[Rd] Debugging "SETLENGTH() cannot be applied to an ALTVEC object."?

t me about this if you think otherwise) Cheers, Tal Contact Details:----------- Tal Galili, Ph.D. in Statistics tal.gal...@gmail.com www.r-statistics.com (English) www.biostatistics.co.il

Re: [Rd] "cophenetic" function for objects of class "dendrogram"

Hi Alberto, Everyone in this thread are correct. I'll just mention that if your goal was to calculate the cophenetic correlation between dendrograms, the function cor_cophenetic from the dendextend package can help with that (as well as other functions such as cor_bakers_gamma tanglegram and others

Re: [Rd] Request: making cutree S3 in R?

tensions illustrates and > add the following to your package > > > On 6 June 2015 at 04:44, Tal Galili wrote: > >> Hello all, >> >> A question/suggestion: >> >> I was wondering if there is a chance of changing stats::cutree to be S3 >> and >> use c

[Rd] Request: making cutree S3 in R?

Hello all, A question/suggestion: I was wondering if there is a chance of changing stats::cutree to be S3 and use cutree.hclust? For example: cutree <- function(tree, k = NULL, h = NULL,...) { UseMethod("cutree") } cutree.hclust <- stats::cutree # This will obviously need the actual content

Re: [Rd] Probably a "bug" in the dendextend package

) -- On Wed, May 20, 2015 at 11:02 AM, Tal Galili wrote: > Dear Martin, > > You are right. When implementing the dendextend::set function, I failed to > notice that edgePar should accept a list instead of a vector. So all I

Re: [Rd] Probably a "bug" in the dendextend package

Dear Martin, You are right. When implementing the dendextend::set function, I failed to notice that edgePar should accept a list instead of a vector. So all I did was to discover a bug in my own code. I am both sorry for taking your time due to my own mistake, and also grateful for your help (I w

[Rd] A "bug" in plot.dendrogram - can't plot lty with character color

The problem: === Once a dendrogram has a branch with both a line type AND a color (which is a character color), the plot.dendrogram function will not plot and return an error. I say this is a bug because (I believe), we would like a dendrogram to be able to use character colors, while also

Re: [Rd] Wrongly checked MD5 checksums in R 3.2.0's windows binary

) -- On Mon, May 11, 2015 at 4:18 PM, Duncan Murdoch wrote: > On 11/05/2015 8:35 AM, Tal Galili wrote: > >> Thank you Duncan, Peter and Martin for the responses. >> >> Just to mention that the code is based on tools::md5sum, and the issue >>

Re: [Rd] Wrongly checked MD5 checksums in R 3.2.0's windows binary

Thank you Duncan, Peter and Martin for the responses. Just to mention that the code is based on tools::md5sum, and the issue can be reproduced (in Windows) using: if(!require(installr)) install.packages("installr") installr::checkMD5sums2(dir=R.home()) With regards, Tal [[alternative H

[Rd] Wrong MD5 checksums in R 3.2.0

Dear R-devel members, Several R user recently reported (while using the installr package) that when running MD5 checksums on a recent R installation (R 3.2.0), they get that the files ‘bin/R.exe’, ‘b

Re: [Rd] Link to NEWS.2 in NEWS is broken

gt; -pd > > On 20 Jan 2015, at 13:05 , Martin Maechler > wrote: > > >>>>>> Tal Galili > >>>>>>on Tue, 20 Jan 2015 00:30:56 +0200 writes: > > > >> I am not sure where to post this. > > > > Maybe you could try to co

[Rd] Link to NEWS.2 in NEWS is broken

I am not sure where to post this. I am looking at the NEWS file here: http://cran.r-project.org/bin/windows/base/NEWS.R-3.1.2.html And the links at the bottom seem to be broken. This link: http://cran.r-project.org/bin/windows/NEWS.2 Should be this: http://cran.r-project.org/doc/manuals/NEWS.2

[Rd] wrong MD5 checksums in R 3.0.2

Dear R-devel members, An R user recently reportedthat when running MD5 checksums on a recent R installation (R 3.0.2), he gets the following error that the files ‘bin/i386/Rblas.dll’, ‘bin/i386/Rlapack.dll’, ‘bin/x64/R

[Rd] R crashes when using cutree after as.hclust on a subset of a dendrogram

Hello Dear R developers. In using R 3.0.1 on Windows 7 (tried on two computers), I encountered the following behavior: ### ### # get a dendrogram: data(iris) d_iris <- dist(iris[1:4,-5]) hc_iris <- hclust(d_iris) dend_iris <- as.den

Re: [Rd] R 3.0.1: wrong MD5 checksums for Windows?

tics.co.il (Hebrew) | www.r-statistics.com (English) -- On Sat, May 18, 2013 at 12:11 PM, peter dalgaard wrote: > > On May 17, 2013, at 20:01 , Tal Galili wrote: > > > Hello dear R-devel, >

[Rd] R 3.0.1: wrong MD5 checksums for Windows?

Hello dear R-devel, I am not sure if this issue is tracked or not, but in case it isn't: It appears that R 3.0.1 reproduces the error reported for R 3.0.0 here: http://r.789695.n4.nabble.com/R-3-0-0-wrong-MD5-checksums-for-Windows-td4663348.html That is, that when installing R 3.0.1 on Windows 7,

[Rd] R 3.0.0: wrong MD5 checksums for Windows?

Hello dear R-devel, When installing R 3.0.0 on Windows 7, and then running: require(tools) checkMD5sums(dir=R.home()) I get the following massage: files ‘etc/Rconsole’, ‘etc/Rprofile.site’ have the wrong MD5 checksums [1] FALSE This happens when using the 32 and the 64 bit version of R.

[Rd] Is the link to the R wiki down?

I am getting a 404 page for this: http://wiki.r-project.org/ I was not sure who to write this to - so I am writing it here. Best, Tal Contact Details:--- Contact me: tal.gal...@gmail.com | 972-52-7275845 Read me: www.talgalili

[Rd] patching ?merge to allow the user to keep the order of one of the two data.frame objects merged

Hello dear R-devel list members. Following an old (2002) thread from R-help (and having myself needing to solve the same question): https://stat.ethz.ch/pipermail/r-help/2002-October/026249.html I patched the {base} function "merge.data.frame" to have it work with a new parameter called "keep_orde

[Rd] Adding a "description" meta-tag to the R homepage (bump)

:24 PM, Tal Galili wrote: > Hello Peter, > > Here is what google says: > http://www.google.com/support/webmasters/bin/answer.py?answer=35264 > > <http://www.google.com/support/webmasters/bin/answer.py?answer=35264> >> >> We use *a number of different sour

[Rd] lines.loess method - in order to make the plotting of loess consistent with that of lowess

end("topright", legend = c("lines.default", "lines.loess", "lines for lowess"), fill = c(2,3,1)) Best, Tal Galili Contact Details:--- Contact me: tal.gal...@gmail.com | 972-52-7275845

Re: [Rd] Patching "update.packages" to enable updating of only a user defined subset of packages

s.co.il (Hebrew) | www.r-statistics.com (English) -- On Wed, Apr 20, 2011 at 8:34 PM, Sharpie wrote: > > Tal Galili wrote: > > > > Hello dear R developers, > > > > I recently fou

[Rd] Patching "update.packages" to enable updating of only a user defined subset of packages

Hello dear R developers, I recently found out that it is not possible to limit update.packages() to update only a few packages at a time. The patch offered simply adds a 'subset' parameter and the statement bounded within "if(!missing(subset))" to implement it. The code is pasted bellow (and also

Re: [Rd] Adding a "description" meta-tag to the R homepage

-- On Fri, Apr 1, 2011 at 9:38 PM, peter dalgaard wrote: > > On Apr 1, 2011, at 08:49 , Tal Galili wrote: > > > Hello all, > > I hope I'm writing to the correct place. > > > > I believe that the R homepage will benefit from includin

[Rd] Adding a "description" meta-tag to the R homepage

Hello all, I hope I'm writing to the correct place. I believe that the R homepage will benefit from including the "description" meta tag in it's homepage. The reason is that google uses that tag to decide what to show when the R homepage shows up on a search result. The current description of the

[Rd] Consistency of variable storage in R and Sys.setlocale (is this a feature or bug)?

Hello dear R-devel members, I came by an oddity, with regards to how character variables are being transformed when they are in Hebrew, and when Sys.setlocale is changed. Here is an example: # first, let's set the locale to Hebrew Sys.setlocale("LC_ALL", "Hebrew") # Setting locale x <- "של×

[Rd] Bug report: Disappearing text when using a long "expression" in ylab

Hello all, After help form Barry Rowlingson I am reporting my first bug to R-devel. Please be kind if I did something wrong in the reporting - and many thanks for anyone who is reading this e-mail. Example of the bug: tt <- expression(paste("test loo

[Rd] Request - adding recycled "lwd" parameter to polygon

Hello dear members of R-devel mailing list and Kevin Buhr (the author of the polygon function), After some private e-mails, I was informed this is the place to post this feature request. I hope I am correct. I would like to use a command like this: plot(c(1,8), 1:2, type="n") polygon(1:7, c

[Rd] save.image fails when the directory structure has Hebrew in it. (PR#13855)

7.09.RDataTmp Hope to see it resolved. Thanks, Tal --=20 -- My contact information: Tal Galili Phone number: 972-50-3373767 FaceBook: Tal Galili My Blogs: http://www.r-statistics.com/ http://www.talgalili.com http://www.biostatistics.co.il