbuettel"
> To: "Tobias Verbeke"
> Cc: "Dirk Eddelbuettel" , r-devel@r-project.org
> Sent: Saturday, September 21, 2013 11:03:37 PM
> Subject: Re: [Rd] regenerate Rscript after moving R inst
Hi Dirk,
Many thanks for your reaction.
- Original Message -
> From: "Dirk Eddelbuettel"
> To: "Tobias Verbeke"
> Cc: r-devel@r-project.org
> Sent: Saturday, September 21, 2013 9:00:12 PM
> Subject: Re: [Rd] regenerate Rscript after moving R instal
R packages.
--
Tobias Verbeke
Manager
OpenAnalytics BVBA
Jupiterstraat 20
2600 Antwerp
Belgium
E tobias.verb...@openanalytics.eu
M +32 499 36 33 15
http://www.openanalytics.eu
__
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precedence being character, complex, numeric, integer, logical and
raw.
as.character(1e-2) < 0.05
[1] TRUE
as.character(1e-4) < 0.05
[1] FALSE
Best,
--
Joshua Ulrich | about.me/joshuaulrich
FOSS Trading | www.fosstrading.com
On Wed, Jan 2, 2013 at 12:38 PM, Tobias Verbe
L.S.
Is the following expected and/or documented?
> 1e-2 < "0.05"
[1] TRUE
> 1e-4 < "0.05"
[1] FALSE
Many thanks in advance for any pointer.
Best,
Tobias
> sessionInfo()
R Under development (unstable) (2013-01-01 r61512)
Platform: i386-w64-mingw32/i386 (32-bit)
locale:
[1] LC_COLLATE=English
Hi Chuckles,
On 07/16/2012 09:05 PM, chuckles the clone wrote:
No, it is R version 2.13.1
This is the latest version apt-get is getting.
Is there some advanced technique for obtaining version 2.15.1 ?
Have a look here:
http://cran.r-project.org/bin/linux/ubuntu/
HTH,
Tobias
root:~# cat /et
On 08/05/2011 08:36 PM, Simon Urbanek wrote:
On Jul 19, 2011, at 12:56 PM, Simon Urbanek wrote:
On Jul 19, 2011, at 2:26 AM, Prof Brian Ripley wrote:
On Mon, 18 Jul 2011, Alireza Mahani wrote:
Simon,
Thank you for elaborating on the limitations of R in handling float types. I
think I'm p
On 07/05/2011 04:21 PM, Duncan Murdoch wrote:
On 05/07/2011 10:17 AM, Tobias Verbeke wrote:
Dear Duncan,
On 07/05/2011 03:25 PM, Duncan Murdoch wrote:
> On 05/07/2011 6:52 AM, Tobias Verbeke wrote:
>> L.S.
>>
>> On 07/05/2011 02:16 AM, mark.braving...@csiro.au w
Dear Duncan,
On 07/05/2011 03:25 PM, Duncan Murdoch wrote:
On 05/07/2011 6:52 AM, Tobias Verbeke wrote:
L.S.
On 07/05/2011 02:16 AM, mark.braving...@csiro.au wrote:
> I may have misunderstood, but:
>
> Please could we have an optional installation that does not*not*
byte-compile
L.S.
On 07/05/2011 02:16 AM, mark.braving...@csiro.au wrote:
I may have misunderstood, but:
Please could we have an optional installation that does not*not* byte-compile
base and recommended?
Reason: it's not possible to debug byte-compiled code-- at least not with the
'debug' package, whic
On 06/29/2011 08:08 PM, Duncan Murdoch wrote:
On 29/06/2011 1:44 PM, Duncan Murdoch wrote:
On 29/06/2011 1:09 PM, Uwe Ligges wrote:
>
> On 29.06.2011 13:41, John Maindonald wrote:
> > I get the same style of path as Hadley. This is on Windows 7 Home
Premium with SP1.
> > I start R by clicking on
Hi Michael,
On 03/23/2011 03:03 PM, Michael Friendly wrote:
[Env: R 2.12.2, WinXp]
In a vignette for the vcdExtra package, I had a text file, tv.dat under
data/, that I used in the vignette as
<>=
tv.data<-read.table(system.file("data","tv.dat",package="vcdExtra"))
head(tv.data,5)
@
I was tol
On 03/22/2011 08:41 AM, Martin Maechler wrote:
Tobias Verbeke
on Mon, 21 Mar 2011 23:45:33 +0100 writes:
> L.S. I noticed weird tools::texi2dvi behaviour on R-alpha
> when specifying an absolute path to the .tex file.
> The same phenomenon also appears to o
L.S.
I noticed weird tools::texi2dvi behaviour on R-alpha
when specifying an absolute path to the .tex
file.
The same phenomenon also appears to occur on
R-2.12.2, so maybe the issue is independent
of R.
I hope I did not overlook any important information.
Best,
Tobias
> require(tools)
Loadin
On 01/29/2011 11:59 PM, Prof Brian Ripley wrote:
On Sat, 29 Jan 2011, Martin Maechler wrote:
Tobias Verbeke
on Tue, 25 Jan 2011 21:27:41 +0100 writes:
> L.S.
> Please find below a patch for dendrogram.R (stats package)
> against revision r54107 which allows one to pass the xpd
&g
nd is to use the
plot.dendrogram for this.
Best,
Karl
On Tue, Jan 25, 2011 at 12:17 PM, Tobias Verbeke
mailto:tobias.verb...@openanalytics.eu>> wrote:
Hi Karl,
On 01/25/2011 11:27 AM, Karl Forner wrote:
It seems that the plot function for dendrograms does not draw
Hi Karl,
On 01/25/2011 11:27 AM, Karl Forner wrote:
It seems that the plot function for dendrograms does not draw labels when
they are too long.
hc<- hclust(dist(USArrests), "ave")
dend1<- as.dendrogram(hc)
dend2<- cut(dend1, h=70)
dd<- dend2$lower[[1]]
plot(dd) # first label is drawn
attr(dd
On 06/29/2010 11:56 PM, Hadley Wickham wrote:
Does anyone have any suggestions for debugging the execution of
examples by R CMD check? The examples work fine when I run them from
a live R prompt, but I get errors when they are run by R CMD check.
Not a real tip, but when it occurs I immediate
Paul Gilbert wrote:
...
I try several things: if I do
'svn://christo...@svn.r-forge.r-project.org/svnroot/kml3d', I do
manage to
download the project. But then, I do not manage to upload some
modification.
All looks ok, but I think you are using the wrong protocol. It should
be 'svn+ssh' fo
L.S.
In the current version of ?p.adjust.Rd, one needs
to scroll down to the examples section to find
confirmation of one's guess that "fdr" is an
alias of "BH".
Please find a patch in attachment which mentions
this explicitly.
Best,
Tobias
32c32
< Hochberg (1995) (\code{"BH"}), and Benjamin
Peng Yu wrote:
I'm making a package, Current, I put all R files in the R/ directory
in the package (without using subdirectory). This will become a
problem when there are many files in the directory. I'm wondering how
to use subdirectories in R/?
The standard solution is (I would think) to orga
Hi,
Gabor Grothendieck wrote:
Its not just the time. Its also the nuisance of having to manage files that
I never needed in the first place.
I agree with Gabor that it is more than a 'nice to have'.
There are situations (when integrating R with other
applications) you don't want to touch a
Hi,
What is the place to search for *corporate version of R *including
1) GUI
2) Documentation
3) Cloud Computing or HPC
R is used *as such* in corporate environments all over the world
and
1) it comes with a GUI (on Windows and Mac),
2) comes with extensive documentation and
3) has facili
Friedrich Leisch wrote:
On Tue, 21 Apr 2009 21:16:59 -0500,
Kevin W (KW) wrote:
> The printing of the locale information from sessionInfo is not very tidy.
> Using toLatex(sessionInfo) pretty much guarantees "badness" from breaking
> the margin boundary (though my version of TeX no longer
Philippe Grosjean wrote:
Tobias Verbeke wrote:
Dirk Eddelbuettel wrote:
On 17 April 2009 at 10:36, Duncan Murdoch wrote:
| I think it would have to do more than that to be useful. It would
need | to warn about a lack of an entry for the current version.
Otherwise | package.skeleton would
Dirk Eddelbuettel wrote:
On 17 April 2009 at 10:36, Duncan Murdoch wrote:
| I think it would have to do more than that to be useful. It would need
| to warn about a lack of an entry for the current version. Otherwise
| package.skeleton would create a blank one, and that would satisfy the
| c
Dear list,
Is there a recommended way of building a package
vignette that consists of one "master" file that
\SweaveInput{}'s several other files ?
Many thanks in advance for any pointer.
Best,
Tobias
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Hi Hadley,
I'd be happy to help, especially with my experience writing rdoc with
R and with ruby. I also have a couple of packages in development that
currently don't have any documentation, where I'd be happy to
experiment with new ways of doing documentation (I'm currently
planning on tryin
Hi Marzio,
I am interesting in using R from a web application, for basic statistics and
plots. The server is Java-based (tomcat).
The simplest solution is a system call that generates the text or the image,
then the servlet forwards the output. This can be done from any language,
but it is quite
Dear list,
Tadashi Kadowaki has developed a pdf device package
that allows to add hyperlinks and popups
to (currently) text, mtext and rect calls.
The package passes R CMD check (minor warnings) and compiles
on MacOS X and GNU/Linux, but we do not succeed in building
the package for Windows.
The
There is a trivial typo in ?title.
Please find a patch below.
Kind regards,
Tobias
Index:
/home/tobias/Documents/workspace/Rdevel_svn/src/library/graphics/man/title.Rd
===
---
/home/tobias/Documents/workspace/Rdevel_svn/src/lib
Dear list,
I did not find any mentioning of the fact
that the ** operator can be used as a
synonym for the ^ operator.
> 5 ** 2
[1] 25
Searching of ** in the R Reference Index only leads
to some examples in the mgcv documentation.
Equally ?"**" does not open the arithmetic
operators help page,
Dear Tadashi,
Thank you very much for sharing your work.
I am sending a patch for R-2.7.0 for extending pdf device to embed pop
up text and
web links. The patch is available at
http://www.okada.jp.org/RWiki/?plugin=attach&pcmd=open&file=R-2.7.0.patch&refer=pdf%20device%20patch
You can see what
rotection stack".
Motivation is to determine stack size of a Java vm used
to launch R with a given --max-ppsize option.
Many thanks in advance,
Tobias
--
Tobias Verbeke - Consultant
Business & Decision Benelux
Rue de la révolution 8
1000 Brussels - BELGIUM
+32 499 3
Christophe Genolini wrote:
> Prof Brian Ripley a écrit :
>> Recommended packages cluster codetools foreign lattice nlme and rpart
>> have tests, for example. (As do standard packages grDevices, grid and
>> stats.)
>>
> Thanks for your help.
>
> Concerning .Rin, I check all the package you point,
Peter Dalgaard wrote:
> Christophe Genolini wrote:
>>> hmm, I see 219 out 1378 CRAN packages having a 'tests'
>>> subdirectory, so it seems you have been a bit unlucky. ;-)
>>>
>>>
>> Luck has probably nothing related with my failure.
>> I just try to look in packages recommanded by Pr Bria
>- Oorspronkelijk bericht -
>Van: Peter Dalgaard [mailto:[EMAIL PROTECTED]
>Verzonden: donderdag, april 3, 2008 02:16 PM
>Aan: 'Tobias Verbeke'
>CC: r-devel@r-project.org
>Onderwerp: Re: [Rd] by "infelicity"
>
>Tobias Verbeke wrote:
>> De
Dear list,
Please find below an example of odd
behaviour of the by function.
It occurs both under GNU/Linux R 2.6.2
and Windows R 2.7.0alpha. Respective
sessionInfo()'s are given below.
I hope I do not overlook anything.
testFactor <- factor(sample(LETTERS[1:6], size = 42, replace = TRUE))
tes
I was able to reproduce the problem under Windows (R 2.6.1).
When running ir4 <- isoreg(1:10, y4 <- c(5, 9, 1:2, 5:8, NA, 8)),
the following message appears:
"R for Windows GUI front-end has encountered a problem and
needs to close. We are sorry for the inconvenience"
after which R closes.
HTH,
Dear list,
As can be seen below, adding a NA to the y values
in a call to isoreg results in a segfault.
ir4 <- isoreg(1:10, y4 <- c(5, 9, 1:2, 5:8, NA, 8))
Adding missing values to the x values, on the contrary,
gives an error, but maybe the error message could be
tailored to this particular sit
itself (Rgui to be precise) and
ESS nicely display help pages with some formatting (color code for
Rgui and underlining in an ESS help buffer).
Many thanks in advance,
Tobias
--
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Business & Decision Benelux
Rue de la révolution 8
1000 Brussels - BELGIUM
+32 499 3
example above works
because there is a @emph{next} method, the default method, not that a
new method is selected when the class is changed.)
--
Tobias Verbeke - Consultant
Business & Decision Benelux
Rue de la révolution 8
1000 Brussels - BELGIUM
+32 499 36 33 15
[EMAIL PROTE
C code as a sequence of \R objects. It is included to provide
compatibility with S version 4.
--
Tobias Verbeke - Consultant
Business & Decision Benelux
Rue de la révolution 8
1000 Brussels - BELGIUM
+32 499 36 33 15
[EMAIL PROTECTED]
__
R-d
ost commonly) a file
connection.
jpeg(file = "test.jpg")
plot(1:10)
dev.off()
In other words, is there a way of
capturing the binary `jpeg string'
representing the plot(1:10) graph,
e.g. into a raw vector ?
Many thanks in advance,
Tobias
--
Tobias Verbeke - Consultant
Business
Hi Ben,
> Tobias Verbeke businessdecision.com> writes:
>
>> The resulting package now allows for using an embedded OpenBUGS
>> on GNU/Linux without relying on WINE. Thanks to all for their helpful
>> comments.
>
> woo-hoo! this is great! Any chance
Hin-Tak Leung wrote:
> Tobias Verbeke wrote:
>
>> Actually, I think Hin-Tak is right about the absolute path. Even when
>> the R code will call the executable that resides in that directory, R
>> will call it from any directory and that (current) directory will be
&g
) call, i.e. being able to fill in
`dynamically' the library path to which the package is actually installed.
Is there a way to have the library path to which a package is installed
available during package installation and then to do some
text-processing to fill in this path dynamically into t
or automating analyses on Linux is being able
to compile CBugs.c (see below) when building the R package.
I hope this is useful to someone.
Kind regards,
Tobias
> Tobias Verbeke wrote:
>>> - Oorspronkelijk bericht -
>>> Van: Prof Brian Ripley [mailto:[EMAIL
>- Oorspronkelijk bericht -
>Van: Prof Brian Ripley [mailto:[EMAIL PROTECTED]
>Verzonden: maandag, augustus 6, 2007 03:46 PM
>Aan: 'Tobias Verbeke'
>CC: r-devel@r-project.org
>Onderwerp: Re: [Rd] Makefile for embedding OpenBUGS in R package
>
>On Mon
somefile.out"))
This system call to the CLI is currently the only (non-WINE)
way of using OpenBUGS on Linux in batch mode.
Many thanks in advance,
Tobias
--
Tobias Verbeke - Consultant
Business & Decision Benelux
Rue de la révolution 8
1000 Bruss
Please find below a patch for a trivial
typo in R-lang:
384c384
< Symbol have mode @code{"name"}, storage mode @code{"symbol"}, and type
---
> Symbols have mode @code{"name"}, storage mode @code{"symbol"}, and type
Kind regards,
Tobias
--
T
aries are always include by @samp{.libPaths()}.
---
> site libraries are always included by @samp{.libPaths()}.
Kind regards,
Tobias
--
Tobias Verbeke - Consultant
Business & Decision Benelux
Rue de la révolution 8
1000 Brussels - BELGIUM
+32 499 36 33 15
I'm sure this is completely harmless, but
by accident I discovered that
?nomatterwhat$""
fires up
?"$"
Kind regards,
Tobias
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Martin Maechler
"Tobias" == Tobias Verbeke <[EMAIL PROTECTED]>
on Sat, 09 Dec 2006 22:42:38 +0100 writes:
Tobias> The abline function can be used to draw the
Tobias> regression line when one passes the lm object as an
Tobias> argument.
To
The abline function can be used to draw the
regression line when one passes the lm object
as an argument.
However, if it's an intercept-only model,
it appears to use the intercept
as the slope of the abline:
mod <- lm(dist ~ 1, data = cars)
plot(dist ~ speed, data = cars)
abline(reg = mod) # noth
Dear list,
In ?dimnames, section `Value' I read:
For the '"data.frame"' method both dimnames must be non-null, and
the rownames must be contain no duplicates nor missing values.
^^^
Best regards,
Tobias
> version
platform i486-pc-linux-gnu
arc
Wherever I look up the following reference
the name of the author is spelled Mauchly
contrary to the naming of the R function.
Mauchly, J.W.,
Significance test for sphericity
of a normal $n$-variate distribution,
Annals of mathematical statistics, 11(1940),
p. 204-209.
Is this a typo on the origi
In the `See Also' section of ?lowess, I read
'loess'), a newer formula based version [...]
^^^
Tobias
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